Gvermi13944.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13944.t1
Unique NameGvermi13944.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length297
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:1051816..1052706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13944Gvermi13944Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 1051816..1052706 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13944.t1.start1Gvermi13944.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 1051816..1051818 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13944.t1.CDS1Gvermi13944.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 1051816..1052706 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13944.t1.exon1Gvermi13944.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 1051816..1052706 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13944.t1.stop1Gvermi13944.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 1052704..1052706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13944.t1Gvermi13944.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 1051816..1052706 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13944.t1 ID=Gvermi13944.t1|Name=Gvermi13944.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=297bp
MHTPAIPSVIPPVITPVTPPVITPVTPPAVPVDPMSALIVPRRCYTREKL
LSLRHSRQLPPHVTRIRCAAFVITTSTAPANPPTRRPSPPPSPPPGFGHI
QLPVQPSPPRSPSPPPEDRARIRIARAPYMPDNFATRIAFHSRPAPFAPP
LTSQEIDALFDTSSSSPFDTFSERLVVANAPANGSARFTHFREIEPRNPP
VPSAHVVEPSKAPRPLDDQLDDSVLAFFETVRARARSEDPEDSRVMHDTL
PRDSQSVPNTLTNAHKIAPAQLNQVTSSDVVDLQNWFARLAQQTMQ*
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spliced messenger RNA

>Gvermi13944.t1 ID=Gvermi13944.t1|Name=Gvermi13944.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=891bp|location=Sequence derived from alignment at ScGOVlb_647:1051816..1052706+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATACTCCCGCCATCCCTTCCGTCATCCCTCCCGTCATTACTCCCGT
TACTCCTCCCGTCATTACTCCTGTTACTCCTCCCGCCGTTCCTGTCGATC
CCATGTCCGCCCTCATCGTACCGCGTCGCTGCTACACCCGTGAAAAGCTT
CTCTCCCTCCGTCACAGCCGCCAGCTACCTCCCCATGTGACGCGCATACG
CTGCGCAGCCTTTGTCATCACCACATCAACCGCCCCCGCAAACCCGCCGA
CCCGACGGCCGTCCCCGCCACCGTCCCCGCCGCCCGGCTTTGGCCACATT
CAACTTCCGGTGCAACCTTCCCCGCCTCGTTCTCCATCGCCCCCGCCCGA
AGATCGAGCCCGCATCCGCATCGCGCGCGCCCCGTACATGCCGGACAACT
TTGCCACCCGAATCGCATTTCACTCGCGACCTGCCCCGTTTGCCCCGCCG
CTTACTTCGCAAGAAATCGACGCCTTGTTCGACACCTCATCTTCGTCCCC
GTTCGACACCTTTTCAGAGCGCCTTGTCGTCGCGAATGCCCCTGCGAACG
GCAGTGCCAGATTCACTCACTTCCGTGAGATAGAGCCACGCAATCCCCCT
GTCCCTTCGGCACACGTTGTGGAACCCTCAAAAGCGCCAAGGCCTCTGGA
CGATCAACTTGACGACTCCGTGCTGGCCTTCTTCGAAACCGTACGCGCAC
GTGCTCGCAGCGAGGATCCTGAGGACTCCCGCGTAATGCACGACACGCTC
CCACGTGATTCGCAATCCGTCCCAAATACATTGACGAATGCGCATAAGAT
TGCACCCGCGCAACTCAATCAAGTGACAAGCTCTGACGTCGTTGATCTAC
AAAATTGGTTTGCCCGTCTCGCGCAACAAACCATGCAATGA
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protein sequence of Gvermi13944.t1

