Gvermi13928.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13928.t2
Unique NameGvermi13928.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length510
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:1017827..1019356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708406.1
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K13303
KEGG Pathwayko04068,ko04151,map04068,map04151
Evalue1.45e-56
EggNOG OGsCOG0515@1|root,KOG0690@2759|Eukaryota
EC2.7.11.1
Descriptionglycogen cell differentiation involved in embryonic placenta development
COG categoryKLT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13928Gvermi13928Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 1017827..1019656 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13928.t2.stop1Gvermi13928.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 1017827..1017829 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13928.t2.CDS1Gvermi13928.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 1017827..1019356 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13928.t2.exon1Gvermi13928.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 1017827..1019356 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13928.t2.start1Gvermi13928.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 1019354..1019356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13928.t2Gvermi13928.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 1017827..1019356 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13928.t2 ID=Gvermi13928.t2|Name=Gvermi13928.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=510bp
MAFFREQGVMRERNTPVHVDPLALLAKMPVRAEGWLYVAVHAAPGLAHGP
ITKWMFRRSVVKRFAQIRANAVLLYLNKCDAVKEMFSPVGCAVSSADTVV
NRRGAVEHNVNIAKNGYTIQLRLKSEADAEKWATELRQISLMRQPRLSDF
HLIAPIGEGASGKVFLVRDAKTGRKLALKCMSKKGGSFGHSASEFRHAVD
ERMAHQHMNDAAFIVKLRHAFQTADKLYLATEFCEGGDVYNFVDVHGGGI
SEQQARIITAQVLLGLKALHDRCIVFRDLKPENVLLDGDGRVRLADFGLC
KMLAAEEALTRTVCGTFSYAAAEILEEVGYGPSCDLWALGTFLYHIMIGR
PPRVAQSLQEARDNIFASKEPIIWYSDVMSEQAMSLVTALIEIDPKRRLG
CGPQGIAEVCAHPFFKELDWMALAKGEVPAVVTEVLPPPEMGDLRNFNQD
EWRSIRMDEDEDCPAYTESVLWPLRNLANNPLPRDFLVSYAYSCETAGAP
VAPLRRGGT*
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spliced messenger RNA

>Gvermi13928.t2 ID=Gvermi13928.t2|Name=Gvermi13928.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at ScGOVlb_647:1017827..1019356- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTCTTCCGCGAGCAGGGCGTGATGCGCGAGCGCAACACCCCCGT
GCACGTCGACCCGCTCGCGCTGCTCGCCAAGATGCCCGTGCGCGCCGAGG
GCTGGCTGTACGTCGCCGTGCACGCCGCGCCCGGCCTGGCGCACGGCCCC
ATCACCAAGTGGATGTTCCGCCGCAGCGTGGTCAAGCGCTTTGCGCAGAT
CCGCGCCAACGCCGTGCTGCTGTACCTCAACAAGTGCGACGCCGTCAAGG
AGATGTTCTCGCCGGTGGGCTGCGCCGTGTCGTCGGCCGACACCGTCGTC
AACCGCCGCGGCGCCGTGGAGCACAACGTGAACATCGCCAAGAACGGGTA
CACCATCCAGCTGCGCCTCAAGTCGGAGGCCGACGCCGAGAAGTGGGCCA
CCGAGCTGCGCCAAATCAGCCTCATGCGCCAGCCGCGCCTGTCCGACTTC
