Gvermi14406.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi14406.t1
Unique NameGvermi14406.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length712
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_870contigScGOVlb_870:220..2431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi14406Gvermi14406Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_870 220..2431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi14406.t1Gvermi14406.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_870 220..2431 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi14406.t1.start1Gvermi14406.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_870 220..222 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi14406.t1.CDS1Gvermi14406.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_870 220..2330 +
Gvermi14406.t1.CDS2Gvermi14406.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_870 2407..2431 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi14406.t1.exon1Gvermi14406.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_870 220..2330 +
Gvermi14406.t1.exon2Gvermi14406.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_870 2407..2431 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi14406.t1.intron1Gvermi14406.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_870 2331..2406 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi14406.t1.stop1Gvermi14406.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_870 2429..2431 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi14406.t1 ID=Gvermi14406.t1|Name=Gvermi14406.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=712bp
MASHSNSNHSRKSGNKSTASSASGKAQSGSGYNWFVEGTLDAFGVGTASV
AKAAAAPAVVSPEKPLLPSKTNSNNKTNNQHHRITALGGGGAGGAAARSR
SSSAPRAAQSRRTFGGTITSAGTSVQSGSLATTTVGGTTANTTTVGGGGT
YYDDDGCDDSTWQTLDYDELSLDLSLAGHHNSGSCGGTGPTLAAGCHMAQ
GLVEQTGCGQLESFLCGAATTNSKSKSSSYAAQSKLEQQQGQRIRDLKFT
NAKLLARTAELQEENAAAQLKVQKILRVSDVGALQKRCQGAELHNQQLQA
QIMELKAVAEMSKLDRHATNMTNTTTPAANNAQAASSVATSTACVAPTSL
TTPADSTNTARGGVATGSSTTCNCNVAGLQKELRHVQEVSSTQRDENVRL
PEQVDQLTESLQSLQAKITHNSKDAELEAALSETKKLRDEHDAVVKKHEA
ALKSAAESSLETELELKRQIEELRCITAATVTATEQQPPPAAADAANINL
LSQRDDTICDLRQRCMEYSKQLTALQEQASANKQLNDSGVQKQQEQQRQQ
