Gvermi13972.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13972.t1
Unique NameGvermi13972.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length504
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:1359056..1360567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005651958.1
PFAMsATP-synt_ab,ATP-synt_ab_N
Max annot lvl3041|Chlorophyta
KEGG koko:K02147
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04145,ko04150,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map01100,map04145,map04150,map04721,map04966,map05110,map05120,map05323
KEGG ModuleM00160
Evalue2.54e-282
EggNOG OGsCOG1156@1|root,KOG1351@2759|Eukaryota,37JA1@33090|Viridiplantae,34H3M@3041|Chlorophyta
DescriptionVacuolar ATP synthase subunit B
COG categoryC
BRITEko00000,ko00001,ko00002,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13972Gvermi13972Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 1359056..1360567 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13972.t1.stop1Gvermi13972.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 1359056..1359058 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13972.t1.CDS1Gvermi13972.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 1359056..1360567 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13972.t1.exon1Gvermi13972.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 1359056..1360567 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13972.t1.start1Gvermi13972.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 1360565..1360567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13972.t1Gvermi13972.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 1359056..1360567 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13972.t1 ID=Gvermi13972.t1|Name=Gvermi13972.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=504bp
MAVDSVTSELEAFNINKEAAEHDFILKPRLDYRTVAAVNGPLVVLDNVKF
PRYAEIVTLTLGDGTKRRGQVLEVNGDKAVVQVFEGTTGIDNRNTHVEFS
GEIMKTPVSRDMLGRIFNGSGKPIDNGPPVIPEAYLDIAGSSINPQSRTY
PEEMIQTGISTIDLMNSIARGQKIPLFSAAGLPHNEVAAQICRQAGLVKR
SGEGDGEDEDFAIVFAAMGVNMEAARFFRQDFEENGAMGKVTLFLNLAND
PTIERIVTPRLALTAAEYLAYECGMHVLVILTDMSSYADALREVSAAREE
VPGRRGYPGYMYTDLATIYERAGRVEGRPGSITQLPILTMPNDDITHPIP
DLTGYITEGQIYLDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTREDHS
AVSNQMYAGYAIGKDVIAMKAVVGEEALTQDDLLYLEFHEKFEKKFVSQG
AYEIRSVFTSLDLAWELLRTFPQSMLKRIPGKILKKYYQRQGAETEETPA
IGQ*
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spliced messenger RNA

>Gvermi13972.t1 ID=Gvermi13972.t1|Name=Gvermi13972.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at ScGOVlb_647:1359056..1360567- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGTCGACTCCGTCACCTCCGAACTGGAGGCGTTCAATATCAACAA
GGAAGCAGCCGAGCACGACTTCATCCTCAAGCCGCGCCTCGACTACCGCA
CCGTCGCCGCCGTCAACGGCCCGCTTGTCGTATTGGACAACGTCAAATTC
CCGCGCTACGCCGAGATCGTCACCCTCACCCTGGGCGATGGCACCAAGCG
CCGCGGCCAGGTTCTCGAGGTCAACGGCGACAAGGCCGTCGTCCAGGTCT
