Gvermi13981.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13981.t1
Unique NameGvermi13981.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length385
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:1383140..1384294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDP06004
PFAMsC2,Copine
Max annot lvl3041|Chlorophyta
Evalue6.72e-07
EggNOG OGsKOG1327@1|root,KOG1327@2759|Eukaryota,37MKV@33090|Viridiplantae,34J60@3041|Chlorophyta
DescriptionCopine
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13981Gvermi13981Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 1383140..1384294 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13981.t1.stop1Gvermi13981.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 1383140..1383142 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13981.t1.CDS1Gvermi13981.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 1383140..1384294 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13981.t1.exon1Gvermi13981.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 1383140..1384294 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13981.t1.start1Gvermi13981.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 1384292..1384294 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13981.t1Gvermi13981.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 1383140..1384294 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13981.t1 ID=Gvermi13981.t1|Name=Gvermi13981.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=385bp
MIDSSNSDFGGGVGNGELVQTPSTEILGGTMVESEGEDFDEAEKAPPRLP
SAYRAKPSVIEFSPVSNQGADVFDTGEEEKILDPCGLSPRGVLNKGVPAL
IESLRFDALELHVEGFETTRLELFGPAECFAVLFSEGSVPGTWELTDRSE
TVRCAQHIRLLKKFRLRAATEVDRSEKIMLAFFDANTPAHLLEPANALGH
GTFSAAELIESKELAVERQLRKEGWSFWGDAHVVLSLDFLKHVSLKENIC
IEFGLDDESPRMNRMFFIISRSLPQGTWSPIYKSEVRMRNEADRFERVCI
AAQDFHGGDESRNFRLELHRWYKNGRTRALGFMQTSVQKLKSLESNSSMY
WWPAEDGISCAKIIVLQALTSPCEAHFNLMLSAS*
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spliced messenger RNA

>Gvermi13981.t1 ID=Gvermi13981.t1|Name=Gvermi13981.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1155bp|location=Sequence derived from alignment at ScGOVlb_647:1383140..1384294- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGACAGCTCCAACTCGGATTTTGGGGGCGGAGTAGGGAATGGAGA
ACTTGTTCAAACCCCCAGCACCGAAATTCTCGGAGGAACGATGGTGGAAT
CGGAAGGCGAAGACTTCGACGAAGCTGAAAAGGCGCCGCCAAGGTTACCT