QEQLVEKLQAELEKLHLELEELQKELECSDEKLGFEQQNVEVLQVNLDES
QNTVDALRLELEKSKQKYNKQLTTLYNAAKANDEKLELEQQTVVELRQGL
NESKEANDALRQELECTKSTGATELQKSVAKLELEQQTVEDVQHELDEAQ
CAVDVGERQRF*
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spliced messenger RNA

>Gvermi14406.t1 ID=Gvermi14406.t1|Name=Gvermi14406.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2136bp|location=Sequence derived from alignment at ScGOVlb_870:220..2431+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCCCACAGCAATAGCAACCACAGCAGAAAGAGCGGCAACAAAAG
CACTGCTTCTTCTGCTTCTGGCAAGGCGCAGAGTGGTAGTGGCTACAATT
GGTTCGTCGAAGGTACCCTCGATGCCTTTGGCGTAGGAACAGCGTCGGTT
GCCAAAGCTGCTGCTGCGCCGGCCGTGGTATCTCCCGAAAAGCCCCTCCT
GCCGTCCAAGACCAACAGCAACAACAAGACCAATAATCAGCATCACCGAA
TCACCGCACTGggaggtggtggtgctggtggtgctgCCGCTCGATCGCGC
TCCTCCAGCGCCCCGCGAGCCGCGCAGTCTCGAAGAACCTTTGGCGGCAC
AATAACCTCGGCGGGCACCAGCGTTCAATCTGGATCCCTCGCTACCACGA
CCGTTGGTGGAACGACAGCCAACACGACAACGGTGGGCGGCGGCGGCACC
TATTACGACGATGATGGCTGCGATGATTCCACCTGGCAAACGCTCGACTA
CGACGAGCTGTCGCTCGATCTCAGTCTCGCGGGGCATCACAACAGTGGTA
GCTGTGGTGGTACTGGTCCGACGCTAGCCGCTGGATGTCACATGGCCCAG
GGCCTGGTGGAACAAACGGGGTGCGGTCAACTGGAGAGCTTCTTGTGCGG
CGCCGCCACGACCAATTCAAAGTCAAAGTCGTCGTCGTACGCGGCCCAAT
CCAAGCTCGAACAGCAGCAGGGCCAGCGCATTCGCGACCTAAAGTTCACC
AATGCCAAATTGCTGGCGCGCACGGCCGAGCTGCAGGAGGAAAATGCGGC
CGCGCAGCTCAAGGTCCAAAAGATTTTGCGCGTGTCGGACGTGGGGGCGC
TGCAAAAGCGCTGCCAGGGCGCCGAGCTCCACAACCAGCAGCTGCAGGCG
CAAATTATGGAGCTCAAGGCCGTGGCGGAAATGAGCAAGCTCGATCGCCA
CGCCACCAATATGACAAATACAACAACACCAGCGGCAAACAATGCCCAAG
CAGCGAGTAGTGTGGCCACGTCCACGGCATGTGTGGCTCCAACCTCGTTA
ACGACACCAGCGGATTCAACAAATACGGCTCGGGGCGGCGTTGCGACTGG
CAGCAGCACGACCTGCAACTGCAACGTGGCTGGCTTGCAAAAGGAACTGC
GGCACGTACAGGAGGTGTCTAGCACGCAACGGGACGAAAATGTGCGGCTA
CCGGAGCAGGTGGACCAGCTCACGGAAAGCCTCCAGTCGCTGCAAGCGAA
AATTACCCACAACAGCAAGGATGCCGAGCTGGAAGCGGCGCTGTCCGAAA
CGAAGAAACTCCGGGACGAGCACGACGCTGTCGTCAAAAAGCACGAGGCA
GCGCTCAAGAGTGCGGCCGAGTCGAGCTTGGAAACGGAACTTGAGCTCAA
GCGCCAGATCGAAGAGCTGCGGTGTATCACCGCCGCTACTGTAACTGCTA
CGGAACAGCAGCCACCTCCAGCAGCAGCGGATGCCGCCAATATCAATTTG
CTCAGTCAGCGGGACGATACCATTTGCGATTTGCGGCAGCGGTGCATGGA
GTACAGCAAGCAATTGACGGCGCTGCAGGAACAAGCGAGTGCAAACAAGC
AGTTAAATGACAGTGGCGTTcagaaacagcaggagcagcagcggcagcag
caggagcaATTGGTCGAGAAATTGCAAGCAGAGCTCGAGAAACTGCACCT