>Gvermi13944.t1 ID=Gvermi13944.t1|Name=Gvermi13944.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=297bp
MHTPAIPSVIPPVITPVTPPVITPVTPPAVPVDPMSALIVPRRCYTREKL
LSLRHSRQLPPHVTRIRCAAFVITTSTAPANPPTRRPSPPPSPPPGFGHI
QLPVQPSPPRSPSPPPEDRARIRIARAPYMPDNFATRIAFHSRPAPFAPP
LTSQEIDALFDTSSSSPFDTFSERLVVANAPANGSARFTHFREIEPRNPP
VPSAHVVEPSKAPRPLDDQLDDSVLAFFETVRARARSEDPEDSRVMHDTL
PRDSQSVPNTLTNAHKIAPAQLNQVTSSDVVDLQNWFARLAQQTMQ*
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mRNA from alignment at ScGOVlb_647:1051816..1052706+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13944.t1 ID=Gvermi13944.t1|Name=Gvermi13944.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=891bp|location=Sequence derived from alignment at ScGOVlb_647:1051816..1052706+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATACTCCCGCCATCCCTTCCGTCATCCCTCCCGTCATTACTCCCGT
TACTCCTCCCGTCATTACTCCTGTTACTCCTCCCGCCGTTCCTGTCGATC
CCATGTCCGCCCTCATCGTACCGCGTCGCTGCTACACCCGTGAAAAGCTT
CTCTCCCTCCGTCACAGCCGCCAGCTACCTCCCCATGTGACGCGCATACG
CTGCGCAGCCTTTGTCATCACCACATCAACCGCCCCCGCAAACCCGCCGA
CCCGACGGCCGTCCCCGCCACCGTCCCCGCCGCCCGGCTTTGGCCACATT
CAACTTCCGGTGCAACCTTCCCCGCCTCGTTCTCCATCGCCCCCGCCCGA
AGATCGAGCCCGCATCCGCATCGCGCGCGCCCCGTACATGCCGGACAACT
TTGCCACCCGAATCGCATTTCACTCGCGACCTGCCCCGTTTGCCCCGCCG
CTTACTTCGCAAGAAATCGACGCCTTGTTCGACACCTCATCTTCGTCCCC
GTTCGACACCTTTTCAGAGCGCCTTGTCGTCGCGAATGCCCCTGCGAACG
GCAGTGCCAGATTCACTCACTTCCGTGAGATAGAGCCACGCAATCCCCCT
GTCCCTTCGGCACACGTTGTGGAACCCTCAAAAGCGCCAAGGCCTCTGGA
CGATCAACTTGACGACTCCGTGCTGGCCTTCTTCGAAACCGTACGCGCAC
GTGCTCGCAGCGAGGATCCTGAGGACTCCCGCGTAATGCACGACACGCTC
CCACGTGATTCGCAATCCGTCCCAAATACATTGACGAATGCGCATAAGAT
TGCACCCGCGCAACTCAATCAAGTGACAAGCTCTGACGTCGTTGATCTAC
AAAATTGGTTTGCCCGTCTCGCGCAACAAACCATGCAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_647:1051816..1052706+

>Gvermi13944.t1 ID=Gvermi13944.t1|Name=Gvermi13944.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=891bp|location=Sequence derived from alignment at ScGOVlb_647:1051816..1052706+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATACTCCCGCCATCCCTTCCGTCATCCCTCCCGTCATTACTCCCGT
TACTCCTCCCGTCATTACTCCTGTTACTCCTCCCGCCGTTCCTGTCGATC
CCATGTCCGCCCTCATCGTACCGCGTCGCTGCTACACCCGTGAAAAGCTT
CTCTCCCTCCGTCACAGCCGCCAGCTACCTCCCCATGTGACGCGCATACG
CTGCGCAGCCTTTGTCATCACCACATCAACCGCCCCCGCAAACCCGCCGA
CCCGACGGCCGTCCCCGCCACCGTCCCCGCCGCCCGGCTTTGGCCACATT
CAACTTCCGGTGCAACCTTCCCCGCCTCGTTCTCCATCGCCCCCGCCCGA
AGATCGAGCCCGCATCCGCATCGCGCGCGCCCCGTACATGCCGGACAACT
TTGCCACCCGAATCGCATTTCACTCGCGACCTGCCCCGTTTGCCCCGCCG
CTTACTTCGCAAGAAATCGACGCCTTGTTCGACACCTCATCTTCGTCCCC
GTTCGACACCTTTTCAGAGCGCCTTGTCGTCGCGAATGCCCCTGCGAACG
GCAGTGCCAGATTCACTCACTTCCGTGAGATAGAGCCACGCAATCCCCCT
GTCCCTTCGGCACACGTTGTGGAACCCTCAAAAGCGCCAAGGCCTCTGGA
CGATCAACTTGACGACTCCGTGCTGGCCTTCTTCGAAACCGTACGCGCAC
GTGCTCGCAGCGAGGATCCTGAGGACTCCCGCGTAATGCACGACACGCTC
CCACGTGATTCGCAATCCGTCCCAAATACATTGACGAATGCGCATAAGAT
TGCACCCGCGCAACTCAATCAAGTGACAAGCTCTGACGTCGTTGATCTAC
AAAATTGGTTTGCCCGTCTCGCGCAACAAACCATGCAATGA
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