Gvermi1734.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1734.t1
Unique NameGvermi1734.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length480
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_872contigScGOVlb_872:832..2448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1734Gvermi1734Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_872 832..2448 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1734.t1.CDS1Gvermi1734.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_872 832..1205 +
Gvermi1734.t1.CDS2Gvermi1734.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_872 1385..2448 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1734.t1.exon1Gvermi1734.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_872 832..1205 +
Gvermi1734.t1.exon2Gvermi1734.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_872 1385..2448 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1734.t1.intron1Gvermi1734.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_872 1206..1384 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1734.t1Gvermi1734.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_872 832..2448 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1734.t1 ID=Gvermi1734.t1|Name=Gvermi1734.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=480bp
XDVCKNPSEQKDPTRFWINKRSVVAAAATQPKDVECGLLYLVRAVKEGLE
CYTANFNLGPDGKFLSVGDEASACTIFSILAEAVFPKTRTEARSKDGQAL
RVPELLKHAIDDGHVAVKLVFALAHAELKLVDIFSDFKLSVSHKYLQNAA
TRKQLVQVKNVKTIDPFAFVVWCYDNLDFKKKGRDATMDNWVVTTIAVHS
KERLQKLFFYHDDPSKRPSRVSTTLSEEIAKYSSQNSDATKAIIGVRDID
LKRLSFRLLRHIEMCISMRVPSVTACRERLLSQSFSDLKDCKIPRNLGID
VRPRVRYNKDGKRVTLEPRCYDPEDPDQYDDYEIPDPDEDPLSILTMNNM
YVDLPLHANLADKEVVKAYMEKGKAATFDQLQQIGNLPMDQERPVCEIMG
QPTVADGSPIASRHKSKDEDATSGDKLFQSEQEFPGGFHLLKELITKKNA
LMYELHSYYIAAFRSRKKQKEVFLEPHDPN
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spliced messenger RNA

>Gvermi1734.t1 ID=Gvermi1734.t1|Name=Gvermi1734.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1438bp|location=Sequence derived from alignment at ScGOVlb_872:832..2448+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
GGATGTCTGCAAGAATCCTTCGGAGCAAAAAGATCCTACTCGATTTTGGA
TTAATAAGCGCTCGGTGGTGGCGGCGGCGGCAACTCAGCCAAAAGATGTG
GAGTGTGGCCTTTTGTACTTGGTACGAGCTGTTAAGGAAGGACTTGAATG
CTATACGGCAAATTTTAATCTCGGTCCTGATGGCAAATTCTTGTCTGTAG
GCGACGAGGCTTCAGCTTGTACTATTTTTAGCATTCTCGCTGAAGCAGTG
TTCCCGAAAACAAGAACTGAAGCAAGAAGCAAAGATGGGCAAGCCTTGAG
GGTTCCAGAGCTTTTGAAACATGCGATTGATGATGGACATGTAGCGGTGA
AGCTTGTATTTGCTTTGGCTCACGCCGAACTAAAGTTGGTCGATATCTTC
AGCGATTTCAAGCTGTCTGTGTCTCATAAATATCTCCAGAATGCAGCCAC
AAGAAAGCAATTGGTCCAAGTGAAGAACGTGAAAACCATAGACCCTTTTG
CTTTTGTTGTTTGGTGCTACGACAATCTTGATTTTAAGAAGAAGGGCCGT
GATGCTACCATGGACAATTGGGTCGTTACGACGATTGCTGTTCACTCTAA