GGAGCTCGAGGAACTGCAAAAGGAGCTGGAATGCTCGGACGAAAAGCTGG
GCTTTGAGCAGCAAAATGTCGAAGTCTTGCAAGTGAACCTGGACGAGTCG
CAAAATACGGTCGACGCGTTGAGACTGGAGCTCGAAAAATCCAAGCAGAA
GTACAACAAGCAATTGACGACGCTTTATAATGCGGCCAAAGCGAACGACG
AAAAGCTGGAGCTCGAGCAGCAAACAGTGGTGGAACTTCGGCAAGGACTG
AACGAGTCCAAGGAAGCGAACGACGCCTTGAGGCAAGAGCTAGAGTGCAC
AAAGTCCACGGGTGCAACTGAATTGCAAAAGTCGGTTGCCAAGTTGGAAC
TAGAGCAGCAGACGGTTGAAGATGTGCAGCATGAGTTGGACGAAGCGCAA
TGCGCTGTCGAtgttggagagcggcagcgattttag
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protein sequence of Gvermi14406.t1

>Gvermi14406.t1 ID=Gvermi14406.t1|Name=Gvermi14406.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=712bp
MASHSNSNHSRKSGNKSTASSASGKAQSGSGYNWFVEGTLDAFGVGTASV
AKAAAAPAVVSPEKPLLPSKTNSNNKTNNQHHRITALGGGGAGGAAARSR
SSSAPRAAQSRRTFGGTITSAGTSVQSGSLATTTVGGTTANTTTVGGGGT
YYDDDGCDDSTWQTLDYDELSLDLSLAGHHNSGSCGGTGPTLAAGCHMAQ
GLVEQTGCGQLESFLCGAATTNSKSKSSSYAAQSKLEQQQGQRIRDLKFT
NAKLLARTAELQEENAAAQLKVQKILRVSDVGALQKRCQGAELHNQQLQA
QIMELKAVAEMSKLDRHATNMTNTTTPAANNAQAASSVATSTACVAPTSL
TTPADSTNTARGGVATGSSTTCNCNVAGLQKELRHVQEVSSTQRDENVRL
PEQVDQLTESLQSLQAKITHNSKDAELEAALSETKKLRDEHDAVVKKHEA
ALKSAAESSLETELELKRQIEELRCITAATVTATEQQPPPAAADAANINL
LSQRDDTICDLRQRCMEYSKQLTALQEQASANKQLNDSGVQKQQEQQRQQ
QEQLVEKLQAELEKLHLELEELQKELECSDEKLGFEQQNVEVLQVNLDES
QNTVDALRLELEKSKQKYNKQLTTLYNAAKANDEKLELEQQTVVELRQGL
NESKEANDALRQELECTKSTGATELQKSVAKLELEQQTVEDVQHELDEAQ
CAVDVGERQRF*
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mRNA from alignment at ScGOVlb_870:220..2431+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi14406.t1 ID=Gvermi14406.t1|Name=Gvermi14406.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2212bp|location=Sequence derived from alignment at ScGOVlb_870:220..2431+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTCCCACAGCAATAGCAACCACAGCAGAAAGAGCGGCAACAAAAG
CACTGCTTCTTCTGCTTCTGGCAAGGCGCAGAGTGGTAGTGGCTACAATT
GGTTCGTCGAAGGTACCCTCGATGCCTTTGGCGTAGGAACAGCGTCGGTT
GCCAAAGCTGCTGCTGCGCCGGCCGTGGTATCTCCCGAAAAGCCCCTCCT
GCCGTCCAAGACCAACAGCAACAACAAGACCAATAATCAGCATCACCGAA
TCACCGCACTGggaggtggtggtgctggtggtgctgCCGCTCGATCGCGC
TCCTCCAGCGCCCCGCGAGCCGCGCAGTCTCGAAGAACCTTTGGCGGCAC
AATAACCTCGGCGGGCACCAGCGTTCAATCTGGATCCCTCGCTACCACGA
CCGTTGGTGGAACGACAGCCAACACGACAACGGTGGGCGGCGGCGGCACC