CACCTCATCGCGCCCATCGGCGAGGGCGCCAGCGGCAAGGTGTTCCTGGT
GCGCGACGCCAAGACGGGCCGCAAGCTGGCGCTCAAGTGCATGAGCAAGA
AGGGCGGCTCGTTCGGCCACTCGGCGTCCGAGTTCCGCCACGCCGTGGAC
GAGCGCATGGCGCACCAGCACATGAACGACGCGGCGTTCATCGTCAAGCT
GCGCCACGCGTTCCAGACCGCCGACAAGCTGTACCTGGCCACCGAGTTCT
GCGAGGGCGGCGACGTGTACAACTTTGTGGACGTGCACGGCGGCGGCATC
TCGGAGCAGCAGGCGCGCATCATCACGGCGCAGGTGCTGCTCGGGCTCAA
GGCGCTGCACGACCGGTGCATTGTGTTCCGCGACCTCAAGCCCGAGAACG
TGCTGCTGGACGGCGACGGGCGCGTGCGGCTGGCCGACTTTGGGCTGTGC
AAGATGCTGGCGGCCGAGGAGGCGCTGACGCGCACGGTGTGCGGCACGTT
CAGCTACGCGGCGGCGGAGATTCTGGAGGAGGTGGGGTACGGGCCGTCGT
GCGACCTGTGGGCGCTGGGCACGTTTCTGTACCACATCATGATTGGGCGG
CCGCCGCGCGTGGCGCAGAGCCTGCAGGAGGCGCGCGACAACATCTTTGC
GTCCAAGGAGCCCATCATCTGGTACTCGGACGTGATGTCGGAGCAGGCCA
TGTCGCTGGTGACGGCGCTGATCGAGATCGACCCCAAGCGGCGGCTGGGG
TGCGGGCCGCAGGGCATTGCGGAGGTGTGCGCGCACCCGTTCTTCAAGGA
GCTGGACTGGATGGCGCTGGCGAAGGGGGAGGTGCCGGCGGTGGTGACGG
AGGTGCTGCCGCCGCCGGAGATGGGCGACCTGCGCAACTTCAACCAGGAC
GAGTGGCGGAGCATCCGCATGGACGAGGACGAGGACTGCCCGGCGTACAC
GGAGAGCGTGCTGTGGCCGTTACGTAATCTGGCCAACAATCCGCTCCCGA
GAGACTTTCTGGTCAGCTACGCGTACAGCTGCGAGACGGCGGGGGCGCCG
GTGGCGCCGCTGCGCCGCGGCGGCACATAA
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protein sequence of Gvermi13928.t2

>Gvermi13928.t2 ID=Gvermi13928.t2|Name=Gvermi13928.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=510bp
MAFFREQGVMRERNTPVHVDPLALLAKMPVRAEGWLYVAVHAAPGLAHGP
ITKWMFRRSVVKRFAQIRANAVLLYLNKCDAVKEMFSPVGCAVSSADTVV
NRRGAVEHNVNIAKNGYTIQLRLKSEADAEKWATELRQISLMRQPRLSDF
HLIAPIGEGASGKVFLVRDAKTGRKLALKCMSKKGGSFGHSASEFRHAVD
ERMAHQHMNDAAFIVKLRHAFQTADKLYLATEFCEGGDVYNFVDVHGGGI
SEQQARIITAQVLLGLKALHDRCIVFRDLKPENVLLDGDGRVRLADFGLC
KMLAAEEALTRTVCGTFSYAAAEILEEVGYGPSCDLWALGTFLYHIMIGR
PPRVAQSLQEARDNIFASKEPIIWYSDVMSEQAMSLVTALIEIDPKRRLG
CGPQGIAEVCAHPFFKELDWMALAKGEVPAVVTEVLPPPEMGDLRNFNQD
EWRSIRMDEDEDCPAYTESVLWPLRNLANNPLPRDFLVSYAYSCETAGAP
VAPLRRGGT*
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mRNA from alignment at ScGOVlb_647:1017827..1019356-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13928.t2 ID=Gvermi13928.t2|Name=Gvermi13928.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at ScGOVlb_647:1017827..1019356- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCTTCTTCCGCGAGCAGGGCGTGATGCGCGAGCGCAACACCCCCGT
GCACGTCGACCCGCTCGCGCTGCTCGCCAAGATGCCCGTGCGCGCCGAGG
GCTGGCTGTACGTCGCCGTGCACGCCGCGCCCGGCCTGGCGCACGGCCCC
ATCACCAAGTGGATGTTCCGCCGCAGCGTGGTCAAGCGCTTTGCGCAGAT
CCGCGCCAACGCCGTGCTGCTGTACCTCAACAAGTGCGACGCCGTCAAGG
AGATGTTCTCGCCGGTGGGCTGCGCCGTGTCGTCGGCCGACACCGTCGTC
AACCGCCGCGGCGCCGTGGAGCACAACGTGAACATCGCCAAGAACGGGTA
CACCATCCAGCTGCGCCTCAAGTCGGAGGCCGACGCCGAGAAGTGGGCCA
CCGAGCTGCGCCAAATCAGCCTCATGCGCCAGCCGCGCCTGTCCGACTTC
CACCTCATCGCGCCCATCGGCGAGGGCGCCAGCGGCAAGGTGTTCCTGGT
GCGCGACGCCAAGACGGGCCGCAAGCTGGCGCTCAAGTGCATGAGCAAGA
AGGGCGGCTCGTTCGGCCACTCGGCGTCCGAGTTCCGCCACGCCGTGGAC
GAGCGCATGGCGCACCAGCACATGAACGACGCGGCGTTCATCGTCAAGCT
