Gvermi13983.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13983.t1
Unique NameGvermi13983.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length271
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:1438369..1439311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13983Gvermi13983Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 1438369..1439311 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13983.t1Gvermi13983.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 1438369..1439311 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13983.t1.stop1Gvermi13983.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 1438369..1438371 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13983.t1.CDS1Gvermi13983.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 1438369..1438401 -
Gvermi13983.t1.CDS2Gvermi13983.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 1438532..1439311 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13983.t1.exon1Gvermi13983.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 1438369..1438401 -
Gvermi13983.t1.exon2Gvermi13983.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 1438532..1439311 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13983.t1.intron1Gvermi13983.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_647 1438402..1438531 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13983.t1.start1Gvermi13983.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 1439309..1439311 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13983.t1 ID=Gvermi13983.t1|Name=Gvermi13983.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=271bp
MGALHLSTAIWVANLLRFVIVETAITLIAVPLFTKTLENLCKRGVTSGQA
IQERKIDLGWLTPVSVAYYRIRTQTLLTLPQRGNELNPQNWDEVKRFIAV
AVKLVIINALLLTAYFSIEISADAVSEKVLVKRPIMHHSNLKRSLAEVTV
HPIRLLKRVIEVQNCTQDGDALHFQTAEGLCRARELGPSAWATLRGRKGE
FLESNGNQSLIQTGSWTNDTFEATTISIEGHEDTIFFWSNNQVYMYCHDL
REKVGLEVGLVSNWVKHMEP*
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spliced messenger RNA

>Gvermi13983.t1 ID=Gvermi13983.t1|Name=Gvermi13983.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=813bp|location=Sequence derived from alignment at ScGOVlb_647:1438369..1439311- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGCGCTGCATCTTTCTACCGCAATCTGGGTCGCCAATTTATTGAG
ATTTGTCATTGTGGAGACGGCAATTACATTGATTGCGGTCCCGCTGTTCA
CAAAAACTTTGGAAAACTTATGCAAACGCGGGGTCACATCCGGGCAAGCC
ATCCAAGAGCGCAAGATTGATTTGGGATGGCTGACGCCGGTTTCCGTAGC
GTATTATAGAATAAGGACACAAACACTGCTGACTCTTCCACAACGAGGAA
ACGAACTGAACCCTCAAAATTGGGATGAAGTGAAGCGATTCATTGCCGTT
GCCGTAAAACTAGTGATCATTAACGCGTTGCTTCTCACAGCCTATTTTTC
CATTGAAATCTCTGCTGATGCAGTCAGTGAGAAAGTGCTAGTCAAGCGAC
CTATCATGCATCATTCTAATCTCAAGCGCTCTTTGGCTGAAGTTACTGTT
CATCCCATCCGACTACTAAAGCGCGTGATCGAAGTCCAAAATTGCACTCA
GGATGGGGATGCACTCCACTTTCAAACAGCTGAAGGCCTCTGTCGAGCTC
GAGAATTGGGGCCTAGTGCTTGGGCAACCCTTAGAGGAAGAAAAGGGGAA
TTCTTGGAGAGTAATGGCAACCAGAGTCTGATACAAACTGGAAGCTGGAC
GAATGACACGTTTGAAGCTACAACCATCAGTATAGAAGGACATGAGGACA
CCATTTTCTTTTGGAGTAACAATCAAGTCTACATGTACTGTCATGACTTG
AGAGAAAAAGTGGGTTTAGAGGTTGGTTTGGTGTCAAATTGGGTGAAACA
CATGGAGCCTTAA
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protein sequence of Gvermi13983.t1

