Gvermi13949.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13949.t1
Unique NameGvermi13949.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length748
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:1063732..1065975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705621.1
PFAMsMeth_synt_1,Meth_synt_2
Max annot lvl2759|Eukaryota
KEGG rclassRC00035,RC00113,RC01241
KEGG koko:K00549
KEGG ReactionR04405,R09365
KEGG Pathwayko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230
KEGG ModuleM00017
Evalue2.85e-301
EggNOG OGsCOG0620@1|root,KOG2263@2759|Eukaryota
EC2.1.1.14
Description5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity
COG categoryE
BiGG ReactioniRC1080.CRv4_Au5_s3_g10761_t1
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13949Gvermi13949Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 1063732..1065975 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13949.t1.stop1Gvermi13949.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 1063732..1063734 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13949.t1.CDS1Gvermi13949.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 1063732..1065975 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13949.t1.exon1Gvermi13949.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 1063732..1065975 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13949.t1.start1Gvermi13949.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 1065973..1065975 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13949.t1Gvermi13949.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 1063732..1065975 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13949.t1 ID=Gvermi13949.t1|Name=Gvermi13949.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=748bp
MKQGSAYATATLGYPRIGRNREMKKAVENYWAGVVSDAALDAISDSVLAD
ALDTQRAAGIHSVAVGDHTLYDHVLDWTERLGCAPPRFRHLPPGRPAYFA
MARGVDDAPALDMSKFFGTNYHYLVPELHADTTPSPNFDAFLRQIHFAQQ
QIGAEHVVPVVLGPVTYVHIARLVDVEPRDMLDKLLPLYVQLLRLLAERK
VTEVQIHEPALVLSEAPSLRPLYETAFAALASCSLPLNLVTFFDDIHVDV
FPWVAKLPGLAAISLDFTRGDNLATLKQCGFPSALRLGAGVIDGRSVWAD
DASAPALLAAISAVVADDVSIVVQPSCSLQFVPIDVDAEAALPEHLRSRL
SFAVQKLNTTCKVAAAAAAPSATPPDMGQAIEHSVAAAVEESLFTRSPAF
EERRPHQFTVPGGFGTTTIGSFSQTPELRRLHTRHRKGLISDEEYNARVD
KEMAYVIGIQEALGLDVLVHGEPERTDMVEYFGVKLSGFTFTTHGWVQSY