AGAGCGTCTGCAGAAGTTGTTCTTTTACCACGACGACCCAAGCAAGCGAC
CGAGTCGAGTCAGCACGACGCTATCCGAGGAAATTGCCAAGTACTCATCG
CAGAACAGTGATGCCACCAAAGCCATCATCGGAGTAAGAGATATTGATCT
GAAGCGACTATCGTTTCGACTGCTCCGTCACATCGAGATGTGTATCTCGA
TGCGAGTTCCCAGCGTCACAGCATGCAGGGAAAGACTCCTCTCGCAATCT
TTTTCAGACTTGAAAGATTGCAAGATACCACGTAACCTTGGAATCGACGT
CCGTCCTCGTGTAAGGTACAACAAGGATGGGAAGAGAGTTACGCTAGAAC
CGCGGTGCTACGATCCAGAGGATCCAGATCAGTATGATGACTACGAGATA
CCCGATCCCGATGAGGACCCATTGTCCATTCTGACCATGAATAACATGTA
TGTGGATCTTCCACTTCATGCCAACCTGGCAGACAAAGAAGTCGTCAAAG
CTTACATGGAAAAGGGCAAGGCTGCCACATTTGACCAGCTGCAGCAGATT
GGAAATCTCCCTATGGACCAAGAACGCCCCGTTTGTGAAATCATGGGACA
ACCCACAGTGGCTGACGGGTCTCCGATTGCAAGCAGGCATAAAAGTAAGG
ATGAAGACGCAACGTCTGGCGACAAACTATTTCAGTCGGAGCAAGAATTC
CCCGGAGGGTTCCACTTGCTGAAAGAGCTCATAACGAAGAAGAACGCTCT
CATGTATGAGCTCCATTCATACTATATTGCCGCGTTTCGGTCGAGAAAAA
AACAAAAGGAGGTATTCCTTGAACCACACGACCCCAAC
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protein sequence of Gvermi1734.t1

>Gvermi1734.t1 ID=Gvermi1734.t1|Name=Gvermi1734.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=480bp
XDVCKNPSEQKDPTRFWINKRSVVAAAATQPKDVECGLLYLVRAVKEGLE
CYTANFNLGPDGKFLSVGDEASACTIFSILAEAVFPKTRTEARSKDGQAL
RVPELLKHAIDDGHVAVKLVFALAHAELKLVDIFSDFKLSVSHKYLQNAA
TRKQLVQVKNVKTIDPFAFVVWCYDNLDFKKKGRDATMDNWVVTTIAVHS
KERLQKLFFYHDDPSKRPSRVSTTLSEEIAKYSSQNSDATKAIIGVRDID
LKRLSFRLLRHIEMCISMRVPSVTACRERLLSQSFSDLKDCKIPRNLGID
VRPRVRYNKDGKRVTLEPRCYDPEDPDQYDDYEIPDPDEDPLSILTMNNM
YVDLPLHANLADKEVVKAYMEKGKAATFDQLQQIGNLPMDQERPVCEIMG
QPTVADGSPIASRHKSKDEDATSGDKLFQSEQEFPGGFHLLKELITKKNA
LMYELHSYYIAAFRSRKKQKEVFLEPHDPN
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mRNA from alignment at ScGOVlb_872:832..2448+

Legend: CDSpolypeptideexonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1734.t1 ID=Gvermi1734.t1|Name=Gvermi1734.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1617bp|location=Sequence derived from alignment at ScGOVlb_872:832..2448+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
GGATGTCTGCAAGAATCCTTCGGAGCAAAAAGATCCTACTCGATTTTGGA
TTAATAAGCGCTCGGTGGTGGCGGCGGCGGCAACTCAGCCAAAAGATGTG
GAGTGTGGCCTTTTGTACTTGGTACGAGCTGTTAAGGAAGGACTTGAATG
CTATACGGCAAATTTTAATCTCGGTCCTGATGGCAAATTCTTGTCTGTAG
GCGACGAGGCTTCAGCTTGTACTATTTTTAGCATTCTCGCTGAAGCAGTG
TTCCCGAAAACAAGAACTGAAGCAAGAAGCAAAGATGGGCAAGCCTTGAG
GGTTCCAGAGCTTTTGAAACATGCGATTGATGATGGACATGTAGCGGTGA
AGCTTGTATTTGCTTTGGCTCACGGTAAGGTTCTTTTAGCAGAGGATCGG
AGTAAGCTCGGACATTGTGAAGGCAGCAAAAAGCGGTCAAACTTCATGGC
GTGCTGGATCGCAAAGGAGATGATTTTACAATGCTCCGGTGCCATGTACA
ACAAACCAACCACCCTTCAGCTGACAGTCGGTGACCTCGTTTTTCCTCTG
GAGCCGAACTAAAGTTGGTCGATATCTTCAGCGATTTCAAGCTGTCTGTG
TCTCATAAATATCTCCAGAATGCAGCCACAAGAAAGCAATTGGTCCAAGT
GAAGAACGTGAAAACCATAGACCCTTTTGCTTTTGTTGTTTGGTGCTACG
ACAATCTTGATTTTAAGAAGAAGGGCCGTGATGCTACCATGGACAATTGG
GTCGTTACGACGATTGCTGTTCACTCTAAAGAGCGTCTGCAGAAGTTGTT
