Gvermi1507.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1507.t1
Unique NameGvermi1507.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length337
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3837contigScGOVlb_3837:130..1140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1507Gvermi1507Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3837 130..1140 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1507.t1.stop1Gvermi1507.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3837 130..132 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1507.t1.CDS1Gvermi1507.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3837 130..1140 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1507.t1.exon1Gvermi1507.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3837 130..1140 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1507.t1.start1Gvermi1507.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3837 1138..1140 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1507.t1Gvermi1507.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3837 130..1140 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1507.t1 ID=Gvermi1507.t1|Name=Gvermi1507.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=337bp
MENNTNPNSETILDRDFSFQLPRTEITGTDSNDAISSPGITSPENLQAGL
EPEVEVFALDGNDTVQGGDNQDFVFAGDGDDTVYGAGGDDEIAGGDGNDL
LFGGTENDLLAGDNVSFSSGNDTIYGNDGNDVISGNLGSDYLDGGDGNDT
LLGDVSQTRIRGRGRISSGDVDTLIGGNGDDVLAGAPGENSILGGGDGND
QFVIPESGFTTIKDLGVLVDPNTNPNGVVSSQLPNEVLFVTDDEIGGGDF
GNSFEVDFIQEGNNVRVVNDSGKSIAILENISKDRITQTNDSSPPSPIIT
FDEVSGIFTTEESAPTTVLTFNIEQEAPLVEDTEFL*
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spliced messenger RNA

>Gvermi1507.t1 ID=Gvermi1507.t1|Name=Gvermi1507.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1011bp|location=Sequence derived from alignment at ScGOVlb_3837:130..1140- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAACAACACTAACCCAAATTCCGAAACAATTTTAGATCGAGACTT
CTCTTTCCAACTGCCTAGAACCGAAATAACAGGAACAGATAGCAATGATG
CTATTTCATCACCTGGCATAACAAGCCCAGAAAATTTGCAAGCTGGACTT
GAACCAGAAGTAGAGGTTTTCGCGCTTGATGGCAATGATACTGTTCAAGG
GGGAGATAATCAAGATTTTGTCTTCGCTGGTGATGGAGATGACACAGTAT
ATGGCGCTGGTGGAGATGATGAAATTGCTGGCGGAGATGGTAATGATTTA
CTATTTGGTGGAACTGAGAACGATCTACTAGCCGGCGACAACGTTTCATT
TTCAAGTGGGAACGACACAATCTATGGGAATGATGGGAATGATGTAATCA
GTGGTAATTTAGGGAGTGATTACCTTGATGGTGGTGATGGAAATGACACT
TTGCTAGGAGATGTAAGTCAGACACGAATTAGAGGTCGAGGTCGAATCAG
TAGTGGCGATGTAGACACTCTTATCGGTGGTAATGGTGATGATGTTTTGG
CTGGTGCTCCTGGCGAAAATTCTATCTTAGGTGGTGGTGATGGTAATGAT
CAATTCGTCATACCAGAATCTGGGTTCACCACCATCAAAGACCTCGGCGT
TCTTGTAGATCCGAATACGAATCCGAACGGAGTAGTTAGTTCACAGCTAC
CCAATGAGGTATTATTCGTTACCGATGATGAAATAGGTGGAGGAGATTTT
GGTAACTCCTTTGAAGTTGACTTTATTCAGGAGGGAAATAATGTGCGGGT
AGTTAATGACAGTGGTAAATCCATAGCTATATTAGAAAATATCAGTAAAG
ACAGGATTACACAGACCAATGACTCGTCGCCTCCATCTCCTATCATAACT
TTTGATGAGGTAAGTGGTATTTTTACTACGGAAGAATCGGCACCAACAAC
CGTCTTAACGTTTAACATAGAGCAGGAAGCCCCTTTAGTTGAAGATACAG
AATTTCTTTAA
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protein sequence of Gvermi1507.t1

