Gvermi13929.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13929.t1
Unique NameGvermi13929.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length286
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:1022232..1023089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706223.1
PFAMsDHDPS,Saccharop_dh_N
Max annot lvl2759|Eukaryota
KEGG rclassRC03062,RC03063
KEGG koko:K01714
KEGG ReactionR10147
KEGG Pathwayko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230
KEGG ModuleM00016,M00525,M00526,M00527
Evalue4.33e-125
EggNOG OGsCOG0329@1|root,2QQ8M@2759|Eukaryota
EC4.3.3.7
Description4-hydroxy-tetrahydrodipicolinate synthase
COG categoryEM
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13929Gvermi13929Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 1022232..1023089 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13929.t1.start1Gvermi13929.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 1022232..1022234 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13929.t1.CDS1Gvermi13929.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 1022232..1023089 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13929.t1.exon1Gvermi13929.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 1022232..1023089 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13929.t1.stop1Gvermi13929.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 1023087..1023089 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13929.t1Gvermi13929.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 1022232..1023089 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13929.t1 ID=Gvermi13929.t1|Name=Gvermi13929.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=286bp
MVTPFKPNSSEIDYNTAEQLASHLVSFGSDALVIAGTTGESPTLTWSEQY
ELFTVVRNAVGHRTKLIAGAGSNSTAEAVEATRRASKLGLDATLQVVPYY
NKPPQEGMYQHFAHIAHAEPDLPVMLYNIPSRTGVNMQPHTIARLSHIAN
VIAVKQATADMEQLQNVRAATASDFHIYAGDDALTLPFLSMGASGVVSVA
SHFVGPQIQHLVKSYIEGDVSTATQIHMRYAKLFSDLFCMTNPIPTKTAL
RLLGWNVGGCRLPLVDATPDVEQRLARLLRELALL*
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spliced messenger RNA

>Gvermi13929.t1 ID=Gvermi13929.t1|Name=Gvermi13929.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=858bp|location=Sequence derived from alignment at ScGOVlb_647:1022232..1023089+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCACCCCGTTCAAGCCAAACTCCTCTGAGATCGACTACAACACCGC
CGAGCAGCTCGCCTCGCACCTCGTGTCCTTCGGGTCCGACGCCCTCGTCA
TCGCCGGCACCACCGGCGAGTCGCCCACCCTCACCTGGTCCGAGCAGTAC
GAGCTCTTCACCGTCGTGCGCAACGCCGTCGGCCACCGCACCAAGCTCAT
CGCCGGCGCGGGCTCCAACTCCACCGCCGAGGCCGTCGAGGCCACGCGCC
GCGCCAGCAAGCTCGGCCTGGACGCCACGCTGCAGGTCGTGCCCTACTAC
AACAAGCCCCCGCAGGAGGGCATGTACCAGCACTTTGCGCACATTGCACA
CGCCGAGCCGGACCTCCCCGTCATGCTGTACAACATCCCGTCGCGCACCG
GCGTCAACATGCAGCCGCACACCATCGCGCGCCTGTCGCACATCGCCAAC
GTCATCGCCGTCAAGCAGGCCACCGCCGACATGGAGCAGCTGCAGAATGT
GCGCGCCGCCACTGCGTCCGACTTCCACATCTACGCCGGCGATGACGCCC
TCACCCTGCCCTTCCTCTCCATGGGCGCCTCCGGCGTCGTCAGCGTGGCC
AGCCATTTTGTCGGCCCGCAGATTCAGCACCTCGTCAAGTCGTACATTGA
AGGCGACGTTTCAACCGCCACGCAAATCCACATGCGCTACGCCAAGTTGT
TTTCGGATCTGTTTTGTATGACCAACCCCATACCGACAAAGACCGCCCTT
CGTCTTCTGGGCTGGAATGTTGGCGGCTGCCGACTTCCGCTCGTCGACGC
CACCCCGGACGTGGAGCAACGACTTGCGCGATTGTTGCGCGAACTAGCTT
TGCTGTGA
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protein sequence of Gvermi13929.t1