GNRYVRPPIIYGDVSRTAPMTVREFKSAQAMTAKPVKGMLTGATTILNWS
FPRKDISREQQAYQIALALREEVLDLERAGCSIIQVDDPALREGLPLKRE
HWDDYLRWAVRSFRLSTSGVRAATQIVTHLCYSDFEDILEAIDGMDADVL
TIENSRSGDDMLRALASFGYARDIGPGVYDIHSPVVPKTETMAARIKLFR
ECGLRSERVWVNPDCGLKTRKWKEVLPSLANMVEAAKLARAESAAAQ*
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spliced messenger RNA

>Gvermi13949.t1 ID=Gvermi13949.t1|Name=Gvermi13949.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2244bp|location=Sequence derived from alignment at ScGOVlb_647:1063732..1065975- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCAAGGCTCCGCGTACGCTACAGCCACCCTCGGCTACCCGCGCAT
CGGCCGCAACCGCGAGATGAAGAAGGCCGTCGAGAACTACTGGGCCGGCG
TCGTGTCCGACGCCGCCCTGGACGCCATCTCCGACTCGGTCTTGGCCGAC
GCCCTCGACACGCAGCGCGCCGCCGGCATCCACTCCGTCGCCGTCGGCGA
CCACACCCTGTACGACCACGTCCTCGACTGGACCGAGCGCCTGGGCTGCG
CCCCGCCGCGCTTCCGCCATCTGCCCCCGGGCCGCCCGGCCTACTTTGCC
ATGGCGCGCGGCGTCGACGACGCCCCGGCCCTCGACATGTCCAAGTTCTT
TGGCACCAACTACCACTACCTCGTCCCGGAGCTGCACGCCGACACCACCC
CGTCCCCCAACTTTGACGCCTTCCTGCGCCAGATCCACTTTGCCCAGCAG
CAGATCGGCGCCGAGCACGTCGTCCCGGTCGTCCTGGGCCCCGTCACCTA
CGTCCACATTGCCCGCCTCGTCGATGTTGAGCCGCGGGACATGCTCGACA
AGCTGTTGCCGCTGTACGTCCAGTTACTGCGCCTTCTCGCCGAGCGCAAA
GTCACCGAGGTCCAGATCCATGAACCGGCCCTCGTCCTCTCCGAAGCCCC
GTCGCTGCGCCCGCTGTACGAGACCGCCTTTGCCGCCCTCGCGTCGTGCA
GCCTCCCGCTCAACCTCGTCACCTTCTTCGACGACATCCACGTCGACGTC
TTCCCGTGGGTCGCCAAGCTCCCGGGGCTGGCTGCCATCTCCCTCGACTT
CACGCGCGGCGACAACCTCGCCACGCTCAAGCAGTGCGGCTTCCCCTCCG
CCCTTCGCCTGGGCGCGGGCGTCATTGACGGCCGATCCGTGTGGGCGGAC
GACGCCTCCGCCCCGGCCCTGCTCGCCGCCATCAGCGCCGTCGTCGCCGA
CGACGTCTCCATCGTCGTGCAGCCCAGCTGCTCGCTGCAGTTTGTCCCCA
TCGACGTGGACGCCGAGGCGGCACTGCCGGAGCACCTTCGCTCCCGCCTC
AGCTTTGCCGTGCAGAAGCTCAACACCACGTGCAAAGTGGCCGCCGCCGC
CGCCGCGCCCTCTGCCACGCCGCCGGACATGGGGCAGGCCATCGAGCACT
CCGTCGCGGCCGCGGTCGAGGAGAGTCTCTTCACGCGCTCCCCCGCGTTC
GAAGAGCGCCGTCCGCACCAGTTCACCGTCCCCGGCGGCTTTGGCACCAC
CACGATCGGCTCGTTCTCGCAGACGCCCGAGCTGCGCCGCCTGCACACGA
GGCACCGCAAGGGGCTCATCAGTGACGAGGAGTACAACGCTCGCGTGGAC
AAGGAGATGGCGTACGTGATCGGCATCCAGGAGGCGCTCGGGCTGGACGT
GCTCGTGCACGGCGAGCCGGAACGCACCGACATGGTCGAGTACTTTGGCG
TCAAGCTGTCCGGCTTCACCTTCACCACGCACGGCTGGGTGCAGAGCTAC
GGCAACCGCTACGTGCGCCCGCCCATCATTTACGGCGACGTGTCGCGCAC
GGCGCCCATGACCGTGCGCGAGTTCAAGAGCGCGCAGGCCATGACGGCCA
AGCCCGTCAAGGGCATGCTCACCGGCGCCACTACCATCCTCAACTGGTCG
TTCCCGCGCAAGGACATCTCGCGCGAGCAGCAGGCGTACCAAATCGCTCT