>Gvermi13983.t1 ID=Gvermi13983.t1|Name=Gvermi13983.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=271bp
MGALHLSTAIWVANLLRFVIVETAITLIAVPLFTKTLENLCKRGVTSGQA
IQERKIDLGWLTPVSVAYYRIRTQTLLTLPQRGNELNPQNWDEVKRFIAV
AVKLVIINALLLTAYFSIEISADAVSEKVLVKRPIMHHSNLKRSLAEVTV
HPIRLLKRVIEVQNCTQDGDALHFQTAEGLCRARELGPSAWATLRGRKGE
FLESNGNQSLIQTGSWTNDTFEATTISIEGHEDTIFFWSNNQVYMYCHDL
REKVGLEVGLVSNWVKHMEP*
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mRNA from alignment at ScGOVlb_647:1438369..1439311-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13983.t1 ID=Gvermi13983.t1|Name=Gvermi13983.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=943bp|location=Sequence derived from alignment at ScGOVlb_647:1438369..1439311- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGAGCGCTGCATCTTTCTACCGCAATCTGGGTCGCCAATTTATTGAG
ATTTGTCATTGTGGAGACGGCAATTACATTGATTGCGGTCCCGCTGTTCA
CAAAAACTTTGGAAAACTTATGCAAACGCGGGGTCACATCCGGGCAAGCC
ATCCAAGAGCGCAAGATTGATTTGGGATGGCTGACGCCGGTTTCCGTAGC
GTATTATAGAATAAGGACACAAACACTGCTGACTCTTCCACAACGAGGAA
ACGAACTGAACCCTCAAAATTGGGATGAAGTGAAGCGATTCATTGCCGTT
GCCGTAAAACTAGTGATCATTAACGCGTTGCTTCTCACAGCCTATTTTTC
CATTGAAATCTCTGCTGATGCAGTCAGTGAGAAAGTGCTAGTCAAGCGAC
CTATCATGCATCATTCTAATCTCAAGCGCTCTTTGGCTGAAGTTACTGTT
CATCCCATCCGACTACTAAAGCGCGTGATCGAAGTCCAAAATTGCACTCA
GGATGGGGATGCACTCCACTTTCAAACAGCTGAAGGCCTCTGTCGAGCTC
GAGAATTGGGGCCTAGTGCTTGGGCAACCCTTAGAGGAAGAAAAGGGGAA
TTCTTGGAGAGTAATGGCAACCAGAGTCTGATACAAACTGGAAGCTGGAC
GAATGACACGTTTGAAGCTACAACCATCAGTATAGAAGGACATGAGGACA
CCATTTTCTTTTGGAGTAACAATCAAGTCTACATGTACTGTCATGACTTG
AGAGAAAAAGTGGGTTTAGAGGTTGGTTTGGTAAGTGGGCACTGCGCCGT
CATGCTGAAAGACGCACCGGATATTCTGCATCTTGTTAAAGTGCATCGCA
CAACTAATGTGTCAGACTTAAAGCTAACCGTTGACCGATCTGAGTATACT
GACGTGTTAGGTGTCAAATTGGGTGAAACACATGGAGCCTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_647:1438369..1439311-

>Gvermi13983.t1 ID=Gvermi13983.t1|Name=Gvermi13983.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=813bp|location=Sequence derived from alignment at ScGOVlb_647:1438369..1439311- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGAGCGCTGCATCTTTCTACCGCAATCTGGGTCGCCAATTTATTGAG
ATTTGTCATTGTGGAGACGGCAATTACATTGATTGCGGTCCCGCTGTTCA
CAAAAACTTTGGAAAACTTATGCAAACGCGGGGTCACATCCGGGCAAGCC
ATCCAAGAGCGCAAGATTGATTTGGGATGGCTGACGCCGGTTTCCGTAGC
GTATTATAGAATAAGGACACAAACACTGCTGACTCTTCCACAACGAGGAA
ACGAACTGAACCCTCAAAATTGGGATGAAGTGAAGCGATTCATTGCCGTT
GCCGTAAAACTAGTGATCATTAACGCGTTGCTTCTCACAGCCTATTTTTC
CATTGAAATCTCTGCTGATGCAGTCAGTGAGAAAGTGCTAGTCAAGCGAC
CTATCATGCATCATTCTAATCTCAAGCGCTCTTTGGCTGAAGTTACTGTT
CATCCCATCCGACTACTAAAGCGCGTGATCGAAGTCCAAAATTGCACTCA
GGATGGGGATGCACTCCACTTTCAAACAGCTGAAGGCCTCTGTCGAGCTC
GAGAATTGGGGCCTAGTGCTTGGGCAACCCTTAGAGGAAGAAAAGGGGAA
TTCTTGGAGAGTAATGGCAACCAGAGTCTGATACAAACTGGAAGCTGGAC
GAATGACACGTTTGAAGCTACAACCATCAGTATAGAAGGACATGAGGACA
CCATTTTCTTTTGGAGTAACAATCAAGTCTACATGTACTGTCATGACTTG
AGAGAAAAAGTGGGTTTAGAGGTTGGTTTGGTGTCAAATTGGGTGAAACA
CATGGAGCCTTAA
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