>Gvermi1507.t1 ID=Gvermi1507.t1|Name=Gvermi1507.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=337bp
MENNTNPNSETILDRDFSFQLPRTEITGTDSNDAISSPGITSPENLQAGL
EPEVEVFALDGNDTVQGGDNQDFVFAGDGDDTVYGAGGDDEIAGGDGNDL
LFGGTENDLLAGDNVSFSSGNDTIYGNDGNDVISGNLGSDYLDGGDGNDT
LLGDVSQTRIRGRGRISSGDVDTLIGGNGDDVLAGAPGENSILGGGDGND
QFVIPESGFTTIKDLGVLVDPNTNPNGVVSSQLPNEVLFVTDDEIGGGDF
GNSFEVDFIQEGNNVRVVNDSGKSIAILENISKDRITQTNDSSPPSPIIT
FDEVSGIFTTEESAPTTVLTFNIEQEAPLVEDTEFL*
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mRNA from alignment at ScGOVlb_3837:130..1140-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1507.t1 ID=Gvermi1507.t1|Name=Gvermi1507.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1011bp|location=Sequence derived from alignment at ScGOVlb_3837:130..1140- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAAACAACACTAACCCAAATTCCGAAACAATTTTAGATCGAGACTT
CTCTTTCCAACTGCCTAGAACCGAAATAACAGGAACAGATAGCAATGATG
CTATTTCATCACCTGGCATAACAAGCCCAGAAAATTTGCAAGCTGGACTT
GAACCAGAAGTAGAGGTTTTCGCGCTTGATGGCAATGATACTGTTCAAGG
GGGAGATAATCAAGATTTTGTCTTCGCTGGTGATGGAGATGACACAGTAT
ATGGCGCTGGTGGAGATGATGAAATTGCTGGCGGAGATGGTAATGATTTA
CTATTTGGTGGAACTGAGAACGATCTACTAGCCGGCGACAACGTTTCATT
TTCAAGTGGGAACGACACAATCTATGGGAATGATGGGAATGATGTAATCA
GTGGTAATTTAGGGAGTGATTACCTTGATGGTGGTGATGGAAATGACACT
TTGCTAGGAGATGTAAGTCAGACACGAATTAGAGGTCGAGGTCGAATCAG
TAGTGGCGATGTAGACACTCTTATCGGTGGTAATGGTGATGATGTTTTGG
CTGGTGCTCCTGGCGAAAATTCTATCTTAGGTGGTGGTGATGGTAATGAT
CAATTCGTCATACCAGAATCTGGGTTCACCACCATCAAAGACCTCGGCGT
TCTTGTAGATCCGAATACGAATCCGAACGGAGTAGTTAGTTCACAGCTAC
CCAATGAGGTATTATTCGTTACCGATGATGAAATAGGTGGAGGAGATTTT
GGTAACTCCTTTGAAGTTGACTTTATTCAGGAGGGAAATAATGTGCGGGT
AGTTAATGACAGTGGTAAATCCATAGCTATATTAGAAAATATCAGTAAAG
ACAGGATTACACAGACCAATGACTCGTCGCCTCCATCTCCTATCATAACT
TTTGATGAGGTAAGTGGTATTTTTACTACGGAAGAATCGGCACCAACAAC
CGTCTTAACGTTTAACATAGAGCAGGAAGCCCCTTTAGTTGAAGATACAG
AATTTCTTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3837:130..1140-

>Gvermi1507.t1 ID=Gvermi1507.t1|Name=Gvermi1507.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1011bp|location=Sequence derived from alignment at ScGOVlb_3837:130..1140- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAAACAACACTAACCCAAATTCCGAAACAATTTTAGATCGAGACTT
CTCTTTCCAACTGCCTAGAACCGAAATAACAGGAACAGATAGCAATGATG
CTATTTCATCACCTGGCATAACAAGCCCAGAAAATTTGCAAGCTGGACTT
GAACCAGAAGTAGAGGTTTTCGCGCTTGATGGCAATGATACTGTTCAAGG
GGGAGATAATCAAGATTTTGTCTTCGCTGGTGATGGAGATGACACAGTAT
ATGGCGCTGGTGGAGATGATGAAATTGCTGGCGGAGATGGTAATGATTTA
CTATTTGGTGGAACTGAGAACGATCTACTAGCCGGCGACAACGTTTCATT
TTCAAGTGGGAACGACACAATCTATGGGAATGATGGGAATGATGTAATCA
GTGGTAATTTAGGGAGTGATTACCTTGATGGTGGTGATGGAAATGACACT
TTGCTAGGAGATGTAAGTCAGACACGAATTAGAGGTCGAGGTCGAATCAG
TAGTGGCGATGTAGACACTCTTATCGGTGGTAATGGTGATGATGTTTTGG
CTGGTGCTCCTGGCGAAAATTCTATCTTAGGTGGTGGTGATGGTAATGAT
CAATTCGTCATACCAGAATCTGGGTTCACCACCATCAAAGACCTCGGCGT
TCTTGTAGATCCGAATACGAATCCGAACGGAGTAGTTAGTTCACAGCTAC
CCAATGAGGTATTATTCGTTACCGATGATGAAATAGGTGGAGGAGATTTT
GGTAACTCCTTTGAAGTTGACTTTATTCAGGAGGGAAATAATGTGCGGGT
AGTTAATGACAGTGGTAAATCCATAGCTATATTAGAAAATATCAGTAAAG
ACAGGATTACACAGACCAATGACTCGTCGCCTCCATCTCCTATCATAACT
TTTGATGAGGTAAGTGGTATTTTTACTACGGAAGAATCGGCACCAACAAC
CGTCTTAACGTTTAACATAGAGCAGGAAGCCCCTTTAGTTGAAGATACAG
AATTTCTTTAA
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