GCGCCACGCGTTCCAGACCGCCGACAAGCTGTACCTGGCCACCGAGTTCT
GCGAGGGCGGCGACGTGTACAACTTTGTGGACGTGCACGGCGGCGGCATC
TCGGAGCAGCAGGCGCGCATCATCACGGCGCAGGTGCTGCTCGGGCTCAA
GGCGCTGCACGACCGGTGCATTGTGTTCCGCGACCTCAAGCCCGAGAACG
TGCTGCTGGACGGCGACGGGCGCGTGCGGCTGGCCGACTTTGGGCTGTGC
AAGATGCTGGCGGCCGAGGAGGCGCTGACGCGCACGGTGTGCGGCACGTT
CAGCTACGCGGCGGCGGAGATTCTGGAGGAGGTGGGGTACGGGCCGTCGT
GCGACCTGTGGGCGCTGGGCACGTTTCTGTACCACATCATGATTGGGCGG
CCGCCGCGCGTGGCGCAGAGCCTGCAGGAGGCGCGCGACAACATCTTTGC
GTCCAAGGAGCCCATCATCTGGTACTCGGACGTGATGTCGGAGCAGGCCA
TGTCGCTGGTGACGGCGCTGATCGAGATCGACCCCAAGCGGCGGCTGGGG
TGCGGGCCGCAGGGCATTGCGGAGGTGTGCGCGCACCCGTTCTTCAAGGA
GCTGGACTGGATGGCGCTGGCGAAGGGGGAGGTGCCGGCGGTGGTGACGG
AGGTGCTGCCGCCGCCGGAGATGGGCGACCTGCGCAACTTCAACCAGGAC
GAGTGGCGGAGCATCCGCATGGACGAGGACGAGGACTGCCCGGCGTACAC
GGAGAGCGTGCTGTGGCCGTTACGTAATCTGGCCAACAATCCGCTCCCGA
GAGACTTTCTGGTCAGCTACGCGTACAGCTGCGAGACGGCGGGGGCGCCG
GTGGCGCCGCTGCGCCGCGGCGGCACATAA
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Coding sequence (CDS) from alignment at ScGOVlb_647:1017827..1019356-

>Gvermi13928.t2 ID=Gvermi13928.t2|Name=Gvermi13928.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1530bp|location=Sequence derived from alignment at ScGOVlb_647:1017827..1019356- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCTTCTTCCGCGAGCAGGGCGTGATGCGCGAGCGCAACACCCCCGT
GCACGTCGACCCGCTCGCGCTGCTCGCCAAGATGCCCGTGCGCGCCGAGG
GCTGGCTGTACGTCGCCGTGCACGCCGCGCCCGGCCTGGCGCACGGCCCC
ATCACCAAGTGGATGTTCCGCCGCAGCGTGGTCAAGCGCTTTGCGCAGAT
CCGCGCCAACGCCGTGCTGCTGTACCTCAACAAGTGCGACGCCGTCAAGG
AGATGTTCTCGCCGGTGGGCTGCGCCGTGTCGTCGGCCGACACCGTCGTC
AACCGCCGCGGCGCCGTGGAGCACAACGTGAACATCGCCAAGAACGGGTA
CACCATCCAGCTGCGCCTCAAGTCGGAGGCCGACGCCGAGAAGTGGGCCA
CCGAGCTGCGCCAAATCAGCCTCATGCGCCAGCCGCGCCTGTCCGACTTC
CACCTCATCGCGCCCATCGGCGAGGGCGCCAGCGGCAAGGTGTTCCTGGT
GCGCGACGCCAAGACGGGCCGCAAGCTGGCGCTCAAGTGCATGAGCAAGA
AGGGCGGCTCGTTCGGCCACTCGGCGTCCGAGTTCCGCCACGCCGTGGAC
GAGCGCATGGCGCACCAGCACATGAACGACGCGGCGTTCATCGTCAAGCT
GCGCCACGCGTTCCAGACCGCCGACAAGCTGTACCTGGCCACCGAGTTCT
GCGAGGGCGGCGACGTGTACAACTTTGTGGACGTGCACGGCGGCGGCATC
TCGGAGCAGCAGGCGCGCATCATCACGGCGCAGGTGCTGCTCGGGCTCAA
GGCGCTGCACGACCGGTGCATTGTGTTCCGCGACCTCAAGCCCGAGAACG
TGCTGCTGGACGGCGACGGGCGCGTGCGGCTGGCCGACTTTGGGCTGTGC
AAGATGCTGGCGGCCGAGGAGGCGCTGACGCGCACGGTGTGCGGCACGTT
CAGCTACGCGGCGGCGGAGATTCTGGAGGAGGTGGGGTACGGGCCGTCGT
GCGACCTGTGGGCGCTGGGCACGTTTCTGTACCACATCATGATTGGGCGG
CCGCCGCGCGTGGCGCAGAGCCTGCAGGAGGCGCGCGACAACATCTTTGC
GTCCAAGGAGCCCATCATCTGGTACTCGGACGTGATGTCGGAGCAGGCCA
TGTCGCTGGTGACGGCGCTGATCGAGATCGACCCCAAGCGGCGGCTGGGG
TGCGGGCCGCAGGGCATTGCGGAGGTGTGCGCGCACCCGTTCTTCAAGGA
GCTGGACTGGATGGCGCTGGCGAAGGGGGAGGTGCCGGCGGTGGTGACGG
AGGTGCTGCCGCCGCCGGAGATGGGCGACCTGCGCAACTTCAACCAGGAC
GAGTGGCGGAGCATCCGCATGGACGAGGACGAGGACTGCCCGGCGTACAC
GGAGAGCGTGCTGTGGCCGTTACGTAATCTGGCCAACAATCCGCTCCCGA
GAGACTTTCTGGTCAGCTACGCGTACAGCTGCGAGACGGCGGGGGCGCCG
GTGGCGCCGCTGCGCCGCGGCGGCACATAA
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