Gvermi13936.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13936.t1
Unique NameGvermi13936.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length511
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:1038796..1040328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LU31
PFAMsLrgB
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006811,GO:0006820,GO:0006855,GO:0006996,GO:0008028,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0008643,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009657,GO:0009658,GO:0009706,GO:0009853,GO:0009941,GO:0009987,GO:0015075,GO:0015144,GO:0015238,GO:0015318,GO:0015665,GO:0015711,GO:0015718,GO:0015849,GO:0015850,GO:0015893,GO:0016020,GO:0016043,GO:0019866,GO:0022857,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0034219,GO:0034220,GO:0042170,GO:0042221,GO:0042493,GO:0042873,GO:0042879,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043879,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071840,GO:0097339,GO:0098656,GO:1900866,GO:1901618,GO:1901974,GO:1901975,GO:1903825,GO:1905039
Evalue1.06e-61
EggNOG OGsCOG1346@1|root,2QQ63@2759|Eukaryota
DescriptionLrgB-like family
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13936Gvermi13936Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 1038796..1040328 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13936.t1.stop1Gvermi13936.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 1038796..1038798 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13936.t1.CDS1Gvermi13936.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 1038796..1040328 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13936.t1.exon1Gvermi13936.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 1038796..1040328 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13936.t1.start1Gvermi13936.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 1040326..1040328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13936.t1Gvermi13936.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 1038796..1040328 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13936.t1 ID=Gvermi13936.t1|Name=Gvermi13936.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=511bp
MHSRSPRFCFVATPSALRRFPSAVKSAADTRPLPSRTTVKRSAFIPHLTS
TRSRHVSSVKRKTPSASASSEASASPTVSTGIAPFLLSTAHCVASLALLI
IIQRSVGTGLASLSISFPAPLASMLLLLALLSVMRVFSSPFVDRLNSLLF
NPSVAFLTRWLAVFFAPNLIMLPLAPSLPSAHIAKIGLIIVCGFFFTLLS
TAAVCVTLRSVVSIATGKPPATLSIAPSKGIPPSNRLILLFAVLTMAFFA
LASRSVQHAATAYALFATLLTFSVGQRFPSRLKMFLHPLITCTCGTIGAV
ALLASVTSTPFSAMLATYYTRGAAWGAGDILASLLGPAVITFAFTMDRQR
RLAMARVVEVVFGTLFATLTSLFGTAFVARALKLPADTALIVLPRTVTAP
LAVAMADLLGANMGLAASVVALTGLLGANIAASVLTALRVRDPVVRGLSV
GASAHGLGTAALSDESGAFPFAALAMTLVGIFSTIFIAFPPLRAMVVRVA
VGLATKTAVQ*
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spliced messenger RNA

>Gvermi13936.t1 ID=Gvermi13936.t1|Name=Gvermi13936.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at ScGOVlb_647:1038796..1040328- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTCGCGTTCGCCCAGGTTCTGCTTTGTCGCCACTCCGTCTGCTCT
