Gvermi14165.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi14165.t1
Unique NameGvermi14165.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length251
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_359contigScGOVlb_359:2639..3391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi14165Gvermi14165Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_359 2639..3391 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi14165.t1.start1Gvermi14165.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_359 2639..2641 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi14165.t1.CDS1Gvermi14165.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_359 2639..3391 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi14165.t1.exon1Gvermi14165.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_359 2639..3391 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi14165.t1.stop1Gvermi14165.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_359 3389..3391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi14165.t1Gvermi14165.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_359 2639..3391 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi14165.t1 ID=Gvermi14165.t1|Name=Gvermi14165.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=251bp
MEEDLSPEKERRNDRNSIVSEQRAELKRVQRLILNLWKRRYYDQSSEFEE
TYQKLSLSTTEPSDADFKMMSDIVRRIQTEKPTPMQLEENEVTPLTRLTF
EDLVGPPPIKPVSPMLELADDEEIEDYQRALSKWKAETQEYRELKRRYNR
NPRRKRMVLKRRGEMPDPFEELELFDDDDDNDDSYGGGRGRFYSEPARPE
PPRQRLYQRRDDVDDDDNVVLELYDEDYEGNADPFSAIRDYERKQGRNLK
*
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spliced messenger RNA

>Gvermi14165.t1 ID=Gvermi14165.t1|Name=Gvermi14165.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=753bp|location=Sequence derived from alignment at ScGOVlb_359:2639..3391+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGAGGATTTGAGCCCCGAAAAGGAGCGGCGAAATGATCGAAACTC
CATTGTCTCAGAGCAACGCGCGGAGCTGAAGCGTGTACAAAGACTTATCT
TGAACCTCTGGAAACGTCGTTATTACGACCAAAGCTCAGAGTTTGAAGAA
ACGTACCAAAAATTGTCACTATCGACCACGGAACCGTCAGATGCTGATTT
CAAAATGATGAGTGATATTGTTCGACGCATCCAAACGGAAAAACCTACAC
CAATGCAACTGGAAGAAAATGAGGTCACGCCTCTGACGCGGTTGACGTTT
GAAGACTTGGTAGGCCCCCCGCCCATTAAGCCAGTATCACCCATGTTAGA
ATTGGCAGACGACGAAGAGATTGAAGACTATCAACGCGCGTTGTCAAAGT
GGAAAGCCGAAACGCAAGAGTACAGAGAGTTGAAACGTCGATACAATAGG
AATCCGCGTCGCAAACGAATGGTACTCAAAAGACGCGGTGAGATGCCTGA
TCCATTTGAAGAGCTGGAGCTGTTTgacgacgacgacgacaacgatgacT
CCTACGGTGGAGGAAGAGGGCGGTTTTATTCCGAACCCGCACGCCCTGAA
CCTCCGCGTCAACGATTGTATCAACGTCGCGACGATGTTGATGATGATGA
CAATGTCGTTCTGGAACTGTACGATGAAGATTACGAAGGAAATGCTGATC
CATTTTCAGCAATTCGTGATTATGAACGCAAACAAGGTCGTAATCTCAAG
TAA
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protein sequence of Gvermi14165.t1