TCCGCGTACCGGGCAAAGCCGTCAGTGATTGAGTTTTCACCCGTCTCAAA
CCAAGGTGCGGACGTGTTTGACACCGGTGAAGAAGAGAAAATTTTGGATC
CTTGCGGCTTGTCTCCGCGCGGGGTACTGAACAAGGGGGTGCCAGCTCTA
ATAGAGTCGTTGAGGTTTGATGCCCTGGAGCTGCATGTGGAAGGGTTTGA
AACGACGCGTTTGGAGTTGTTTGGGCCTGCGGAGTGCTTTGCGGTGTTGT
TCAGCGAAGGCTCTGTGCCAGGGACCTGGGAGCTGACGGACAGAAGCGAA
ACAGTGAGGTGCGCACAACACATCCGGCTGCTCAAGAAGTTTCGGCTGCG
AGCGGCCACCGAGGTGGACCGGTCGGAGAAAATCATGCTTGCGTTCTTCG
ACGCAAACACACCGGCGCACCTGCTGGAGCCGGCGAACGCCCTCGGGCAC
GGCACATTTTCAGCGGCGGAGCTCATCGAGTCCAAGGAGCTCGCTGTGGA
GCGGCAGCTGCGGAAAGAGGGGTGGAGCTTTTGGGGCGACGCGCACGTTG
TTTTGTCGCTCGACTTTCTCAAGCACGTGTCGCTGAAGGAGAACATCTGC
ATCGAGTTTGGGCTCGACGACGAGTCGCCGCGAATGAATCGCATGTTCTT
CATCATCTCGCGCAGCTTGCCGCAGGGGACGTGGTCGCCGATCTACAAGT
CAGAGGTGCGCATGCGCAACGAGGCGGACAGGTTCGAACGCGTGTGCATT
GCAGCTCAGGATTTCCACGGCGGTGATGAGTCGAGAAACTTTCGACTTGA
GCTGCACCGGTGGTACAAGAACGGGAGGACAAGGGCGTTGGGGTTTATGC
AGACGTCGGTCCAGAAGCTGAAGAGTCTAGAGTCGAACAGCAGTATGTAC
TGGTGGCCGGCTGAAGACGGAATCAGTTGTGCAAAGATCATCGTTCTCCA
GGCGTTGACGTCGCCGTGCGAGGCCCATTTCAACTTGATGCTATCGGCGT
CGTGA
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protein sequence of Gvermi13981.t1

>Gvermi13981.t1 ID=Gvermi13981.t1|Name=Gvermi13981.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=385bp
MIDSSNSDFGGGVGNGELVQTPSTEILGGTMVESEGEDFDEAEKAPPRLP
SAYRAKPSVIEFSPVSNQGADVFDTGEEEKILDPCGLSPRGVLNKGVPAL
IESLRFDALELHVEGFETTRLELFGPAECFAVLFSEGSVPGTWELTDRSE
TVRCAQHIRLLKKFRLRAATEVDRSEKIMLAFFDANTPAHLLEPANALGH
GTFSAAELIESKELAVERQLRKEGWSFWGDAHVVLSLDFLKHVSLKENIC
IEFGLDDESPRMNRMFFIISRSLPQGTWSPIYKSEVRMRNEADRFERVCI
AAQDFHGGDESRNFRLELHRWYKNGRTRALGFMQTSVQKLKSLESNSSMY
WWPAEDGISCAKIIVLQALTSPCEAHFNLMLSAS*
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mRNA from alignment at ScGOVlb_647:1383140..1384294-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13981.t1 ID=Gvermi13981.t1|Name=Gvermi13981.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1155bp|location=Sequence derived from alignment at ScGOVlb_647:1383140..1384294- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATTGACAGCTCCAACTCGGATTTTGGGGGCGGAGTAGGGAATGGAGA
ACTTGTTCAAACCCCCAGCACCGAAATTCTCGGAGGAACGATGGTGGAAT
CGGAAGGCGAAGACTTCGACGAAGCTGAAAAGGCGCCGCCAAGGTTACCT
TCCGCGTACCGGGCAAAGCCGTCAGTGATTGAGTTTTCACCCGTCTCAAA
CCAAGGTGCGGACGTGTTTGACACCGGTGAAGAAGAGAAAATTTTGGATC
CTTGCGGCTTGTCTCCGCGCGGGGTACTGAACAAGGGGGTGCCAGCTCTA
ATAGAGTCGTTGAGGTTTGATGCCCTGGAGCTGCATGTGGAAGGGTTTGA