GCGGCGCTTCCCGTCAGCTGTGAAATCCGCTGCAGATACCAGGCCCCTTC
CATCAAGAACCACTGTGAAAAGGTCGGCATTCATTCCCCATCTGACCTCT
ACACGCTCAAGACATGTATCAAGCGTCAAGCGGAAAACTCCGAGCGCTTC
TGCTAGCTCGGAGGCTTCGGCTTCACCCACGGTGTCCACAGGGATCGCTC
CTTTTCTATTGTCAACCGCGCATTGCGTAGCGTCGCTGGCGCTCCTGATC
ATCATTCAGCGGTCCGTTGGAACTGGATTAGCTTCTTTGAGTATTTCGTT
TCCTGCTCCATTGGCTTCAATGCTCCTTCTACTCGCTCTCCTATCCGTGA
TGCGAGTGTTCTCATCCCCGTTTGTTGACCGTCTTAATTCTTTGCTTTTC
AATCCGTCTGTCGCGTTCTTGACACGATGGCTTGCAGTTTTCTTCGCCCC
TAATTTGATCATGCTCCCGTTGGCACCGTCTTTGCCCAGCGCCCACATAG
CAAAGATTGGTCTCATAATCGTCTGTGGCTTTTTCTTCACATTGCTGTCA
ACAGCAGCGGTGTGCGTTACATTACGATCTGTGGTTTCGATTGCAACAGG
GAAACCCCCGGCAACTCTGTCCATCGCACCATCAAAGGGCATACCTCCGT
CCAATCGGCTCATCCTTTTATTTGCAGTTCTAACGATGGCTTTCTTCGCT
CTTGCTTCTCGTTCCGTGCAACATGCTGCCACTGCTTACGCGCTGTTTGC
AACTCTTTTGACGTTTTCGGTCGGTCAGCGATTCCCCTCTAGACTCAAGA
TGTTTCTACACCCCCTGATTACATGTACCTGCGGGACAATAGGCGCGGTA
GCATTACTCGCATCTGTGACATCCACTCCGTTCTCTGCGATGCTGGCGAC
TTACTACACGCGCGGAGCTGCGTGGGGTGCTGGTGACATCCTCGCCTCTC
TTCTGGGGCCGGCTGTCATTACGTTTGCGTTCACCATGGATCGGCAGCGC
AGACTTGCCATGGCAAGAGTCGTGGAAGTTGTGTTCGGAACGCTGTTTGC
CACTCTCACGTCTTTATTCGGCACCGCATTTGTCGCTCGTGCACTGAAGC
TGCCTGCGGATACGGCGCTGATCGTCTTACCACGCACGGTAACGGCGCCC
CTAGCAGTGGCAATGGCCGATCTGCTGGGTGCCAACATGGGACTCGCCGC
AAGTGTAGTCGCCTTGACCGGACTGCTCGGGGCAAACATTGCAGCCAGTG
TGCTCACCGCGCTCCGCGTGAGGGACCCTGTAGTGAGAGGGCTTTCTGTC
GGGGCCTCTGCGCACGGACTGGGCACAGCGGCGTTGAGCGACGAAAGTGG
CGCGTTTCCGTTTGCGGCGCTGGCAATGACGTTGGTGGGAATCTTTAGCA
CGATTTTCATCGCCTTCCCGCCGCTGCGCGCGATGGTTGTGCGTGTGGCC
GTTGGGCTCGCGACAAAGACTGCGGTACAATGA
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protein sequence of Gvermi13936.t1

>Gvermi13936.t1 ID=Gvermi13936.t1|Name=Gvermi13936.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=511bp
MHSRSPRFCFVATPSALRRFPSAVKSAADTRPLPSRTTVKRSAFIPHLTS
TRSRHVSSVKRKTPSASASSEASASPTVSTGIAPFLLSTAHCVASLALLI
IIQRSVGTGLASLSISFPAPLASMLLLLALLSVMRVFSSPFVDRLNSLLF
NPSVAFLTRWLAVFFAPNLIMLPLAPSLPSAHIAKIGLIIVCGFFFTLLS
TAAVCVTLRSVVSIATGKPPATLSIAPSKGIPPSNRLILLFAVLTMAFFA
LASRSVQHAATAYALFATLLTFSVGQRFPSRLKMFLHPLITCTCGTIGAV
ALLASVTSTPFSAMLATYYTRGAAWGAGDILASLLGPAVITFAFTMDRQR
RLAMARVVEVVFGTLFATLTSLFGTAFVARALKLPADTALIVLPRTVTAP
LAVAMADLLGANMGLAASVVALTGLLGANIAASVLTALRVRDPVVRGLSV
GASAHGLGTAALSDESGAFPFAALAMTLVGIFSTIFIAFPPLRAMVVRVA
VGLATKTAVQ*
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mRNA from alignment at ScGOVlb_647:1038796..1040328-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13936.t1 ID=Gvermi13936.t1|Name=Gvermi13936.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at ScGOVlb_647:1038796..1040328- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATTCGCGTTCGCCCAGGTTCTGCTTTGTCGCCACTCCGTCTGCTCT
GCGGCGCTTCCCGTCAGCTGTGAAATCCGCTGCAGATACCAGGCCCCTTC
CATCAAGAACCACTGTGAAAAGGTCGGCATTCATTCCCCATCTGACCTCT
ACACGCTCAAGACATGTATCAAGCGTCAAGCGGAAAACTCCGAGCGCTTC
TGCTAGCTCGGAGGCTTCGGCTTCACCCACGGTGTCCACAGGGATCGCTC
CTTTTCTATTGTCAACCGCGCATTGCGTAGCGTCGCTGGCGCTCCTGATC
ATCATTCAGCGGTCCGTTGGAACTGGATTAGCTTCTTTGAGTATTTCGTT
TCCTGCTCCATTGGCTTCAATGCTCCTTCTACTCGCTCTCCTATCCGTGA
TGCGAGTGTTCTCATCCCCGTTTGTTGACCGTCTTAATTCTTTGCTTTTC