TATTACGACGATGATGGCTGCGATGATTCCACCTGGCAAACGCTCGACTA
CGACGAGCTGTCGCTCGATCTCAGTCTCGCGGGGCATCACAACAGTGGTA
GCTGTGGTGGTACTGGTCCGACGCTAGCCGCTGGATGTCACATGGCCCAG
GGCCTGGTGGAACAAACGGGGTGCGGTCAACTGGAGAGCTTCTTGTGCGG
CGCCGCCACGACCAATTCAAAGTCAAAGTCGTCGTCGTACGCGGCCCAAT
CCAAGCTCGAACAGCAGCAGGGCCAGCGCATTCGCGACCTAAAGTTCACC
AATGCCAAATTGCTGGCGCGCACGGCCGAGCTGCAGGAGGAAAATGCGGC
CGCGCAGCTCAAGGTCCAAAAGATTTTGCGCGTGTCGGACGTGGGGGCGC
TGCAAAAGCGCTGCCAGGGCGCCGAGCTCCACAACCAGCAGCTGCAGGCG
CAAATTATGGAGCTCAAGGCCGTGGCGGAAATGAGCAAGCTCGATCGCCA
CGCCACCAATATGACAAATACAACAACACCAGCGGCAAACAATGCCCAAG
CAGCGAGTAGTGTGGCCACGTCCACGGCATGTGTGGCTCCAACCTCGTTA
ACGACACCAGCGGATTCAACAAATACGGCTCGGGGCGGCGTTGCGACTGG
CAGCAGCACGACCTGCAACTGCAACGTGGCTGGCTTGCAAAAGGAACTGC
GGCACGTACAGGAGGTGTCTAGCACGCAACGGGACGAAAATGTGCGGCTA
CCGGAGCAGGTGGACCAGCTCACGGAAAGCCTCCAGTCGCTGCAAGCGAA
AATTACCCACAACAGCAAGGATGCCGAGCTGGAAGCGGCGCTGTCCGAAA
CGAAGAAACTCCGGGACGAGCACGACGCTGTCGTCAAAAAGCACGAGGCA
GCGCTCAAGAGTGCGGCCGAGTCGAGCTTGGAAACGGAACTTGAGCTCAA
GCGCCAGATCGAAGAGCTGCGGTGTATCACCGCCGCTACTGTAACTGCTA
CGGAACAGCAGCCACCTCCAGCAGCAGCGGATGCCGCCAATATCAATTTG
CTCAGTCAGCGGGACGATACCATTTGCGATTTGCGGCAGCGGTGCATGGA
GTACAGCAAGCAATTGACGGCGCTGCAGGAACAAGCGAGTGCAAACAAGC
AGTTAAATGACAGTGGCGTTcagaaacagcaggagcagcagcggcagcag
caggagcaATTGGTCGAGAAATTGCAAGCAGAGCTCGAGAAACTGCACCT
GGAGCTCGAGGAACTGCAAAAGGAGCTGGAATGCTCGGACGAAAAGCTGG
GCTTTGAGCAGCAAAATGTCGAAGTCTTGCAAGTGAACCTGGACGAGTCG
CAAAATACGGTCGACGCGTTGAGACTGGAGCTCGAAAAATCCAAGCAGAA
GTACAACAAGCAATTGACGACGCTTTATAATGCGGCCAAAGCGAACGACG
AAAAGCTGGAGCTCGAGCAGCAAACAGTGGTGGAACTTCGGCAAGGACTG
AACGAGTCCAAGGAAGCGAACGACGCCTTGAGGCAAGAGCTAGAGTGCAC
AAAGTCCACGGGTGCAACTGAATTGCAAAAGTCGGTTGCCAAGTTGGAAC
TAGAGCAGCAGACGGTTGAAGATGTGCAGCATGAGTTGGACGAAGCGCAA
TGCGCTGTCGAGTCGTTGCGGAAAgagctgggacgctgcgcaggcggtgg
ggaactaccaatgctattattaccaaaagtactacagtgttggagagcgg
cagcgattttag
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Coding sequence (CDS) from alignment at ScGOVlb_870:220..2431+

>Gvermi14406.t1 ID=Gvermi14406.t1|Name=Gvermi14406.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2136bp|location=Sequence derived from alignment at ScGOVlb_870:220..2431+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTCCCACAGCAATAGCAACCACAGCAGAAAGAGCGGCAACAAAAG
