Gvermi13984.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13984.t1
Unique NameGvermi13984.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length212
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:1499572..1500207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121422.AUMW01000002_gene2238
PFAMsPG_binding_1,Peptidase_M15_3,Transglycosylas
Max annot lvl2|Bacteria
KEGG koko:K08640
Evalue1.85e-25
EggNOG OGsCOG3108@1|root,COG3409@1|root,COG3108@2|Bacteria,COG3409@2|Bacteria
EC3.4.17.14
DescriptionPeptidoglycan-binding domain 1 protein
COG categoryM
BRITEko00000,ko01000,ko01002,ko01011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13984Gvermi13984Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 1499572..1500207 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13984.t1.start1Gvermi13984.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 1499572..1499574 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13984.t1.CDS1Gvermi13984.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 1499572..1500207 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13984.t1.exon1Gvermi13984.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 1499572..1500207 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13984.t1.stop1Gvermi13984.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 1500205..1500207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13984.t1Gvermi13984.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 1499572..1500207 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13984.t1 ID=Gvermi13984.t1|Name=Gvermi13984.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=212bp
MANHVLTLVCVSLICFSRAVAIPTDRSVIIKVQRDLRTIGWPISIDGDYG
SATTAAVKHFQAGWTFKSLVADGDAGPLTRPEIARCAAAGGYASQHFKYS
EFKSKGNGDIKVARELLLALEKLRAAMGGKSLKIVSGYRDPAHNDNVGGA
RSSQHLFGTAADIPQGYGATVASVKQLKVFTGIGIKCNKWVTHVDVRPGD
PSRPTTWQYPC*
back to top

spliced messenger RNA

>Gvermi13984.t1 ID=Gvermi13984.t1|Name=Gvermi13984.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=636bp|location=Sequence derived from alignment at ScGOVlb_647:1499572..1500207+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAATCACGTACTCACTCTCGTATGCGTTTCTCTCATCTGTTTCAG
CCGTGCGGTAGCGATTCCAACCGACCGCAGTGTGATCATCAAAGTGCAAC
GTGACCTCCGAACAATAGGGTGGCCAATCTCTATCGACGGTGATTACGGA
TCGGCCACCACCGCTGCCGTTAAACACTTTCAAGCTGGCTGGACGTTCAA
ATCACTTGTCGCTGATGGAGATGCAGGACCGCTCACACGCCCAGAAATAG
CCAGATGCGCTGCCGCGGGCGGTTACGCTAGTCAGCACTTTAAGTATTCT
GAGTTCAAATCCAAAGGCAATGGCGATATCAAAGTGGCACGCGAGTTGTT
ACTGGCGCTCGAGAAGCTTAGGGCAGCAATGGGAGGCAAGTCACTCAAAA
TCGTGTCTGGGTACCGCGATCCAGCGCATAACGATAATGTGGGAGGAGCA
AGAAGTTCTCAACACCTTTTCGGAACTGCAGCAGATATTCCGCAAGGCTA
CGGGGCTACTGTTGCTTCTGTCAAGCAATTGAAAGTATTTACCGGCATTG
GAATTAAGTGTAATAAATGGGTTACACACGTAGATGTACGTCCAGGAGAT
CCGTCTAGACCCACAACCTGGCAATATCCTTGTTAA
back to top

protein sequence of Gvermi13984.t1

>Gvermi13984.t1 ID=Gvermi13984.t1|Name=Gvermi13984.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=212bp
MANHVLTLVCVSLICFSRAVAIPTDRSVIIKVQRDLRTIGWPISIDGDYG
SATTAAVKHFQAGWTFKSLVADGDAGPLTRPEIARCAAAGGYASQHFKYS
EFKSKGNGDIKVARELLLALEKLRAAMGGKSLKIVSGYRDPAHNDNVGGA
RSSQHLFGTAADIPQGYGATVASVKQLKVFTGIGIKCNKWVTHVDVRPGD
PSRPTTWQYPC*
back to top

mRNA from alignment at ScGOVlb_647:1499572..1500207+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13984.t1 ID=Gvermi13984.t1|Name=Gvermi13984.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=636bp|location=Sequence derived from alignment at ScGOVlb_647:1499572..1500207+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAAATCACGTACTCACTCTCGTATGCGTTTCTCTCATCTGTTTCAG
CCGTGCGGTAGCGATTCCAACCGACCGCAGTGTGATCATCAAAGTGCAAC
GTGACCTCCGAACAATAGGGTGGCCAATCTCTATCGACGGTGATTACGGA
TCGGCCACCACCGCTGCCGTTAAACACTTTCAAGCTGGCTGGACGTTCAA
ATCACTTGTCGCTGATGGAGATGCAGGACCGCTCACACGCCCAGAAATAG
CCAGATGCGCTGCCGCGGGCGGTTACGCTAGTCAGCACTTTAAGTATTCT
GAGTTCAAATCCAAAGGCAATGGCGATATCAAAGTGGCACGCGAGTTGTT
ACTGGCGCTCGAGAAGCTTAGGGCAGCAATGGGAGGCAAGTCACTCAAAA
TCGTGTCTGGGTACCGCGATCCAGCGCATAACGATAATGTGGGAGGAGCA
AGAAGTTCTCAACACCTTTTCGGAACTGCAGCAGATATTCCGCAAGGCTA
CGGGGCTACTGTTGCTTCTGTCAAGCAATTGAAAGTATTTACCGGCATTG
GAATTAAGTGTAATAAATGGGTTACACACGTAGATGTACGTCCAGGAGAT
CCGTCTAGACCCACAACCTGGCAATATCCTTGTTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_647:1499572..1500207+

>Gvermi13984.t1 ID=Gvermi13984.t1|Name=Gvermi13984.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=636bp|location=Sequence derived from alignment at ScGOVlb_647:1499572..1500207+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAAATCACGTACTCACTCTCGTATGCGTTTCTCTCATCTGTTTCAG
CCGTGCGGTAGCGATTCCAACCGACCGCAGTGTGATCATCAAAGTGCAAC
GTGACCTCCGAACAATAGGGTGGCCAATCTCTATCGACGGTGATTACGGA
TCGGCCACCACCGCTGCCGTTAAACACTTTCAAGCTGGCTGGACGTTCAA
ATCACTTGTCGCTGATGGAGATGCAGGACCGCTCACACGCCCAGAAATAG
CCAGATGCGCTGCCGCGGGCGGTTACGCTAGTCAGCACTTTAAGTATTCT
GAGTTCAAATCCAAAGGCAATGGCGATATCAAAGTGGCACGCGAGTTGTT
ACTGGCGCTCGAGAAGCTTAGGGCAGCAATGGGAGGCAAGTCACTCAAAA
TCGTGTCTGGGTACCGCGATCCAGCGCATAACGATAATGTGGGAGGAGCA
AGAAGTTCTCAACACCTTTTCGGAACTGCAGCAGATATTCCGCAAGGCTA
CGGGGCTACTGTTGCTTCTGTCAAGCAATTGAAAGTATTTACCGGCATTG
GAATTAAGTGTAATAAATGGGTTACACACGTAGATGTACGTCCAGGAGAT
CCGTCTAGACCCACAACCTGGCAATATCCTTGTTAA
back to top