Gvermi13933.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13933.t1
Unique NameGvermi13933.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length502
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:1035306..1036811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ07294
PFAMsGround-like,Hint,Kelch_4
Max annot lvl2759|Eukaryota
KEGG koko:K06224,ko:K11990,ko:K16669
KEGG Pathwayko04340,ko04341,ko04391,ko04392,map04340,map04341,map04391,map04392
KEGG ModuleM00678
GOsGO:0003002,GO:0003674,GO:0003824,GO:0004175,GO:0005102,GO:0005488,GO:0005496,GO:0005515,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0007154,GO:0007267,GO:0007275,GO:0007350,GO:0007365,GO:0007367,GO:0007389,GO:0008150,GO:0008152,GO:0008233,GO:0008289,GO:0009790,GO:0009880,GO:0009987,GO:0010467,GO:0015485,GO:0016020,GO:0016485,GO:0016540,GO:0016787,GO:0019538,GO:0023052,GO:0032501,GO:0032502,GO:0032934,GO:0035282,GO:0036094,GO:0043170,GO:0043178,GO:0044238,GO:0044464,GO:0048856,GO:0051604,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0140096,GO:1901564
Evalue1.5e-22
EggNOG OGsKOG3638@1|root,KOG3638@2759|Eukaryota
Descriptionintein-mediated protein splicing
COG categoryM
BRITEko00000,ko00001,ko00002,ko00536,ko01002,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13933Gvermi13933Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 1035306..1036811 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13933.t1.start1Gvermi13933.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 1035306..1035308 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13933.t1.CDS1Gvermi13933.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 1035306..1036811 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13933.t1.exon1Gvermi13933.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 1035306..1036811 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13933.t1.stop1Gvermi13933.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 1036809..1036811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13933.t1Gvermi13933.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 1035306..1036811 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13933.t1 ID=Gvermi13933.t1|Name=Gvermi13933.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=502bp
MAMFLNILVASLAVCYAVSLGVKSPRVFSENYIEGIYGRFFEFSDQGNSA
PCPQIIDHYKRGRPSALGDSWIIPHGNILQSGAKCTDGGLLVLNSYNESS
RMPKVLESNRIAEETFTLMKEESTGFWMGADERRCGKWVFPGRTFIFFVK
EFDRTLTTSFRLTLTPGKKYMFAVADQFTCIYVDIPRKNPDPPVIVTTPS
GSKPPTSTRPSPGPSNEPTTGEGTSTENESSEDKTPTPTPATGNDTESED
GASMDGDQDSGDGDSNGGLSIVDVDNGQVPEETGDEASGTIGDLGTDDDD
EESVEESSDSFDIELNNGESVCFPGDAEVELVDGTLRKMDQLAIGDEVRV
GKQFSRVFMFTHDKANIMHSFVQLESDSGRKLALTRGHMLYVNGAIRPAQ
EVKVGDKLRVVDNIEEVIRVSTVVKKGLFNPQTVHGDIMVNGFLTTTYTT
AIDMQAAHSLLLPIRAIWNMVGKDVAPRDVNWSGIRSNLMSILNIFAGRK
Q*
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spliced messenger RNA

>Gvermi13933.t1 ID=Gvermi13933.t1|Name=Gvermi13933.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1506bp|location=Sequence derived from alignment at ScGOVlb_647:1035306..1036811+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGATGTTTCTTAACATTCTCGTGGCCAGTTTGGCAGTGTGCTATGC
