Gvermi13935.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13935.t1
Unique NameGvermi13935.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length143
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:1038352..1038780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706127.1
Preferred nameMGST3
PFAMsMAPEG
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418
GOsGO:0003674,GO:0003824,GO:0004364,GO:0004464,GO:0004601,GO:0004602,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006629,GO:0006690,GO:0006691,GO:0006790,GO:0006805,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009410,GO:0009636,GO:0009987,GO:0012505,GO:0016020,GO:0016053,GO:0016209,GO:0016491,GO:0016684,GO:0016740,GO:0016765,GO:0016829,GO:0016846,GO:0019370,GO:0019752,GO:0031967,GO:0031975,GO:0031984,GO:0042175,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046456,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071466,GO:0071704,GO:0097237,GO:0098754,GO:0098827,GO:0098869,GO:1901564,GO:1901566,GO:1901568,GO:1901570,GO:1901576,GO:1901685,GO:1901687,GO:1990748
Evalue7.57e-32
EggNOG OGs2CUIV@1|root,2S4E5@2759|Eukaryota
EC2.5.1.18
Descriptionleukotriene-C4 synthase activity
COG categoryS
BRITEko00000,ko00001,ko01000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13935Gvermi13935Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 1038352..1038780 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13935.t1.start1Gvermi13935.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 1038352..1038354 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13935.t1.CDS1Gvermi13935.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 1038352..1038780 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13935.t1.exon1Gvermi13935.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 1038352..1038780 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13935.t1.stop1Gvermi13935.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 1038778..1038780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13935.t1Gvermi13935.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 1038352..1038780 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13935.t1 ID=Gvermi13935.t1|Name=Gvermi13935.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=143bp
MVLGGTISLEIPRLYSLVIITSIVNWMVLFWQMMAVGSARKRFDIPYPML
YENKQPSTFNCIQRAHQNSLEWNQGFLLFLFVSGLTTPLLSTAAGMTYNF
GRVAYAKGYHQGNPHKGLWGLYGLFYLLGGSVYTAIKLMRQD*
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spliced messenger RNA

>Gvermi13935.t1 ID=Gvermi13935.t1|Name=Gvermi13935.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=429bp|location=Sequence derived from alignment at ScGOVlb_647:1038352..1038780+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCTCGGCGGAACGATCTCTCTCGAGATTCCGCGCCTGTACAGTTT
GGTCATCATCACATCCATCGTCAACTGGATGGTTCTGTTTTGGCAGATGA
TGGCGGTGGGAAGCGCCCGTAAGCGCTTTGATATTCCCTATCCCATGCTG
TATGAGAACAAGCAACCGTCAACCTTCAACTGCATTCAGAGAGCCCATCA
GAATTCTTTGGAATGGAACCAAGGCTTCCTTTTGTTTCTCTTCGTATCCG
GCCTGACCACACCGTTGCTATCCACTGCCGCCGGCATGACCTATAATTTT
GGCCGCGTTGCCTACGCTAAAGGCTATCACCAGGGGAATCCTCACAAAGG
ACTTTGGGGTCTCTACGGTCTGTTTTACTTGTTGGGCGGGAGTGTCTACA
CAGCAATCAAGCTTATGAGACAAGATTAA
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protein sequence of Gvermi13935.t1

>Gvermi13935.t1 ID=Gvermi13935.t1|Name=Gvermi13935.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=143bp
MVLGGTISLEIPRLYSLVIITSIVNWMVLFWQMMAVGSARKRFDIPYPML
YENKQPSTFNCIQRAHQNSLEWNQGFLLFLFVSGLTTPLLSTAAGMTYNF
GRVAYAKGYHQGNPHKGLWGLYGLFYLLGGSVYTAIKLMRQD*
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mRNA from alignment at ScGOVlb_647:1038352..1038780+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13935.t1 ID=Gvermi13935.t1|Name=Gvermi13935.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=429bp|location=Sequence derived from alignment at ScGOVlb_647:1038352..1038780+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGCTCGGCGGAACGATCTCTCTCGAGATTCCGCGCCTGTACAGTTT
GGTCATCATCACATCCATCGTCAACTGGATGGTTCTGTTTTGGCAGATGA
TGGCGGTGGGAAGCGCCCGTAAGCGCTTTGATATTCCCTATCCCATGCTG
TATGAGAACAAGCAACCGTCAACCTTCAACTGCATTCAGAGAGCCCATCA
GAATTCTTTGGAATGGAACCAAGGCTTCCTTTTGTTTCTCTTCGTATCCG
GCCTGACCACACCGTTGCTATCCACTGCCGCCGGCATGACCTATAATTTT
GGCCGCGTTGCCTACGCTAAAGGCTATCACCAGGGGAATCCTCACAAAGG
ACTTTGGGGTCTCTACGGTCTGTTTTACTTGTTGGGCGGGAGTGTCTACA
CAGCAATCAAGCTTATGAGACAAGATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_647:1038352..1038780+

>Gvermi13935.t1 ID=Gvermi13935.t1|Name=Gvermi13935.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=429bp|location=Sequence derived from alignment at ScGOVlb_647:1038352..1038780+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGCTCGGCGGAACGATCTCTCTCGAGATTCCGCGCCTGTACAGTTT
GGTCATCATCACATCCATCGTCAACTGGATGGTTCTGTTTTGGCAGATGA
TGGCGGTGGGAAGCGCCCGTAAGCGCTTTGATATTCCCTATCCCATGCTG
TATGAGAACAAGCAACCGTCAACCTTCAACTGCATTCAGAGAGCCCATCA
GAATTCTTTGGAATGGAACCAAGGCTTCCTTTTGTTTCTCTTCGTATCCG
GCCTGACCACACCGTTGCTATCCACTGCCGCCGGCATGACCTATAATTTT
GGCCGCGTTGCCTACGCTAAAGGCTATCACCAGGGGAATCCTCACAAAGG
ACTTTGGGGTCTCTACGGTCTGTTTTACTTGTTGGGCGGGAGTGTCTACA
CAGCAATCAAGCTTATGAGACAAGATTAA
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