GGCGCTGCGCGAGGAGGTGCTGGACCTCGAGCGCGCCGGCTGCTCCATCA
TCCAGGTGGACGACCCCGCGCTGCGCGAGGGGCTGCCGCTCAAGCGCGAG
CACTGGGACGACTACCTGCGCTGGGCCGTGCGCTCGTTCCGCCTCAGCAC
GTCGGGCGTGCGCGCCGCCACGCAGATCGTGACGCACCTGTGCTACTCGG
ACTTTGAGGACATCCTCGAAGCGATCGACGGCATGGACGCGGACGTGCTC
ACGATCGAAAACTCGCGCTCGGGCGACGACATGCTGCGCGCGCTGGCCAG
CTTCGGCTACGCGCGCGACATCGGCCCCGGCGTGTACGACATCCACTCGC
CGGTGGTGCCCAAGACCGAGACGATGGCGGCGCGCATCAAGCTCTTCAGA
GAGTGCGGGCTGCGCAGCGAGCGCGTCTGGGTCAACCCCGACTGCGGGCT
CAAGACGCGCAAGTGGAAGGAGGTGCTCCCGTCGCTCGCCAACATGGTGG
AGGCGGCGAAGCTCGCGCGCGCGGAAAGCGCCGCCGCGCAGTAG
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protein sequence of Gvermi13949.t1

>Gvermi13949.t1 ID=Gvermi13949.t1|Name=Gvermi13949.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=748bp
MKQGSAYATATLGYPRIGRNREMKKAVENYWAGVVSDAALDAISDSVLAD
ALDTQRAAGIHSVAVGDHTLYDHVLDWTERLGCAPPRFRHLPPGRPAYFA
MARGVDDAPALDMSKFFGTNYHYLVPELHADTTPSPNFDAFLRQIHFAQQ
QIGAEHVVPVVLGPVTYVHIARLVDVEPRDMLDKLLPLYVQLLRLLAERK
VTEVQIHEPALVLSEAPSLRPLYETAFAALASCSLPLNLVTFFDDIHVDV
FPWVAKLPGLAAISLDFTRGDNLATLKQCGFPSALRLGAGVIDGRSVWAD
DASAPALLAAISAVVADDVSIVVQPSCSLQFVPIDVDAEAALPEHLRSRL
SFAVQKLNTTCKVAAAAAAPSATPPDMGQAIEHSVAAAVEESLFTRSPAF
EERRPHQFTVPGGFGTTTIGSFSQTPELRRLHTRHRKGLISDEEYNARVD
KEMAYVIGIQEALGLDVLVHGEPERTDMVEYFGVKLSGFTFTTHGWVQSY
GNRYVRPPIIYGDVSRTAPMTVREFKSAQAMTAKPVKGMLTGATTILNWS
FPRKDISREQQAYQIALALREEVLDLERAGCSIIQVDDPALREGLPLKRE
HWDDYLRWAVRSFRLSTSGVRAATQIVTHLCYSDFEDILEAIDGMDADVL
TIENSRSGDDMLRALASFGYARDIGPGVYDIHSPVVPKTETMAARIKLFR
ECGLRSERVWVNPDCGLKTRKWKEVLPSLANMVEAAKLARAESAAAQ*
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mRNA from alignment at ScGOVlb_647:1063732..1065975-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13949.t1 ID=Gvermi13949.t1|Name=Gvermi13949.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2244bp|location=Sequence derived from alignment at ScGOVlb_647:1063732..1065975- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGCAAGGCTCCGCGTACGCTACAGCCACCCTCGGCTACCCGCGCAT
CGGCCGCAACCGCGAGATGAAGAAGGCCGTCGAGAACTACTGGGCCGGCG
TCGTGTCCGACGCCGCCCTGGACGCCATCTCCGACTCGGTCTTGGCCGAC
GCCCTCGACACGCAGCGCGCCGCCGGCATCCACTCCGTCGCCGTCGGCGA
CCACACCCTGTACGACCACGTCCTCGACTGGACCGAGCGCCTGGGCTGCG
CCCCGCCGCGCTTCCGCCATCTGCCCCCGGGCCGCCCGGCCTACTTTGCC
ATGGCGCGCGGCGTCGACGACGCCCCGGCCCTCGACATGTCCAAGTTCTT