AGTCTCGCTCGGAGTAAAATCCCCTCGTGTTTTCTCAGAAAACTACATTG
AAGGCATATACGGAAGATTCTTCGAATTTTCCGATCAAGGCAACTCCGCT
CCATGCCCGCAGATTATCGATCACTATAAACGTGGTCGACCCAGCGCTCT
AGGCGATTCATGGATCATTCCTCATGGAAATATCTTGCAAAGCGGTGCGA
AGTGTACCGATGGTGGCCTTCTTGTCCTCAACTCGTACAACGAATCAAGC
CGAATGCCGAAGGTTCTAGAATCAAATCGCATTGCAGAAGAAACATTTAC
GCTGATGAAGGAAGAATCAACCGGTTTCTGGATGGGTGCTGACGAACGAA
GATGTGGAAAATGGGTTTTCCCTGGTCGTACCTTCATCTTTTTTGTCAAA
GAGTTTGATCGTACATTGACAACTTCATTCCGACTTACTTTAACACCTGG
TAAGAAGTACATGTTTGCTGTAGCTGATCAATTCACATGTATTTATGTCG
ATATCCCTCGGAAAAATCCTGATCCCCCAGTAATCGTTACCACTCCCAGT
GGATCCAAACCACCGACAAGCACTAGACCAAGCCCCGGACCAAGCAATGA
ACCAACCACAGGAGAGGGGACTTCTACTGAAAACGAGTCATCAGAAGACA
AGACTCCAACCCCTACACCTGCAACCGGTAACGACACAGAATCTGAGGAT
GGTGCTTCGATGGATGGAGACCAGGATTCAGGCGACGGTGATTCAAATGG
TGGACTATCCATTGTGGATGTGGACAATGGCCAGGTTCCTGAGGAAACTG
GAGACGAAGCGAGTGGAACCATTGGCGACTTGGGCACAGATGATGACGAT
GAAGAAAGCGTGGAGGAGTCCTCTGACTCATTCGACATTGAACTGAACAA
TGGCGAATCGGTCTGTTTCCCGGGTGACGCAGAGGTTGAGTTGGTGGACG
GAACGTTGAGAAAAATGGATCAACTTGCTATTGGAGATGAAGTGCGAGTC
GGAAAACAATTCTCTCGGGTGTTCATGTTCACTCACGACAAAGCTAATAT
AATGCATAGTTTCGTCCAATTGGAAAGTGACTCCGGTCGAAAGTTGGCGT
TAACTAGAGGCCATATGCTGTACGTCAACGGTGCTATCAGACCGGCACAA
GAGGTTAAGGTTGGAGACAAATTGCGTGTAGTAGACAACATTGAAGAGGT
GATAAGAGTTTCCACAGTTGTCAAGAAAGGGTTGTTCAATCCACAGACAG
TTCACGGCGATATTATGGTGAATGGTTTCTTAACTACCACCTACACGACA
GCCATCGATATGCAAGCCGCTCATTCGTTGCTATTACCGATACGAGCGAT
CTGGAACATGGTTGGTAAGGATGTCGCTCCGAGGGATGTGAACTGGTCAG
GCATCAGAAGTAATCTGATGAGCATTTTGAACATTTTTGCCGGGCGCAAG
CAATAA
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protein sequence of Gvermi13933.t1

>Gvermi13933.t1 ID=Gvermi13933.t1|Name=Gvermi13933.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=502bp
MAMFLNILVASLAVCYAVSLGVKSPRVFSENYIEGIYGRFFEFSDQGNSA
PCPQIIDHYKRGRPSALGDSWIIPHGNILQSGAKCTDGGLLVLNSYNESS
RMPKVLESNRIAEETFTLMKEESTGFWMGADERRCGKWVFPGRTFIFFVK
EFDRTLTTSFRLTLTPGKKYMFAVADQFTCIYVDIPRKNPDPPVIVTTPS
GSKPPTSTRPSPGPSNEPTTGEGTSTENESSEDKTPTPTPATGNDTESED
GASMDGDQDSGDGDSNGGLSIVDVDNGQVPEETGDEASGTIGDLGTDDDD
EESVEESSDSFDIELNNGESVCFPGDAEVELVDGTLRKMDQLAIGDEVRV
GKQFSRVFMFTHDKANIMHSFVQLESDSGRKLALTRGHMLYVNGAIRPAQ
EVKVGDKLRVVDNIEEVIRVSTVVKKGLFNPQTVHGDIMVNGFLTTTYTT
AIDMQAAHSLLLPIRAIWNMVGKDVAPRDVNWSGIRSNLMSILNIFAGRK
Q*
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mRNA from alignment at ScGOVlb_647:1035306..1036811+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13933.t1 ID=Gvermi13933.t1|Name=Gvermi13933.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1506bp|location=Sequence derived from alignment at ScGOVlb_647:1035306..1036811+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGATGTTTCTTAACATTCTCGTGGCCAGTTTGGCAGTGTGCTATGC
AGTCTCGCTCGGAGTAAAATCCCCTCGTGTTTTCTCAGAAAACTACATTG
AAGGCATATACGGAAGATTCTTCGAATTTTCCGATCAAGGCAACTCCGCT
CCATGCCCGCAGATTATCGATCACTATAAACGTGGTCGACCCAGCGCTCT
AGGCGATTCATGGATCATTCCTCATGGAAATATCTTGCAAAGCGGTGCGA
AGTGTACCGATGGTGGCCTTCTTGTCCTCAACTCGTACAACGAATCAAGC
CGAATGCCGAAGGTTCTAGAATCAAATCGCATTGCAGAAGAAACATTTAC
GCTGATGAAGGAAGAATCAACCGGTTTCTGGATGGGTGCTGACGAACGAA
