Gvermi13939.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13939.t1
Unique NameGvermi13939.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length289
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:1043696..1044562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13939Gvermi13939Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 1043696..1044562 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13939.t1.stop1Gvermi13939.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 1043696..1043698 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13939.t1.CDS1Gvermi13939.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 1043696..1044562 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13939.t1.exon1Gvermi13939.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 1043696..1044562 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13939.t1.start1Gvermi13939.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 1044560..1044562 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13939.t1Gvermi13939.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 1043696..1044562 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13939.t1 ID=Gvermi13939.t1|Name=Gvermi13939.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=289bp
MSITGFEKQKDVIPDVRATQISGSVDENNYMSLDVAQLTQVGQNTGMSVT
ERTTKILLHLKIAVISKPDTGTIALRDVSGECGSCWNIESWRANIRGCKF
VLVQTWDGGSELQAYCTSVSGLRFAVKMVTEHRMSLSANSFEREHLRKFN
DWSCASAIVLKCVLNRSLQATGDYASWYKELFRSDRHLFEDARDNAFNIN
APLMIDVNTCILIEEKAISVVYDSDKAVRFSCLCRTGLNGSQQPLLLINF
SGKRTAAPAVNIMQINKNGNISTSAKKYGGTTSVFFLG*
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spliced messenger RNA

>Gvermi13939.t1 ID=Gvermi13939.t1|Name=Gvermi13939.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=867bp|location=Sequence derived from alignment at ScGOVlb_647:1043696..1044562- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAATTACTGGCTTCGAAAAGCAAAAGGACGTGATTCCAGACGTAAG
GGCCACCCAAATAAGCGGAAGTGTAGATGAGAATAATTATATGTCTTTGG
ATGTTGCACAACTCACCCAAGTTGGGCAAAATACTGGCATGTCAGTCACA
GAGAGGACCACGAAGATTCTTCTTCACTTGAAGATAGCCGTGATATCCAA
GCCTGACACAGGTACCATAGCTCTGCGAGATGTTTCAGGTGAATGTGGAT
CCTGTTGGAATATCGAAAGTTGGAGAGCAAACATAAGGGGATGCAAGTTT
GTTCTTGTACAAACCTGGGACGGTGGAAGCGAGTTGCAAGCCTATTGCAC
GTCGGTTTCTGGGCTTAGATTTGCCGTTAAGATGGTGACAGAACACCGAA
TGTCACTGTCTGCGAACAGTTTTGAGCGCGAACATCTGAGAAAATTCAAT
GACTGGTCATGTGCATCAGCCATTGTGTTGAAATGCGTTCTGAACAGATC
TCTGCAAGCCACCGGGGATTATGCTTCTTGGTATAAAGAGCTTTTCCGCT
CTGATCGGCACTTGTTTGAGGACGCACGCGATAATGCGTTCAATATAAAT
GCGCCTCTAATGATTGACGTGAACACGTGCATCCTTATCGAAGAGAAGGC
TATATCTGTCGTCTATGACAGTGATAAAGCAGTTCGATTCTCTTGCCTCT
GTCGAACAGGCTTAAATGGCTCTCAACAGCCGCTGTTGTTGATAAACTTC
AGCGGGAAGCGCACTGCGGCACCTGCCGTAAATATCATGCAGATAAATAA
GAACGGAAATATCTCGACAAGCGCAAAGAAATATGGGGGAACCACATCGG
TTTTCTTTTTGGGTTGA
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protein sequence of Gvermi13939.t1