TGGCACCAACTACCACTACCTCGTCCCGGAGCTGCACGCCGACACCACCC
CGTCCCCCAACTTTGACGCCTTCCTGCGCCAGATCCACTTTGCCCAGCAG
CAGATCGGCGCCGAGCACGTCGTCCCGGTCGTCCTGGGCCCCGTCACCTA
CGTCCACATTGCCCGCCTCGTCGATGTTGAGCCGCGGGACATGCTCGACA
AGCTGTTGCCGCTGTACGTCCAGTTACTGCGCCTTCTCGCCGAGCGCAAA
GTCACCGAGGTCCAGATCCATGAACCGGCCCTCGTCCTCTCCGAAGCCCC
GTCGCTGCGCCCGCTGTACGAGACCGCCTTTGCCGCCCTCGCGTCGTGCA
GCCTCCCGCTCAACCTCGTCACCTTCTTCGACGACATCCACGTCGACGTC
TTCCCGTGGGTCGCCAAGCTCCCGGGGCTGGCTGCCATCTCCCTCGACTT
CACGCGCGGCGACAACCTCGCCACGCTCAAGCAGTGCGGCTTCCCCTCCG
CCCTTCGCCTGGGCGCGGGCGTCATTGACGGCCGATCCGTGTGGGCGGAC
GACGCCTCCGCCCCGGCCCTGCTCGCCGCCATCAGCGCCGTCGTCGCCGA
CGACGTCTCCATCGTCGTGCAGCCCAGCTGCTCGCTGCAGTTTGTCCCCA
TCGACGTGGACGCCGAGGCGGCACTGCCGGAGCACCTTCGCTCCCGCCTC
AGCTTTGCCGTGCAGAAGCTCAACACCACGTGCAAAGTGGCCGCCGCCGC
CGCCGCGCCCTCTGCCACGCCGCCGGACATGGGGCAGGCCATCGAGCACT
CCGTCGCGGCCGCGGTCGAGGAGAGTCTCTTCACGCGCTCCCCCGCGTTC
GAAGAGCGCCGTCCGCACCAGTTCACCGTCCCCGGCGGCTTTGGCACCAC
CACGATCGGCTCGTTCTCGCAGACGCCCGAGCTGCGCCGCCTGCACACGA
GGCACCGCAAGGGGCTCATCAGTGACGAGGAGTACAACGCTCGCGTGGAC
AAGGAGATGGCGTACGTGATCGGCATCCAGGAGGCGCTCGGGCTGGACGT
GCTCGTGCACGGCGAGCCGGAACGCACCGACATGGTCGAGTACTTTGGCG
TCAAGCTGTCCGGCTTCACCTTCACCACGCACGGCTGGGTGCAGAGCTAC
GGCAACCGCTACGTGCGCCCGCCCATCATTTACGGCGACGTGTCGCGCAC
GGCGCCCATGACCGTGCGCGAGTTCAAGAGCGCGCAGGCCATGACGGCCA
AGCCCGTCAAGGGCATGCTCACCGGCGCCACTACCATCCTCAACTGGTCG
TTCCCGCGCAAGGACATCTCGCGCGAGCAGCAGGCGTACCAAATCGCTCT
GGCGCTGCGCGAGGAGGTGCTGGACCTCGAGCGCGCCGGCTGCTCCATCA
TCCAGGTGGACGACCCCGCGCTGCGCGAGGGGCTGCCGCTCAAGCGCGAG
CACTGGGACGACTACCTGCGCTGGGCCGTGCGCTCGTTCCGCCTCAGCAC
GTCGGGCGTGCGCGCCGCCACGCAGATCGTGACGCACCTGTGCTACTCGG
ACTTTGAGGACATCCTCGAAGCGATCGACGGCATGGACGCGGACGTGCTC
ACGATCGAAAACTCGCGCTCGGGCGACGACATGCTGCGCGCGCTGGCCAG
CTTCGGCTACGCGCGCGACATCGGCCCCGGCGTGTACGACATCCACTCGC
CGGTGGTGCCCAAGACCGAGACGATGGCGGCGCGCATCAAGCTCTTCAGA
GAGTGCGGGCTGCGCAGCGAGCGCGTCTGGGTCAACCCCGACTGCGGGCT
CAAGACGCGCAAGTGGAAGGAGGTGCTCCCGTCGCTCGCCAACATGGTGG
AGGCGGCGAAGCTCGCGCGCGCGGAAAGCGCCGCCGCGCAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_647:1063732..1065975-

>Gvermi13949.t1 ID=Gvermi13949.t1|Name=Gvermi13949.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2244bp|location=Sequence derived from alignment at ScGOVlb_647:1063732..1065975- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGCAAGGCTCCGCGTACGCTACAGCCACCCTCGGCTACCCGCGCAT