CTTTTACCACGACGACCCAAGCAAGCGACCGAGTCGAGTCAGCACGACGC
TATCCGAGGAAATTGCCAAGTACTCATCGCAGAACAGTGATGCCACCAAA
GCCATCATCGGAGTAAGAGATATTGATCTGAAGCGACTATCGTTTCGACT
GCTCCGTCACATCGAGATGTGTATCTCGATGCGAGTTCCCAGCGTCACAG
CATGCAGGGAAAGACTCCTCTCGCAATCTTTTTCAGACTTGAAAGATTGC
AAGATACCACGTAACCTTGGAATCGACGTCCGTCCTCGTGTAAGGTACAA
CAAGGATGGGAAGAGAGTTACGCTAGAACCGCGGTGCTACGATCCAGAGG
ATCCAGATCAGTATGATGACTACGAGATACCCGATCCCGATGAGGACCCA
TTGTCCATTCTGACCATGAATAACATGTATGTGGATCTTCCACTTCATGC
CAACCTGGCAGACAAAGAAGTCGTCAAAGCTTACATGGAAAAGGGCAAGG
CTGCCACATTTGACCAGCTGCAGCAGATTGGAAATCTCCCTATGGACCAA
GAACGCCCCGTTTGTGAAATCATGGGACAACCCACAGTGGCTGACGGGTC
TCCGATTGCAAGCAGGCATAAAAGTAAGGATGAAGACGCAACGTCTGGCG
ACAAACTATTTCAGTCGGAGCAAGAATTCCCCGGAGGGTTCCACTTGCTG
AAAGAGCTCATAACGAAGAAGAACGCTCTCATGTATGAGCTCCATTCATA
CTATATTGCCGCGTTTCGGTCGAGAAAAAAACAAAAGGAGGTATTCCTTG
AACCACACGACCCCAAC
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Coding sequence (CDS) from alignment at ScGOVlb_872:832..2448+

>Gvermi1734.t1 ID=Gvermi1734.t1|Name=Gvermi1734.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1438bp|location=Sequence derived from alignment at ScGOVlb_872:832..2448+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
GGATGTCTGCAAGAATCCTTCGGAGCAAAAAGATCCTACTCGATTTTGGA
TTAATAAGCGCTCGGTGGTGGCGGCGGCGGCAACTCAGCCAAAAGATGTG
GAGTGTGGCCTTTTGTACTTGGTACGAGCTGTTAAGGAAGGACTTGAATG
CTATACGGCAAATTTTAATCTCGGTCCTGATGGCAAATTCTTGTCTGTAG
GCGACGAGGCTTCAGCTTGTACTATTTTTAGCATTCTCGCTGAAGCAGTG
TTCCCGAAAACAAGAACTGAAGCAAGAAGCAAAGATGGGCAAGCCTTGAG
GGTTCCAGAGCTTTTGAAACATGCGATTGATGATGGACATGTAGCGGTGA
AGCTTGTATTTGCTTTGGCTCACGCCGAACTAAAGTTGGTCGATATCTTC
AGCGATTTCAAGCTGTCTGTGTCTCATAAATATCTCCAGAATGCAGCCAC
AAGAAAGCAATTGGTCCAAGTGAAGAACGTGAAAACCATAGACCCTTTTG
CTTTTGTTGTTTGGTGCTACGACAATCTTGATTTTAAGAAGAAGGGCCGT
GATGCTACCATGGACAATTGGGTCGTTACGACGATTGCTGTTCACTCTAA
AGAGCGTCTGCAGAAGTTGTTCTTTTACCACGACGACCCAAGCAAGCGAC
CGAGTCGAGTCAGCACGACGCTATCCGAGGAAATTGCCAAGTACTCATCG
CAGAACAGTGATGCCACCAAAGCCATCATCGGAGTAAGAGATATTGATCT
GAAGCGACTATCGTTTCGACTGCTCCGTCACATCGAGATGTGTATCTCGA
TGCGAGTTCCCAGCGTCACAGCATGCAGGGAAAGACTCCTCTCGCAATCT
TTTTCAGACTTGAAAGATTGCAAGATACCACGTAACCTTGGAATCGACGT
CCGTCCTCGTGTAAGGTACAACAAGGATGGGAAGAGAGTTACGCTAGAAC
CGCGGTGCTACGATCCAGAGGATCCAGATCAGTATGATGACTACGAGATA
CCCGATCCCGATGAGGACCCATTGTCCATTCTGACCATGAATAACATGTA
TGTGGATCTTCCACTTCATGCCAACCTGGCAGACAAAGAAGTCGTCAAAG
CTTACATGGAAAAGGGCAAGGCTGCCACATTTGACCAGCTGCAGCAGATT
GGAAATCTCCCTATGGACCAAGAACGCCCCGTTTGTGAAATCATGGGACA
ACCCACAGTGGCTGACGGGTCTCCGATTGCAAGCAGGCATAAAAGTAAGG
ATGAAGACGCAACGTCTGGCGACAAACTATTTCAGTCGGAGCAAGAATTC
CCCGGAGGGTTCCACTTGCTGAAAGAGCTCATAACGAAGAAGAACGCTCT
CATGTATGAGCTCCATTCATACTATATTGCCGCGTTTCGGTCGAGAAAAA
AACAAAAGGAGGTATTCCTTGAACCACACGACCCCAAC
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