Gvermi166.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi166.t1
Unique NameGvermi166.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length212
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3522contigScGOVlb_3522:417..1174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi166Gvermi166Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3522 417..1174 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi166.t1Gvermi166.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3522 417..1174 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi166.t1.stop1Gvermi166.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3522 417..419 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi166.t1.CDS1Gvermi166.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3522 417..610 -
Gvermi166.t1.CDS2Gvermi166.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3522 679..1026 -
Gvermi166.t1.CDS3Gvermi166.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3522 1081..1174 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi166.t1.exon1Gvermi166.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3522 417..610 -
Gvermi166.t1.exon2Gvermi166.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3522 679..1026 -
Gvermi166.t1.exon3Gvermi166.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3522 1081..1174 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi166.t1.intron1Gvermi166.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3522 611..678 -
Gvermi166.t1.intron2Gvermi166.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3522 1027..1080 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi166.t1.start1Gvermi166.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3522 1172..1174 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi166.t1 ID=Gvermi166.t1|Name=Gvermi166.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=212bp
MRPTTAQGRSFINPLVIQDNQDDSDTSLLPVDVVDLVGDNDDSNYRQNGG
DMSPDVMDLSSDNGDHDFHYDADNFQQRKRVYTIQEKKLVLQAVCKVGTR
WNLIHGSFRGLEHIQAHLVKGIFKTLKDSFRRDRGRKLRRMGLLDLYVAA
QKVAERHVPRARAPLTTSPPPIRAVYYGMCIACGAPIRKGMFIVNNGAWV
HVSCQRKHSIV*
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spliced messenger RNA

>Gvermi166.t1 ID=Gvermi166.t1|Name=Gvermi166.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=636bp|location=Sequence derived from alignment at ScGOVlb_3522:417..1174- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCCAACGACTGCACAAGGTCGCAGCTTCATCAACCCTCTTGTCAT
TCAAGATAACCAAGATGACAGTGACACTTCATTACTACCGGTAGATGTAG
TTGATCTTGTTGGTGACAATGATGACAGCAACTACCGCCAAAACGGAGGC
GATATGTCGCCAGACGTCATGGATTTGTCCAGTGATAATGGGGACCACGA
TTTTCATTACGACGCAGATAATTTTCAACAAAGGAAGAGAGTCTATACCA
TTCAAGAAAAGAAACTTGTCCTCCAGGCCGTGTGCAAGGTTGGGACCCGT
TGGAATCTCATCCACGGTTCGTTTCGCGGCTTGGAACACATACAGGCCCA
TCTTGTCAAAGGTATTTTCAAAACCTTGAAAGACTCATTTCGTAGAGATC
GCGGAAGGAAGCTTCGACGAATGGGACTATTGGATCTTTATGTTGCTGCC
CAAAAAGTTGCAGAAAGGCACGTTCCTCGAGCTCGAGCTCCCCTGACGAC
GAGTCCTCCACCCATTCGGGCTGTGTATTACGGGATGTGCATAGCATGCG
GTGCTCCAATTCGAAAGGGAATGTTTATTGTCAACAACGGCGCGTGGGTT
CACGTTTCATGCCAACGAAAACACAGCATAGTTTAA
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protein sequence of Gvermi166.t1

>Gvermi166.t1 ID=Gvermi166.t1|Name=Gvermi166.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=212bp
MRPTTAQGRSFINPLVIQDNQDDSDTSLLPVDVVDLVGDNDDSNYRQNGG
DMSPDVMDLSSDNGDHDFHYDADNFQQRKRVYTIQEKKLVLQAVCKVGTR
WNLIHGSFRGLEHIQAHLVKGIFKTLKDSFRRDRGRKLRRMGLLDLYVAA
QKVAERHVPRARAPLTTSPPPIRAVYYGMCIACGAPIRKGMFIVNNGAWV
HVSCQRKHSIV*
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mRNA from alignment at ScGOVlb_3522:417..1174-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi166.t1 ID=Gvermi166.t1|Name=Gvermi166.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=758bp|location=Sequence derived from alignment at ScGOVlb_3522:417..1174- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTCCAACGACTGCACAAGGTCGCAGCTTCATCAACCCTCTTGTCAT
TCAAGATAACCAAGATGACAGTGACACTTCATTACTACCGGTAGGCAAGT
ATTTGTTGACCTGACTTTGCCCCACTAACGCAATTGTTACCTCTATAGAT
GTAGTTGATCTTGTTGGTGACAATGATGACAGCAACTACCGCCAAAACGG
AGGCGATATGTCGCCAGACGTCATGGATTTGTCCAGTGATAATGGGGACC
ACGATTTTCATTACGACGCAGATAATTTTCAACAAAGGAAGAGAGTCTAT
ACCATTCAAGAAAAGAAACTTGTCCTCCAGGCCGTGTGCAAGGTTGGGAC
CCGTTGGAATCTCATCCACGGTTCGTTTCGCGGCTTGGAACACATACAGG
CCCATCTTGTCAAAGGTATTTTCAAAACCTTGAAAGACTCATTTCGTAGA
GATCGCGGAAGGAAGCTTCGACGAATGGGACTATTGGATCTTTATGGTAA
GTGCGCAACTCATTGCGAACTTTGATAGAAATTGTCCTAACAATATGGGA
ATTTGTTTTCATAGTTGCTGCCCAAAAAGTTGCAGAAAGGCACGTTCCTC
GAGCTCGAGCTCCCCTGACGACGAGTCCTCCACCCATTCGGGCTGTGTAT
TACGGGATGTGCATAGCATGCGGTGCTCCAATTCGAAAGGGAATGTTTAT
TGTCAACAACGGCGCGTGGGTTCACGTTTCATGCCAACGAAAACACAGCA
TAGTTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3522:417..1174-

>Gvermi166.t1 ID=Gvermi166.t1|Name=Gvermi166.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=636bp|location=Sequence derived from alignment at ScGOVlb_3522:417..1174- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTCCAACGACTGCACAAGGTCGCAGCTTCATCAACCCTCTTGTCAT
TCAAGATAACCAAGATGACAGTGACACTTCATTACTACCGGTAGATGTAG
TTGATCTTGTTGGTGACAATGATGACAGCAACTACCGCCAAAACGGAGGC
GATATGTCGCCAGACGTCATGGATTTGTCCAGTGATAATGGGGACCACGA
TTTTCATTACGACGCAGATAATTTTCAACAAAGGAAGAGAGTCTATACCA
TTCAAGAAAAGAAACTTGTCCTCCAGGCCGTGTGCAAGGTTGGGACCCGT
TGGAATCTCATCCACGGTTCGTTTCGCGGCTTGGAACACATACAGGCCCA
TCTTGTCAAAGGTATTTTCAAAACCTTGAAAGACTCATTTCGTAGAGATC
GCGGAAGGAAGCTTCGACGAATGGGACTATTGGATCTTTATGTTGCTGCC
CAAAAAGTTGCAGAAAGGCACGTTCCTCGAGCTCGAGCTCCCCTGACGAC
GAGTCCTCCACCCATTCGGGCTGTGTATTACGGGATGTGCATAGCATGCG
GTGCTCCAATTCGAAAGGGAATGTTTATTGTCAACAACGGCGCGTGGGTT
CACGTTTCATGCCAACGAAAACACAGCATAGTTTAA
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