CGGCCGCAACCGCGAGATGAAGAAGGCCGTCGAGAACTACTGGGCCGGCG
TCGTGTCCGACGCCGCCCTGGACGCCATCTCCGACTCGGTCTTGGCCGAC
GCCCTCGACACGCAGCGCGCCGCCGGCATCCACTCCGTCGCCGTCGGCGA
CCACACCCTGTACGACCACGTCCTCGACTGGACCGAGCGCCTGGGCTGCG
CCCCGCCGCGCTTCCGCCATCTGCCCCCGGGCCGCCCGGCCTACTTTGCC
ATGGCGCGCGGCGTCGACGACGCCCCGGCCCTCGACATGTCCAAGTTCTT
TGGCACCAACTACCACTACCTCGTCCCGGAGCTGCACGCCGACACCACCC
CGTCCCCCAACTTTGACGCCTTCCTGCGCCAGATCCACTTTGCCCAGCAG
CAGATCGGCGCCGAGCACGTCGTCCCGGTCGTCCTGGGCCCCGTCACCTA
CGTCCACATTGCCCGCCTCGTCGATGTTGAGCCGCGGGACATGCTCGACA
AGCTGTTGCCGCTGTACGTCCAGTTACTGCGCCTTCTCGCCGAGCGCAAA
GTCACCGAGGTCCAGATCCATGAACCGGCCCTCGTCCTCTCCGAAGCCCC
GTCGCTGCGCCCGCTGTACGAGACCGCCTTTGCCGCCCTCGCGTCGTGCA
GCCTCCCGCTCAACCTCGTCACCTTCTTCGACGACATCCACGTCGACGTC
TTCCCGTGGGTCGCCAAGCTCCCGGGGCTGGCTGCCATCTCCCTCGACTT
CACGCGCGGCGACAACCTCGCCACGCTCAAGCAGTGCGGCTTCCCCTCCG
CCCTTCGCCTGGGCGCGGGCGTCATTGACGGCCGATCCGTGTGGGCGGAC
GACGCCTCCGCCCCGGCCCTGCTCGCCGCCATCAGCGCCGTCGTCGCCGA
CGACGTCTCCATCGTCGTGCAGCCCAGCTGCTCGCTGCAGTTTGTCCCCA
TCGACGTGGACGCCGAGGCGGCACTGCCGGAGCACCTTCGCTCCCGCCTC
AGCTTTGCCGTGCAGAAGCTCAACACCACGTGCAAAGTGGCCGCCGCCGC
CGCCGCGCCCTCTGCCACGCCGCCGGACATGGGGCAGGCCATCGAGCACT
CCGTCGCGGCCGCGGTCGAGGAGAGTCTCTTCACGCGCTCCCCCGCGTTC
GAAGAGCGCCGTCCGCACCAGTTCACCGTCCCCGGCGGCTTTGGCACCAC
CACGATCGGCTCGTTCTCGCAGACGCCCGAGCTGCGCCGCCTGCACACGA
GGCACCGCAAGGGGCTCATCAGTGACGAGGAGTACAACGCTCGCGTGGAC
AAGGAGATGGCGTACGTGATCGGCATCCAGGAGGCGCTCGGGCTGGACGT
GCTCGTGCACGGCGAGCCGGAACGCACCGACATGGTCGAGTACTTTGGCG
TCAAGCTGTCCGGCTTCACCTTCACCACGCACGGCTGGGTGCAGAGCTAC
GGCAACCGCTACGTGCGCCCGCCCATCATTTACGGCGACGTGTCGCGCAC
GGCGCCCATGACCGTGCGCGAGTTCAAGAGCGCGCAGGCCATGACGGCCA
AGCCCGTCAAGGGCATGCTCACCGGCGCCACTACCATCCTCAACTGGTCG
TTCCCGCGCAAGGACATCTCGCGCGAGCAGCAGGCGTACCAAATCGCTCT
GGCGCTGCGCGAGGAGGTGCTGGACCTCGAGCGCGCCGGCTGCTCCATCA
TCCAGGTGGACGACCCCGCGCTGCGCGAGGGGCTGCCGCTCAAGCGCGAG
CACTGGGACGACTACCTGCGCTGGGCCGTGCGCTCGTTCCGCCTCAGCAC
GTCGGGCGTGCGCGCCGCCACGCAGATCGTGACGCACCTGTGCTACTCGG
ACTTTGAGGACATCCTCGAAGCGATCGACGGCATGGACGCGGACGTGCTC
ACGATCGAAAACTCGCGCTCGGGCGACGACATGCTGCGCGCGCTGGCCAG
CTTCGGCTACGCGCGCGACATCGGCCCCGGCGTGTACGACATCCACTCGC
CGGTGGTGCCCAAGACCGAGACGATGGCGGCGCGCATCAAGCTCTTCAGA
GAGTGCGGGCTGCGCAGCGAGCGCGTCTGGGTCAACCCCGACTGCGGGCT
CAAGACGCGCAAGTGGAAGGAGGTGCTCCCGTCGCTCGCCAACATGGTGG
AGGCGGCGAAGCTCGCGCGCGCGGAAAGCGCCGCCGCGCAGTAG
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