>Gvermi13929.t1 ID=Gvermi13929.t1|Name=Gvermi13929.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=286bp
MVTPFKPNSSEIDYNTAEQLASHLVSFGSDALVIAGTTGESPTLTWSEQY
ELFTVVRNAVGHRTKLIAGAGSNSTAEAVEATRRASKLGLDATLQVVPYY
NKPPQEGMYQHFAHIAHAEPDLPVMLYNIPSRTGVNMQPHTIARLSHIAN
VIAVKQATADMEQLQNVRAATASDFHIYAGDDALTLPFLSMGASGVVSVA
SHFVGPQIQHLVKSYIEGDVSTATQIHMRYAKLFSDLFCMTNPIPTKTAL
RLLGWNVGGCRLPLVDATPDVEQRLARLLRELALL*
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mRNA from alignment at ScGOVlb_647:1022232..1023089+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13929.t1 ID=Gvermi13929.t1|Name=Gvermi13929.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=858bp|location=Sequence derived from alignment at ScGOVlb_647:1022232..1023089+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCACCCCGTTCAAGCCAAACTCCTCTGAGATCGACTACAACACCGC
CGAGCAGCTCGCCTCGCACCTCGTGTCCTTCGGGTCCGACGCCCTCGTCA
TCGCCGGCACCACCGGCGAGTCGCCCACCCTCACCTGGTCCGAGCAGTAC
GAGCTCTTCACCGTCGTGCGCAACGCCGTCGGCCACCGCACCAAGCTCAT
CGCCGGCGCGGGCTCCAACTCCACCGCCGAGGCCGTCGAGGCCACGCGCC
GCGCCAGCAAGCTCGGCCTGGACGCCACGCTGCAGGTCGTGCCCTACTAC
AACAAGCCCCCGCAGGAGGGCATGTACCAGCACTTTGCGCACATTGCACA
CGCCGAGCCGGACCTCCCCGTCATGCTGTACAACATCCCGTCGCGCACCG
GCGTCAACATGCAGCCGCACACCATCGCGCGCCTGTCGCACATCGCCAAC
GTCATCGCCGTCAAGCAGGCCACCGCCGACATGGAGCAGCTGCAGAATGT
GCGCGCCGCCACTGCGTCCGACTTCCACATCTACGCCGGCGATGACGCCC
TCACCCTGCCCTTCCTCTCCATGGGCGCCTCCGGCGTCGTCAGCGTGGCC
AGCCATTTTGTCGGCCCGCAGATTCAGCACCTCGTCAAGTCGTACATTGA
AGGCGACGTTTCAACCGCCACGCAAATCCACATGCGCTACGCCAAGTTGT
TTTCGGATCTGTTTTGTATGACCAACCCCATACCGACAAAGACCGCCCTT
CGTCTTCTGGGCTGGAATGTTGGCGGCTGCCGACTTCCGCTCGTCGACGC
CACCCCGGACGTGGAGCAACGACTTGCGCGATTGTTGCGCGAACTAGCTT
TGCTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_647:1022232..1023089+

>Gvermi13929.t1 ID=Gvermi13929.t1|Name=Gvermi13929.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=858bp|location=Sequence derived from alignment at ScGOVlb_647:1022232..1023089+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCACCCCGTTCAAGCCAAACTCCTCTGAGATCGACTACAACACCGC
CGAGCAGCTCGCCTCGCACCTCGTGTCCTTCGGGTCCGACGCCCTCGTCA
TCGCCGGCACCACCGGCGAGTCGCCCACCCTCACCTGGTCCGAGCAGTAC
GAGCTCTTCACCGTCGTGCGCAACGCCGTCGGCCACCGCACCAAGCTCAT
CGCCGGCGCGGGCTCCAACTCCACCGCCGAGGCCGTCGAGGCCACGCGCC
GCGCCAGCAAGCTCGGCCTGGACGCCACGCTGCAGGTCGTGCCCTACTAC
AACAAGCCCCCGCAGGAGGGCATGTACCAGCACTTTGCGCACATTGCACA
CGCCGAGCCGGACCTCCCCGTCATGCTGTACAACATCCCGTCGCGCACCG
GCGTCAACATGCAGCCGCACACCATCGCGCGCCTGTCGCACATCGCCAAC
GTCATCGCCGTCAAGCAGGCCACCGCCGACATGGAGCAGCTGCAGAATGT
GCGCGCCGCCACTGCGTCCGACTTCCACATCTACGCCGGCGATGACGCCC
TCACCCTGCCCTTCCTCTCCATGGGCGCCTCCGGCGTCGTCAGCGTGGCC
AGCCATTTTGTCGGCCCGCAGATTCAGCACCTCGTCAAGTCGTACATTGA
AGGCGACGTTTCAACCGCCACGCAAATCCACATGCGCTACGCCAAGTTGT
TTTCGGATCTGTTTTGTATGACCAACCCCATACCGACAAAGACCGCCCTT
CGTCTTCTGGGCTGGAATGTTGGCGGCTGCCGACTTCCGCTCGTCGACGC
CACCCCGGACGTGGAGCAACGACTTGCGCGATTGTTGCGCGAACTAGCTT
TGCTGTGA
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