AATCCGTCTGTCGCGTTCTTGACACGATGGCTTGCAGTTTTCTTCGCCCC
TAATTTGATCATGCTCCCGTTGGCACCGTCTTTGCCCAGCGCCCACATAG
CAAAGATTGGTCTCATAATCGTCTGTGGCTTTTTCTTCACATTGCTGTCA
ACAGCAGCGGTGTGCGTTACATTACGATCTGTGGTTTCGATTGCAACAGG
GAAACCCCCGGCAACTCTGTCCATCGCACCATCAAAGGGCATACCTCCGT
CCAATCGGCTCATCCTTTTATTTGCAGTTCTAACGATGGCTTTCTTCGCT
CTTGCTTCTCGTTCCGTGCAACATGCTGCCACTGCTTACGCGCTGTTTGC
AACTCTTTTGACGTTTTCGGTCGGTCAGCGATTCCCCTCTAGACTCAAGA
TGTTTCTACACCCCCTGATTACATGTACCTGCGGGACAATAGGCGCGGTA
GCATTACTCGCATCTGTGACATCCACTCCGTTCTCTGCGATGCTGGCGAC
TTACTACACGCGCGGAGCTGCGTGGGGTGCTGGTGACATCCTCGCCTCTC
TTCTGGGGCCGGCTGTCATTACGTTTGCGTTCACCATGGATCGGCAGCGC
AGACTTGCCATGGCAAGAGTCGTGGAAGTTGTGTTCGGAACGCTGTTTGC
CACTCTCACGTCTTTATTCGGCACCGCATTTGTCGCTCGTGCACTGAAGC
TGCCTGCGGATACGGCGCTGATCGTCTTACCACGCACGGTAACGGCGCCC
CTAGCAGTGGCAATGGCCGATCTGCTGGGTGCCAACATGGGACTCGCCGC
AAGTGTAGTCGCCTTGACCGGACTGCTCGGGGCAAACATTGCAGCCAGTG
TGCTCACCGCGCTCCGCGTGAGGGACCCTGTAGTGAGAGGGCTTTCTGTC
GGGGCCTCTGCGCACGGACTGGGCACAGCGGCGTTGAGCGACGAAAGTGG
CGCGTTTCCGTTTGCGGCGCTGGCAATGACGTTGGTGGGAATCTTTAGCA
CGATTTTCATCGCCTTCCCGCCGCTGCGCGCGATGGTTGTGCGTGTGGCC
GTTGGGCTCGCGACAAAGACTGCGGTACAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_647:1038796..1040328-

>Gvermi13936.t1 ID=Gvermi13936.t1|Name=Gvermi13936.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1533bp|location=Sequence derived from alignment at ScGOVlb_647:1038796..1040328- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATTCGCGTTCGCCCAGGTTCTGCTTTGTCGCCACTCCGTCTGCTCT
GCGGCGCTTCCCGTCAGCTGTGAAATCCGCTGCAGATACCAGGCCCCTTC
CATCAAGAACCACTGTGAAAAGGTCGGCATTCATTCCCCATCTGACCTCT
ACACGCTCAAGACATGTATCAAGCGTCAAGCGGAAAACTCCGAGCGCTTC
TGCTAGCTCGGAGGCTTCGGCTTCACCCACGGTGTCCACAGGGATCGCTC
CTTTTCTATTGTCAACCGCGCATTGCGTAGCGTCGCTGGCGCTCCTGATC
ATCATTCAGCGGTCCGTTGGAACTGGATTAGCTTCTTTGAGTATTTCGTT
TCCTGCTCCATTGGCTTCAATGCTCCTTCTACTCGCTCTCCTATCCGTGA
TGCGAGTGTTCTCATCCCCGTTTGTTGACCGTCTTAATTCTTTGCTTTTC
AATCCGTCTGTCGCGTTCTTGACACGATGGCTTGCAGTTTTCTTCGCCCC
TAATTTGATCATGCTCCCGTTGGCACCGTCTTTGCCCAGCGCCCACATAG
CAAAGATTGGTCTCATAATCGTCTGTGGCTTTTTCTTCACATTGCTGTCA
ACAGCAGCGGTGTGCGTTACATTACGATCTGTGGTTTCGATTGCAACAGG
GAAACCCCCGGCAACTCTGTCCATCGCACCATCAAAGGGCATACCTCCGT
CCAATCGGCTCATCCTTTTATTTGCAGTTCTAACGATGGCTTTCTTCGCT
CTTGCTTCTCGTTCCGTGCAACATGCTGCCACTGCTTACGCGCTGTTTGC
AACTCTTTTGACGTTTTCGGTCGGTCAGCGATTCCCCTCTAGACTCAAGA
TGTTTCTACACCCCCTGATTACATGTACCTGCGGGACAATAGGCGCGGTA
GCATTACTCGCATCTGTGACATCCACTCCGTTCTCTGCGATGCTGGCGAC
TTACTACACGCGCGGAGCTGCGTGGGGTGCTGGTGACATCCTCGCCTCTC
TTCTGGGGCCGGCTGTCATTACGTTTGCGTTCACCATGGATCGGCAGCGC
AGACTTGCCATGGCAAGAGTCGTGGAAGTTGTGTTCGGAACGCTGTTTGC
CACTCTCACGTCTTTATTCGGCACCGCATTTGTCGCTCGTGCACTGAAGC
TGCCTGCGGATACGGCGCTGATCGTCTTACCACGCACGGTAACGGCGCCC
CTAGCAGTGGCAATGGCCGATCTGCTGGGTGCCAACATGGGACTCGCCGC
AAGTGTAGTCGCCTTGACCGGACTGCTCGGGGCAAACATTGCAGCCAGTG
TGCTCACCGCGCTCCGCGTGAGGGACCCTGTAGTGAGAGGGCTTTCTGTC
GGGGCCTCTGCGCACGGACTGGGCACAGCGGCGTTGAGCGACGAAAGTGG
CGCGTTTCCGTTTGCGGCGCTGGCAATGACGTTGGTGGGAATCTTTAGCA
CGATTTTCATCGCCTTCCCGCCGCTGCGCGCGATGGTTGTGCGTGTGGCC
GTTGGGCTCGCGACAAAGACTGCGGTACAATGA
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