TCGAGGGCACCACCGGCATTGACAATCGTAACACGCACGTCGAGTTCTCC
GGCGAAATCATGAAAACCCCCGTCTCTCGCGACATGCTCGGTCGCATTTT
CAACGGATCGGGAAAGCCCATCGACAACGGCCCGCCGGTCATTCCGGAGG
CCTACCTTGACATTGCCGGGTCTTCCATCAACCCCCAGTCCCGAACCTAT
CCTGAGGAAATGATCCAAACCGGGATTTCCACCATCGATCTCATGAACTC
CATCGCCCGTGGCCAGAAGATTCCGCTCTTCAGTGCCGCTGGTCTGCCTC
ACAACGAGGTCGCCGCTCAGATCTGTCGTCAGGCGGGCCTCGTCAAGCGC
TCCGGGGAAGGAGACGGCGAGGATGAGGATTTTGCCATTGTGTTTGCCGC
CATGGGTGTCAACATGGAAGCCGCCCGTTTCTTCCGACAGGATTTCGAGG
AGAACGGCGCCATGGGAAAGGTGACACTGTTCCTTAACCTTGCCAACGAT
CCCACCATTGAACGTATTGTTACCCCGCGTCTTGCACTCACGGCCGCCGA
ATACCTGGCGTATGAGTGTGGCATGCACGTGCTCGTCATTCTCACCGATA
TGAGCTCTTACGCCGATGCGCTGCGTGAGGTGTCTGCCGCGAGAGAAGAG
GTGCCCGGACGTCGTGGATACCCCGGTTACATGTACACCGATCTTGCAAC
CATCTATGAACGTGCCGGCCGTGTGGAAGGTCGCCCAGGTTCCATCACTC
AGCTTCCGATTCTCACTATGCCGAACGATGATATCACCCATCCCATTCCC
GATCTCACCGGTTACATTACTGAGGGTCAGATTTATCTGGACCGCCAACT
GCACAATCGCCAGATCTACCCGCCCATCAACGTGTTGCCGTCGCTATCAC
GTCTTATGAAATCGGCCATTGGCGAGGGTATGACGCGTGAGGATCACAGT
GCCGTGTCGAATCAGATGTATGCCGGATACGCCATTGGAAAGGATGTGAT
TGCCATGAAAGCGGTGGTTGGAGAGGAGGCGCTCACGCAAGATGATCTGC
TGTACCTCGAGTTCCATGAGAAGTTTGAGAAGAAGTTTGTGTCACAGGGC
GCCTATGAGATTCGCTCTGTGTTCACGTCACTCGACTTGGCCTGGGAACT
TTTGCGTACGTTCCCGCAGAGCATGTTGAAACGTATCCCGGGTAAAATTC
TGAAGAAGTATTATCAAAGACAGGGCGCTGAGACGGAGGAGACGCCGGCC
ATCGGGCAGTAG
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protein sequence of Gvermi13972.t1

>Gvermi13972.t1 ID=Gvermi13972.t1|Name=Gvermi13972.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=504bp
MAVDSVTSELEAFNINKEAAEHDFILKPRLDYRTVAAVNGPLVVLDNVKF
PRYAEIVTLTLGDGTKRRGQVLEVNGDKAVVQVFEGTTGIDNRNTHVEFS
GEIMKTPVSRDMLGRIFNGSGKPIDNGPPVIPEAYLDIAGSSINPQSRTY
PEEMIQTGISTIDLMNSIARGQKIPLFSAAGLPHNEVAAQICRQAGLVKR
SGEGDGEDEDFAIVFAAMGVNMEAARFFRQDFEENGAMGKVTLFLNLAND
PTIERIVTPRLALTAAEYLAYECGMHVLVILTDMSSYADALREVSAAREE
VPGRRGYPGYMYTDLATIYERAGRVEGRPGSITQLPILTMPNDDITHPIP
DLTGYITEGQIYLDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTREDHS
AVSNQMYAGYAIGKDVIAMKAVVGEEALTQDDLLYLEFHEKFEKKFVSQG
AYEIRSVFTSLDLAWELLRTFPQSMLKRIPGKILKKYYQRQGAETEETPA
IGQ*
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mRNA from alignment at ScGOVlb_647:1359056..1360567-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13972.t1 ID=Gvermi13972.t1|Name=Gvermi13972.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at ScGOVlb_647:1359056..1360567- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGTCGACTCCGTCACCTCCGAACTGGAGGCGTTCAATATCAACAA
GGAAGCAGCCGAGCACGACTTCATCCTCAAGCCGCGCCTCGACTACCGCA
CCGTCGCCGCCGTCAACGGCCCGCTTGTCGTATTGGACAACGTCAAATTC
CCGCGCTACGCCGAGATCGTCACCCTCACCCTGGGCGATGGCACCAAGCG
CCGCGGCCAGGTTCTCGAGGTCAACGGCGACAAGGCCGTCGTCCAGGTCT
TCGAGGGCACCACCGGCATTGACAATCGTAACACGCACGTCGAGTTCTCC
GGCGAAATCATGAAAACCCCCGTCTCTCGCGACATGCTCGGTCGCATTTT
CAACGGATCGGGAAAGCCCATCGACAACGGCCCGCCGGTCATTCCGGAGG
CCTACCTTGACATTGCCGGGTCTTCCATCAACCCCCAGTCCCGAACCTAT
CCTGAGGAAATGATCCAAACCGGGATTTCCACCATCGATCTCATGAACTC
CATCGCCCGTGGCCAGAAGATTCCGCTCTTCAGTGCCGCTGGTCTGCCTC