>Gvermi13939.t1 ID=Gvermi13939.t1|Name=Gvermi13939.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=289bp
MSITGFEKQKDVIPDVRATQISGSVDENNYMSLDVAQLTQVGQNTGMSVT
ERTTKILLHLKIAVISKPDTGTIALRDVSGECGSCWNIESWRANIRGCKF
VLVQTWDGGSELQAYCTSVSGLRFAVKMVTEHRMSLSANSFEREHLRKFN
DWSCASAIVLKCVLNRSLQATGDYASWYKELFRSDRHLFEDARDNAFNIN
APLMIDVNTCILIEEKAISVVYDSDKAVRFSCLCRTGLNGSQQPLLLINF
SGKRTAAPAVNIMQINKNGNISTSAKKYGGTTSVFFLG*
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mRNA from alignment at ScGOVlb_647:1043696..1044562-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13939.t1 ID=Gvermi13939.t1|Name=Gvermi13939.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=867bp|location=Sequence derived from alignment at ScGOVlb_647:1043696..1044562- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCAATTACTGGCTTCGAAAAGCAAAAGGACGTGATTCCAGACGTAAG
GGCCACCCAAATAAGCGGAAGTGTAGATGAGAATAATTATATGTCTTTGG
ATGTTGCACAACTCACCCAAGTTGGGCAAAATACTGGCATGTCAGTCACA
GAGAGGACCACGAAGATTCTTCTTCACTTGAAGATAGCCGTGATATCCAA
GCCTGACACAGGTACCATAGCTCTGCGAGATGTTTCAGGTGAATGTGGAT
CCTGTTGGAATATCGAAAGTTGGAGAGCAAACATAAGGGGATGCAAGTTT
GTTCTTGTACAAACCTGGGACGGTGGAAGCGAGTTGCAAGCCTATTGCAC
GTCGGTTTCTGGGCTTAGATTTGCCGTTAAGATGGTGACAGAACACCGAA
TGTCACTGTCTGCGAACAGTTTTGAGCGCGAACATCTGAGAAAATTCAAT
GACTGGTCATGTGCATCAGCCATTGTGTTGAAATGCGTTCTGAACAGATC
TCTGCAAGCCACCGGGGATTATGCTTCTTGGTATAAAGAGCTTTTCCGCT
CTGATCGGCACTTGTTTGAGGACGCACGCGATAATGCGTTCAATATAAAT
GCGCCTCTAATGATTGACGTGAACACGTGCATCCTTATCGAAGAGAAGGC
TATATCTGTCGTCTATGACAGTGATAAAGCAGTTCGATTCTCTTGCCTCT
GTCGAACAGGCTTAAATGGCTCTCAACAGCCGCTGTTGTTGATAAACTTC
AGCGGGAAGCGCACTGCGGCACCTGCCGTAAATATCATGCAGATAAATAA
GAACGGAAATATCTCGACAAGCGCAAAGAAATATGGGGGAACCACATCGG
TTTTCTTTTTGGGTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_647:1043696..1044562-

>Gvermi13939.t1 ID=Gvermi13939.t1|Name=Gvermi13939.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=867bp|location=Sequence derived from alignment at ScGOVlb_647:1043696..1044562- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCAATTACTGGCTTCGAAAAGCAAAAGGACGTGATTCCAGACGTAAG
GGCCACCCAAATAAGCGGAAGTGTAGATGAGAATAATTATATGTCTTTGG
ATGTTGCACAACTCACCCAAGTTGGGCAAAATACTGGCATGTCAGTCACA
GAGAGGACCACGAAGATTCTTCTTCACTTGAAGATAGCCGTGATATCCAA
GCCTGACACAGGTACCATAGCTCTGCGAGATGTTTCAGGTGAATGTGGAT
CCTGTTGGAATATCGAAAGTTGGAGAGCAAACATAAGGGGATGCAAGTTT
GTTCTTGTACAAACCTGGGACGGTGGAAGCGAGTTGCAAGCCTATTGCAC
GTCGGTTTCTGGGCTTAGATTTGCCGTTAAGATGGTGACAGAACACCGAA
TGTCACTGTCTGCGAACAGTTTTGAGCGCGAACATCTGAGAAAATTCAAT
GACTGGTCATGTGCATCAGCCATTGTGTTGAAATGCGTTCTGAACAGATC
TCTGCAAGCCACCGGGGATTATGCTTCTTGGTATAAAGAGCTTTTCCGCT
CTGATCGGCACTTGTTTGAGGACGCACGCGATAATGCGTTCAATATAAAT
GCGCCTCTAATGATTGACGTGAACACGTGCATCCTTATCGAAGAGAAGGC
TATATCTGTCGTCTATGACAGTGATAAAGCAGTTCGATTCTCTTGCCTCT
GTCGAACAGGCTTAAATGGCTCTCAACAGCCGCTGTTGTTGATAAACTTC
AGCGGGAAGCGCACTGCGGCACCTGCCGTAAATATCATGCAGATAAATAA
GAACGGAAATATCTCGACAAGCGCAAAGAAATATGGGGGAACCACATCGG
TTTTCTTTTTGGGTTGA
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