AACGACGCGTTTGGAGTTGTTTGGGCCTGCGGAGTGCTTTGCGGTGTTGT
TCAGCGAAGGCTCTGTGCCAGGGACCTGGGAGCTGACGGACAGAAGCGAA
ACAGTGAGGTGCGCACAACACATCCGGCTGCTCAAGAAGTTTCGGCTGCG
AGCGGCCACCGAGGTGGACCGGTCGGAGAAAATCATGCTTGCGTTCTTCG
ACGCAAACACACCGGCGCACCTGCTGGAGCCGGCGAACGCCCTCGGGCAC
GGCACATTTTCAGCGGCGGAGCTCATCGAGTCCAAGGAGCTCGCTGTGGA
GCGGCAGCTGCGGAAAGAGGGGTGGAGCTTTTGGGGCGACGCGCACGTTG
TTTTGTCGCTCGACTTTCTCAAGCACGTGTCGCTGAAGGAGAACATCTGC
ATCGAGTTTGGGCTCGACGACGAGTCGCCGCGAATGAATCGCATGTTCTT
CATCATCTCGCGCAGCTTGCCGCAGGGGACGTGGTCGCCGATCTACAAGT
CAGAGGTGCGCATGCGCAACGAGGCGGACAGGTTCGAACGCGTGTGCATT
GCAGCTCAGGATTTCCACGGCGGTGATGAGTCGAGAAACTTTCGACTTGA
GCTGCACCGGTGGTACAAGAACGGGAGGACAAGGGCGTTGGGGTTTATGC
AGACGTCGGTCCAGAAGCTGAAGAGTCTAGAGTCGAACAGCAGTATGTAC
TGGTGGCCGGCTGAAGACGGAATCAGTTGTGCAAAGATCATCGTTCTCCA
GGCGTTGACGTCGCCGTGCGAGGCCCATTTCAACTTGATGCTATCGGCGT
CGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_647:1383140..1384294-

>Gvermi13981.t1 ID=Gvermi13981.t1|Name=Gvermi13981.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1155bp|location=Sequence derived from alignment at ScGOVlb_647:1383140..1384294- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATTGACAGCTCCAACTCGGATTTTGGGGGCGGAGTAGGGAATGGAGA
ACTTGTTCAAACCCCCAGCACCGAAATTCTCGGAGGAACGATGGTGGAAT
CGGAAGGCGAAGACTTCGACGAAGCTGAAAAGGCGCCGCCAAGGTTACCT
TCCGCGTACCGGGCAAAGCCGTCAGTGATTGAGTTTTCACCCGTCTCAAA
CCAAGGTGCGGACGTGTTTGACACCGGTGAAGAAGAGAAAATTTTGGATC
CTTGCGGCTTGTCTCCGCGCGGGGTACTGAACAAGGGGGTGCCAGCTCTA
ATAGAGTCGTTGAGGTTTGATGCCCTGGAGCTGCATGTGGAAGGGTTTGA
AACGACGCGTTTGGAGTTGTTTGGGCCTGCGGAGTGCTTTGCGGTGTTGT
TCAGCGAAGGCTCTGTGCCAGGGACCTGGGAGCTGACGGACAGAAGCGAA
ACAGTGAGGTGCGCACAACACATCCGGCTGCTCAAGAAGTTTCGGCTGCG
AGCGGCCACCGAGGTGGACCGGTCGGAGAAAATCATGCTTGCGTTCTTCG
ACGCAAACACACCGGCGCACCTGCTGGAGCCGGCGAACGCCCTCGGGCAC
GGCACATTTTCAGCGGCGGAGCTCATCGAGTCCAAGGAGCTCGCTGTGGA
GCGGCAGCTGCGGAAAGAGGGGTGGAGCTTTTGGGGCGACGCGCACGTTG
TTTTGTCGCTCGACTTTCTCAAGCACGTGTCGCTGAAGGAGAACATCTGC
ATCGAGTTTGGGCTCGACGACGAGTCGCCGCGAATGAATCGCATGTTCTT
CATCATCTCGCGCAGCTTGCCGCAGGGGACGTGGTCGCCGATCTACAAGT
CAGAGGTGCGCATGCGCAACGAGGCGGACAGGTTCGAACGCGTGTGCATT
GCAGCTCAGGATTTCCACGGCGGTGATGAGTCGAGAAACTTTCGACTTGA
GCTGCACCGGTGGTACAAGAACGGGAGGACAAGGGCGTTGGGGTTTATGC
AGACGTCGGTCCAGAAGCTGAAGAGTCTAGAGTCGAACAGCAGTATGTAC
TGGTGGCCGGCTGAAGACGGAATCAGTTGTGCAAAGATCATCGTTCTCCA
GGCGTTGACGTCGCCGTGCGAGGCCCATTTCAACTTGATGCTATCGGCGT
CGTGA
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