ACAACGAGGTCGCCGCTCAGATCTGTCGTCAGGCGGGCCTCGTCAAGCGC
TCCGGGGAAGGAGACGGCGAGGATGAGGATTTTGCCATTGTGTTTGCCGC
CATGGGTGTCAACATGGAAGCCGCCCGTTTCTTCCGACAGGATTTCGAGG
AGAACGGCGCCATGGGAAAGGTGACACTGTTCCTTAACCTTGCCAACGAT
CCCACCATTGAACGTATTGTTACCCCGCGTCTTGCACTCACGGCCGCCGA
ATACCTGGCGTATGAGTGTGGCATGCACGTGCTCGTCATTCTCACCGATA
TGAGCTCTTACGCCGATGCGCTGCGTGAGGTGTCTGCCGCGAGAGAAGAG
GTGCCCGGACGTCGTGGATACCCCGGTTACATGTACACCGATCTTGCAAC
CATCTATGAACGTGCCGGCCGTGTGGAAGGTCGCCCAGGTTCCATCACTC
AGCTTCCGATTCTCACTATGCCGAACGATGATATCACCCATCCCATTCCC
GATCTCACCGGTTACATTACTGAGGGTCAGATTTATCTGGACCGCCAACT
GCACAATCGCCAGATCTACCCGCCCATCAACGTGTTGCCGTCGCTATCAC
GTCTTATGAAATCGGCCATTGGCGAGGGTATGACGCGTGAGGATCACAGT
GCCGTGTCGAATCAGATGTATGCCGGATACGCCATTGGAAAGGATGTGAT
TGCCATGAAAGCGGTGGTTGGAGAGGAGGCGCTCACGCAAGATGATCTGC
TGTACCTCGAGTTCCATGAGAAGTTTGAGAAGAAGTTTGTGTCACAGGGC
GCCTATGAGATTCGCTCTGTGTTCACGTCACTCGACTTGGCCTGGGAACT
TTTGCGTACGTTCCCGCAGAGCATGTTGAAACGTATCCCGGGTAAAATTC
TGAAGAAGTATTATCAAAGACAGGGCGCTGAGACGGAGGAGACGCCGGCC
ATCGGGCAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_647:1359056..1360567-

>Gvermi13972.t1 ID=Gvermi13972.t1|Name=Gvermi13972.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1512bp|location=Sequence derived from alignment at ScGOVlb_647:1359056..1360567- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGTCGACTCCGTCACCTCCGAACTGGAGGCGTTCAATATCAACAA
GGAAGCAGCCGAGCACGACTTCATCCTCAAGCCGCGCCTCGACTACCGCA
CCGTCGCCGCCGTCAACGGCCCGCTTGTCGTATTGGACAACGTCAAATTC
CCGCGCTACGCCGAGATCGTCACCCTCACCCTGGGCGATGGCACCAAGCG
CCGCGGCCAGGTTCTCGAGGTCAACGGCGACAAGGCCGTCGTCCAGGTCT
TCGAGGGCACCACCGGCATTGACAATCGTAACACGCACGTCGAGTTCTCC
GGCGAAATCATGAAAACCCCCGTCTCTCGCGACATGCTCGGTCGCATTTT
CAACGGATCGGGAAAGCCCATCGACAACGGCCCGCCGGTCATTCCGGAGG
CCTACCTTGACATTGCCGGGTCTTCCATCAACCCCCAGTCCCGAACCTAT
CCTGAGGAAATGATCCAAACCGGGATTTCCACCATCGATCTCATGAACTC
CATCGCCCGTGGCCAGAAGATTCCGCTCTTCAGTGCCGCTGGTCTGCCTC
ACAACGAGGTCGCCGCTCAGATCTGTCGTCAGGCGGGCCTCGTCAAGCGC
TCCGGGGAAGGAGACGGCGAGGATGAGGATTTTGCCATTGTGTTTGCCGC
CATGGGTGTCAACATGGAAGCCGCCCGTTTCTTCCGACAGGATTTCGAGG
AGAACGGCGCCATGGGAAAGGTGACACTGTTCCTTAACCTTGCCAACGAT
CCCACCATTGAACGTATTGTTACCCCGCGTCTTGCACTCACGGCCGCCGA
ATACCTGGCGTATGAGTGTGGCATGCACGTGCTCGTCATTCTCACCGATA
TGAGCTCTTACGCCGATGCGCTGCGTGAGGTGTCTGCCGCGAGAGAAGAG
GTGCCCGGACGTCGTGGATACCCCGGTTACATGTACACCGATCTTGCAAC
CATCTATGAACGTGCCGGCCGTGTGGAAGGTCGCCCAGGTTCCATCACTC
AGCTTCCGATTCTCACTATGCCGAACGATGATATCACCCATCCCATTCCC
GATCTCACCGGTTACATTACTGAGGGTCAGATTTATCTGGACCGCCAACT
GCACAATCGCCAGATCTACCCGCCCATCAACGTGTTGCCGTCGCTATCAC
GTCTTATGAAATCGGCCATTGGCGAGGGTATGACGCGTGAGGATCACAGT
GCCGTGTCGAATCAGATGTATGCCGGATACGCCATTGGAAAGGATGTGAT
TGCCATGAAAGCGGTGGTTGGAGAGGAGGCGCTCACGCAAGATGATCTGC
TGTACCTCGAGTTCCATGAGAAGTTTGAGAAGAAGTTTGTGTCACAGGGC
GCCTATGAGATTCGCTCTGTGTTCACGTCACTCGACTTGGCCTGGGAACT
TTTGCGTACGTTCCCGCAGAGCATGTTGAAACGTATCCCGGGTAAAATTC
TGAAGAAGTATTATCAAAGACAGGGCGCTGAGACGGAGGAGACGCCGGCC
ATCGGGCAGTAG
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