CACTGCTTCTTCTGCTTCTGGCAAGGCGCAGAGTGGTAGTGGCTACAATT
GGTTCGTCGAAGGTACCCTCGATGCCTTTGGCGTAGGAACAGCGTCGGTT
GCCAAAGCTGCTGCTGCGCCGGCCGTGGTATCTCCCGAAAAGCCCCTCCT
GCCGTCCAAGACCAACAGCAACAACAAGACCAATAATCAGCATCACCGAA
TCACCGCACTGggaggtggtggtgctggtggtgctgCCGCTCGATCGCGC
TCCTCCAGCGCCCCGCGAGCCGCGCAGTCTCGAAGAACCTTTGGCGGCAC
AATAACCTCGGCGGGCACCAGCGTTCAATCTGGATCCCTCGCTACCACGA
CCGTTGGTGGAACGACAGCCAACACGACAACGGTGGGCGGCGGCGGCACC
TATTACGACGATGATGGCTGCGATGATTCCACCTGGCAAACGCTCGACTA
CGACGAGCTGTCGCTCGATCTCAGTCTCGCGGGGCATCACAACAGTGGTA
GCTGTGGTGGTACTGGTCCGACGCTAGCCGCTGGATGTCACATGGCCCAG
GGCCTGGTGGAACAAACGGGGTGCGGTCAACTGGAGAGCTTCTTGTGCGG
CGCCGCCACGACCAATTCAAAGTCAAAGTCGTCGTCGTACGCGGCCCAAT
CCAAGCTCGAACAGCAGCAGGGCCAGCGCATTCGCGACCTAAAGTTCACC
AATGCCAAATTGCTGGCGCGCACGGCCGAGCTGCAGGAGGAAAATGCGGC
CGCGCAGCTCAAGGTCCAAAAGATTTTGCGCGTGTCGGACGTGGGGGCGC
TGCAAAAGCGCTGCCAGGGCGCCGAGCTCCACAACCAGCAGCTGCAGGCG
CAAATTATGGAGCTCAAGGCCGTGGCGGAAATGAGCAAGCTCGATCGCCA
CGCCACCAATATGACAAATACAACAACACCAGCGGCAAACAATGCCCAAG
CAGCGAGTAGTGTGGCCACGTCCACGGCATGTGTGGCTCCAACCTCGTTA
ACGACACCAGCGGATTCAACAAATACGGCTCGGGGCGGCGTTGCGACTGG
CAGCAGCACGACCTGCAACTGCAACGTGGCTGGCTTGCAAAAGGAACTGC
GGCACGTACAGGAGGTGTCTAGCACGCAACGGGACGAAAATGTGCGGCTA
CCGGAGCAGGTGGACCAGCTCACGGAAAGCCTCCAGTCGCTGCAAGCGAA
AATTACCCACAACAGCAAGGATGCCGAGCTGGAAGCGGCGCTGTCCGAAA
CGAAGAAACTCCGGGACGAGCACGACGCTGTCGTCAAAAAGCACGAGGCA
GCGCTCAAGAGTGCGGCCGAGTCGAGCTTGGAAACGGAACTTGAGCTCAA
GCGCCAGATCGAAGAGCTGCGGTGTATCACCGCCGCTACTGTAACTGCTA
CGGAACAGCAGCCACCTCCAGCAGCAGCGGATGCCGCCAATATCAATTTG
CTCAGTCAGCGGGACGATACCATTTGCGATTTGCGGCAGCGGTGCATGGA
GTACAGCAAGCAATTGACGGCGCTGCAGGAACAAGCGAGTGCAAACAAGC
AGTTAAATGACAGTGGCGTTcagaaacagcaggagcagcagcggcagcag
caggagcaATTGGTCGAGAAATTGCAAGCAGAGCTCGAGAAACTGCACCT
GGAGCTCGAGGAACTGCAAAAGGAGCTGGAATGCTCGGACGAAAAGCTGG
GCTTTGAGCAGCAAAATGTCGAAGTCTTGCAAGTGAACCTGGACGAGTCG
CAAAATACGGTCGACGCGTTGAGACTGGAGCTCGAAAAATCCAAGCAGAA
GTACAACAAGCAATTGACGACGCTTTATAATGCGGCCAAAGCGAACGACG
AAAAGCTGGAGCTCGAGCAGCAAACAGTGGTGGAACTTCGGCAAGGACTG
AACGAGTCCAAGGAAGCGAACGACGCCTTGAGGCAAGAGCTAGAGTGCAC
AAAGTCCACGGGTGCAACTGAATTGCAAAAGTCGGTTGCCAAGTTGGAAC
TAGAGCAGCAGACGGTTGAAGATGTGCAGCATGAGTTGGACGAAGCGCAA
TGCGCTGTCGAtgttggagagcggcagcgattttag
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