>Gvermi14165.t1 ID=Gvermi14165.t1|Name=Gvermi14165.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=251bp
MEEDLSPEKERRNDRNSIVSEQRAELKRVQRLILNLWKRRYYDQSSEFEE
TYQKLSLSTTEPSDADFKMMSDIVRRIQTEKPTPMQLEENEVTPLTRLTF
EDLVGPPPIKPVSPMLELADDEEIEDYQRALSKWKAETQEYRELKRRYNR
NPRRKRMVLKRRGEMPDPFEELELFDDDDDNDDSYGGGRGRFYSEPARPE
PPRQRLYQRRDDVDDDDNVVLELYDEDYEGNADPFSAIRDYERKQGRNLK
*
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mRNA from alignment at ScGOVlb_359:2639..3391+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi14165.t1 ID=Gvermi14165.t1|Name=Gvermi14165.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=753bp|location=Sequence derived from alignment at ScGOVlb_359:2639..3391+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGGAGGATTTGAGCCCCGAAAAGGAGCGGCGAAATGATCGAAACTC
CATTGTCTCAGAGCAACGCGCGGAGCTGAAGCGTGTACAAAGACTTATCT
TGAACCTCTGGAAACGTCGTTATTACGACCAAAGCTCAGAGTTTGAAGAA
ACGTACCAAAAATTGTCACTATCGACCACGGAACCGTCAGATGCTGATTT
CAAAATGATGAGTGATATTGTTCGACGCATCCAAACGGAAAAACCTACAC
CAATGCAACTGGAAGAAAATGAGGTCACGCCTCTGACGCGGTTGACGTTT
GAAGACTTGGTAGGCCCCCCGCCCATTAAGCCAGTATCACCCATGTTAGA
ATTGGCAGACGACGAAGAGATTGAAGACTATCAACGCGCGTTGTCAAAGT
GGAAAGCCGAAACGCAAGAGTACAGAGAGTTGAAACGTCGATACAATAGG
AATCCGCGTCGCAAACGAATGGTACTCAAAAGACGCGGTGAGATGCCTGA
TCCATTTGAAGAGCTGGAGCTGTTTgacgacgacgacgacaacgatgacT
CCTACGGTGGAGGAAGAGGGCGGTTTTATTCCGAACCCGCACGCCCTGAA
CCTCCGCGTCAACGATTGTATCAACGTCGCGACGATGTTGATGATGATGA
CAATGTCGTTCTGGAACTGTACGATGAAGATTACGAAGGAAATGCTGATC
CATTTTCAGCAATTCGTGATTATGAACGCAAACAAGGTCGTAATCTCAAG
TAA
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Coding sequence (CDS) from alignment at ScGOVlb_359:2639..3391+

>Gvermi14165.t1 ID=Gvermi14165.t1|Name=Gvermi14165.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=753bp|location=Sequence derived from alignment at ScGOVlb_359:2639..3391+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGGAGGATTTGAGCCCCGAAAAGGAGCGGCGAAATGATCGAAACTC
CATTGTCTCAGAGCAACGCGCGGAGCTGAAGCGTGTACAAAGACTTATCT
TGAACCTCTGGAAACGTCGTTATTACGACCAAAGCTCAGAGTTTGAAGAA
ACGTACCAAAAATTGTCACTATCGACCACGGAACCGTCAGATGCTGATTT
CAAAATGATGAGTGATATTGTTCGACGCATCCAAACGGAAAAACCTACAC
CAATGCAACTGGAAGAAAATGAGGTCACGCCTCTGACGCGGTTGACGTTT
GAAGACTTGGTAGGCCCCCCGCCCATTAAGCCAGTATCACCCATGTTAGA
ATTGGCAGACGACGAAGAGATTGAAGACTATCAACGCGCGTTGTCAAAGT
GGAAAGCCGAAACGCAAGAGTACAGAGAGTTGAAACGTCGATACAATAGG
AATCCGCGTCGCAAACGAATGGTACTCAAAAGACGCGGTGAGATGCCTGA
TCCATTTGAAGAGCTGGAGCTGTTTgacgacgacgacgacaacgatgacT
CCTACGGTGGAGGAAGAGGGCGGTTTTATTCCGAACCCGCACGCCCTGAA
CCTCCGCGTCAACGATTGTATCAACGTCGCGACGATGTTGATGATGATGA
CAATGTCGTTCTGGAACTGTACGATGAAGATTACGAAGGAAATGCTGATC
CATTTTCAGCAATTCGTGATTATGAACGCAAACAAGGTCGTAATCTCAAG
TAA
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