Gvermi13947.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13947.t1
Unique NameGvermi13947.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length199
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:1060056..1060652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704906.1
PFAMsDUF202
Max annot lvl2759|Eukaryota
Evalue1.28e-25
EggNOG OGs2D6QC@1|root,2T2MT@2759|Eukaryota
DescriptionDomain of unknown function (DUF202)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13947Gvermi13947Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 1060056..1060652 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13947.t1.stop1Gvermi13947.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 1060056..1060058 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13947.t1.CDS1Gvermi13947.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 1060056..1060652 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13947.t1.exon1Gvermi13947.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 1060056..1060652 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13947.t1.start1Gvermi13947.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 1060650..1060652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13947.t1Gvermi13947.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 1060056..1060652 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13947.t1 ID=Gvermi13947.t1|Name=Gvermi13947.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=199bp
MNGNASAESPEMVALASDADDEITPLTGVRVDGGQRGDSGAPGGAQYGAV
QKGKKKKDKEKSPQKQVADLLKTDMAAERTFFKWLWTGLHTGAIGSFIFV
TFDVDKRDPLRVVVVGFSWLVALLLVLYGTFAYYRRRHALRTGNIEHVPS
FTREHSPLVVVTALLLVVGVTMTYALLHEGQHAAADDSTPAAAPHFGQ*
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spliced messenger RNA

>Gvermi13947.t1 ID=Gvermi13947.t1|Name=Gvermi13947.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=597bp|location=Sequence derived from alignment at ScGOVlb_647:1060056..1060652- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGGCAACGCGTCCGCGGAGTCGCCGGAGATGGTGGCGCTGGCGTC
CGACGCGGACGACGAGATCACGCCGCTGACCGGCGTGCGCGTGGACGGCG
GCCAGCGCGGCGACAGCGGCGCGCCGGGCGGCGCGCAGTACGGCGCCGTG
CAGAAGGGGAAGAAGAAGAAGGACAAGGAAAAGTCGCCGCAGAAGCAGGT
GGCGGACCTGCTCAAGACGGACATGGCGGCGGAGCGCACGTTCTTCAAGT
GGCTGTGGACCGGGCTGCACACGGGCGCCATCGGCTCGTTCATCTTCGTG
ACGTTTGACGTGGACAAGCGCGACCCGCTGCGGGTGGTGGTCGTGGGCTT
TTCGTGGCTCGTTGCGCTTCTTCTCGTGCTGTACGGCACGTTTGCGTACT
ACCGGCGGCGCCACGCGCTGCGCACCGGAAACATTGAGCATGTGCCGTCG
TTCACCAGGGAGCACAGCCCGCTTGTGGTTGTCACTGCGCTGCTCCTTGT
GGTGGGTGTGACGATGACGTACGCGCTACTGCACGAGGGGCAGCACGCAG
CTGCGGACGATTCCACACCGGCAGCGGCACCGCACTTTGGTCAATAG
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protein sequence of Gvermi13947.t1

>Gvermi13947.t1 ID=Gvermi13947.t1|Name=Gvermi13947.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=199bp
MNGNASAESPEMVALASDADDEITPLTGVRVDGGQRGDSGAPGGAQYGAV
QKGKKKKDKEKSPQKQVADLLKTDMAAERTFFKWLWTGLHTGAIGSFIFV
TFDVDKRDPLRVVVVGFSWLVALLLVLYGTFAYYRRRHALRTGNIEHVPS
FTREHSPLVVVTALLLVVGVTMTYALLHEGQHAAADDSTPAAAPHFGQ*
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mRNA from alignment at ScGOVlb_647:1060056..1060652-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13947.t1 ID=Gvermi13947.t1|Name=Gvermi13947.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=597bp|location=Sequence derived from alignment at ScGOVlb_647:1060056..1060652- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATGGCAACGCGTCCGCGGAGTCGCCGGAGATGGTGGCGCTGGCGTC
CGACGCGGACGACGAGATCACGCCGCTGACCGGCGTGCGCGTGGACGGCG
GCCAGCGCGGCGACAGCGGCGCGCCGGGCGGCGCGCAGTACGGCGCCGTG
CAGAAGGGGAAGAAGAAGAAGGACAAGGAAAAGTCGCCGCAGAAGCAGGT
GGCGGACCTGCTCAAGACGGACATGGCGGCGGAGCGCACGTTCTTCAAGT
GGCTGTGGACCGGGCTGCACACGGGCGCCATCGGCTCGTTCATCTTCGTG
ACGTTTGACGTGGACAAGCGCGACCCGCTGCGGGTGGTGGTCGTGGGCTT
TTCGTGGCTCGTTGCGCTTCTTCTCGTGCTGTACGGCACGTTTGCGTACT
ACCGGCGGCGCCACGCGCTGCGCACCGGAAACATTGAGCATGTGCCGTCG
TTCACCAGGGAGCACAGCCCGCTTGTGGTTGTCACTGCGCTGCTCCTTGT
GGTGGGTGTGACGATGACGTACGCGCTACTGCACGAGGGGCAGCACGCAG
CTGCGGACGATTCCACACCGGCAGCGGCACCGCACTTTGGTCAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_647:1060056..1060652-

>Gvermi13947.t1 ID=Gvermi13947.t1|Name=Gvermi13947.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=597bp|location=Sequence derived from alignment at ScGOVlb_647:1060056..1060652- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATGGCAACGCGTCCGCGGAGTCGCCGGAGATGGTGGCGCTGGCGTC
CGACGCGGACGACGAGATCACGCCGCTGACCGGCGTGCGCGTGGACGGCG
GCCAGCGCGGCGACAGCGGCGCGCCGGGCGGCGCGCAGTACGGCGCCGTG
CAGAAGGGGAAGAAGAAGAAGGACAAGGAAAAGTCGCCGCAGAAGCAGGT
GGCGGACCTGCTCAAGACGGACATGGCGGCGGAGCGCACGTTCTTCAAGT
GGCTGTGGACCGGGCTGCACACGGGCGCCATCGGCTCGTTCATCTTCGTG
ACGTTTGACGTGGACAAGCGCGACCCGCTGCGGGTGGTGGTCGTGGGCTT
TTCGTGGCTCGTTGCGCTTCTTCTCGTGCTGTACGGCACGTTTGCGTACT
ACCGGCGGCGCCACGCGCTGCGCACCGGAAACATTGAGCATGTGCCGTCG
TTCACCAGGGAGCACAGCCCGCTTGTGGTTGTCACTGCGCTGCTCCTTGT
GGTGGGTGTGACGATGACGTACGCGCTACTGCACGAGGGGCAGCACGCAG
CTGCGGACGATTCCACACCGGCAGCGGCACCGCACTTTGGTCAATAG
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