GATGTGGAAAATGGGTTTTCCCTGGTCGTACCTTCATCTTTTTTGTCAAA
GAGTTTGATCGTACATTGACAACTTCATTCCGACTTACTTTAACACCTGG
TAAGAAGTACATGTTTGCTGTAGCTGATCAATTCACATGTATTTATGTCG
ATATCCCTCGGAAAAATCCTGATCCCCCAGTAATCGTTACCACTCCCAGT
GGATCCAAACCACCGACAAGCACTAGACCAAGCCCCGGACCAAGCAATGA
ACCAACCACAGGAGAGGGGACTTCTACTGAAAACGAGTCATCAGAAGACA
AGACTCCAACCCCTACACCTGCAACCGGTAACGACACAGAATCTGAGGAT
GGTGCTTCGATGGATGGAGACCAGGATTCAGGCGACGGTGATTCAAATGG
TGGACTATCCATTGTGGATGTGGACAATGGCCAGGTTCCTGAGGAAACTG
GAGACGAAGCGAGTGGAACCATTGGCGACTTGGGCACAGATGATGACGAT
GAAGAAAGCGTGGAGGAGTCCTCTGACTCATTCGACATTGAACTGAACAA
TGGCGAATCGGTCTGTTTCCCGGGTGACGCAGAGGTTGAGTTGGTGGACG
GAACGTTGAGAAAAATGGATCAACTTGCTATTGGAGATGAAGTGCGAGTC
GGAAAACAATTCTCTCGGGTGTTCATGTTCACTCACGACAAAGCTAATAT
AATGCATAGTTTCGTCCAATTGGAAAGTGACTCCGGTCGAAAGTTGGCGT
TAACTAGAGGCCATATGCTGTACGTCAACGGTGCTATCAGACCGGCACAA
GAGGTTAAGGTTGGAGACAAATTGCGTGTAGTAGACAACATTGAAGAGGT
GATAAGAGTTTCCACAGTTGTCAAGAAAGGGTTGTTCAATCCACAGACAG
TTCACGGCGATATTATGGTGAATGGTTTCTTAACTACCACCTACACGACA
GCCATCGATATGCAAGCCGCTCATTCGTTGCTATTACCGATACGAGCGAT
CTGGAACATGGTTGGTAAGGATGTCGCTCCGAGGGATGTGAACTGGTCAG
GCATCAGAAGTAATCTGATGAGCATTTTGAACATTTTTGCCGGGCGCAAG
CAATAA
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Coding sequence (CDS) from alignment at ScGOVlb_647:1035306..1036811+

>Gvermi13933.t1 ID=Gvermi13933.t1|Name=Gvermi13933.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1506bp|location=Sequence derived from alignment at ScGOVlb_647:1035306..1036811+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGATGTTTCTTAACATTCTCGTGGCCAGTTTGGCAGTGTGCTATGC
AGTCTCGCTCGGAGTAAAATCCCCTCGTGTTTTCTCAGAAAACTACATTG
AAGGCATATACGGAAGATTCTTCGAATTTTCCGATCAAGGCAACTCCGCT
CCATGCCCGCAGATTATCGATCACTATAAACGTGGTCGACCCAGCGCTCT
AGGCGATTCATGGATCATTCCTCATGGAAATATCTTGCAAAGCGGTGCGA
AGTGTACCGATGGTGGCCTTCTTGTCCTCAACTCGTACAACGAATCAAGC
CGAATGCCGAAGGTTCTAGAATCAAATCGCATTGCAGAAGAAACATTTAC
GCTGATGAAGGAAGAATCAACCGGTTTCTGGATGGGTGCTGACGAACGAA
GATGTGGAAAATGGGTTTTCCCTGGTCGTACCTTCATCTTTTTTGTCAAA
GAGTTTGATCGTACATTGACAACTTCATTCCGACTTACTTTAACACCTGG
TAAGAAGTACATGTTTGCTGTAGCTGATCAATTCACATGTATTTATGTCG
ATATCCCTCGGAAAAATCCTGATCCCCCAGTAATCGTTACCACTCCCAGT
GGATCCAAACCACCGACAAGCACTAGACCAAGCCCCGGACCAAGCAATGA
ACCAACCACAGGAGAGGGGACTTCTACTGAAAACGAGTCATCAGAAGACA
AGACTCCAACCCCTACACCTGCAACCGGTAACGACACAGAATCTGAGGAT
GGTGCTTCGATGGATGGAGACCAGGATTCAGGCGACGGTGATTCAAATGG
TGGACTATCCATTGTGGATGTGGACAATGGCCAGGTTCCTGAGGAAACTG
GAGACGAAGCGAGTGGAACCATTGGCGACTTGGGCACAGATGATGACGAT
GAAGAAAGCGTGGAGGAGTCCTCTGACTCATTCGACATTGAACTGAACAA
TGGCGAATCGGTCTGTTTCCCGGGTGACGCAGAGGTTGAGTTGGTGGACG
GAACGTTGAGAAAAATGGATCAACTTGCTATTGGAGATGAAGTGCGAGTC
GGAAAACAATTCTCTCGGGTGTTCATGTTCACTCACGACAAAGCTAATAT
AATGCATAGTTTCGTCCAATTGGAAAGTGACTCCGGTCGAAAGTTGGCGT
TAACTAGAGGCCATATGCTGTACGTCAACGGTGCTATCAGACCGGCACAA
GAGGTTAAGGTTGGAGACAAATTGCGTGTAGTAGACAACATTGAAGAGGT
GATAAGAGTTTCCACAGTTGTCAAGAAAGGGTTGTTCAATCCACAGACAG
TTCACGGCGATATTATGGTGAATGGTTTCTTAACTACCACCTACACGACA
GCCATCGATATGCAAGCCGCTCATTCGTTGCTATTACCGATACGAGCGAT
CTGGAACATGGTTGGTAAGGATGTCGCTCCGAGGGATGTGAACTGGTCAG
GCATCAGAAGTAATCTGATGAGCATTTTGAACATTTTTGCCGGGCGCAAG
CAATAA
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