Gvermi13905.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13905.t1
Unique NameGvermi13905.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length366
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:812472..813569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog67593.Physo155728
PFAMsC2,Copine
Max annot lvl4776|Peronosporales
Evalue1.27e-05
EggNOG OGsKOG1327@1|root,KOG1327@2759|Eukaryota,3QEJ6@4776|Peronosporales
DescriptionCopine
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13905Gvermi13905Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 812472..813569 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13905.t1.stop1Gvermi13905.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 812472..812474 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13905.t1.CDS1Gvermi13905.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 812472..813569 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13905.t1.exon1Gvermi13905.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 812472..813569 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13905.t1.start1Gvermi13905.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 813567..813569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13905.t1Gvermi13905.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 812472..813569 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13905.t1 ID=Gvermi13905.t1|Name=Gvermi13905.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=366bp
MKLVELFLSATVSADDSDKPPSTFAVVFRKDGLEGDFHELGRTETIPHAA
HLQFFSSFELSYNEKWPDEAVLRFELYNRSTVDTEKLREHCLVGKATVCL
PDLILAPGNHLTTHFSHACLEKKVGVLTVSAEHIDATHADNQSHVLLDLS
SCVLRKRDWNKTLLHQRYELSRAHKYEDMEGHTVWLPIHKSDRIARQRDS
NTTIEFSAANLKYRHLCNGDDERRLRIRLYAAASTAKRAASEVLLGTVHF
CLRDICEMDPTGEVLALEGGGGGGGGGAHEDIGHVCILHAEPTDYGSHFA
MHLNVDNCEKYAVGGSHEKRKLVQKTKKRLSMSKLSIGKGKSSPGGTKLP
AINSIENLFKQQSTR*
back to top

spliced messenger RNA

>Gvermi13905.t1 ID=Gvermi13905.t1|Name=Gvermi13905.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at ScGOVlb_647:812472..813569- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTTGTCGAGCTCTTCCTGTCTGCGACCGTCAGTGCGGACGATTC
GGACAAGCCGCCTTCCACCTTTGCCGTTGTTTTTCGCAAGGATGGCCTCG
AAGGCGACTTCCACGAACTGGGCAGGACCGAGACCATACCGCACGCCGCC
CACCTGCAGTTCTTCTCTTCGTTCGAGCTGTCATACAATGAAAAGTGGCC
GGACGAGGCCGTATTGCGCTTCGAGCTGTACAACAGAAGCACCGTCGACA
CGGAGAAGTTGCGTGAGCACTGCCTGGTGGGGAAGGCCACCGTGTGCCTC
CCGGACCTCATCCTGGCGCCTGGCAACCATCTGACCACGCACTTTTCACA
CGCTTGCTTGGAGAAGAAGGTGGGCGTGCTCACCGTGAGCGCCGAGCACA
TCGACGCCACCCACGCCGACAATCAGTCGCATGTGCTTCTGGACCTCTCC
TCGTGCGTGCTGAGGAAGAGGGATTGGAACAAAACGCTGCTTCACCAGCG
GTACGAGCTCAGCAGAGCGCACAAGTACGAGGACATGGAGGGCCACACCG
TGTGGCTGCCCATTCACAAGAGCGATCGCATTGCAAGGCAGAGAGACTCA
AACACCACCATTGAGTTCAGCGCGGCCAACCTCAAGTACCGCCACCTGTG
CAACGGAGACGACGAACGGAGGCTGAGAATCCGCCTGTACGCCGCCGCGT
CCACGGCCAAGCGTGCGGCGAGCGAGGTGCTGCTGGGAACGGTGCACTTC
TGCTTGCGGGACATATGCGAAATGGACCCTACGGGCGAAGTGCTGGCGCT
CGAAGGCGGCGGCGGCGGCGGCGGCGGCGGCGCGCACGAGGACATTGGGC
ACGTGTGCATCCTTCATGCCGAGCCCACCGACTACGGAAGCCATTTCGCG
ATGCACTTGAATGTGGACAACTGCGAAAAGTACGCGGTGGGCGGGTCGCA
CGAGAAGAGGAAGCTGGTGCAAAAGACGAAAAAGCGGCTGTCCATGTCCA
AGTTGTCGATCGGCAAGGGCAAATCCAGTCCTGGCGGCACGAAGCTTCCG
GCCATCAATTCAATAGAGAATCTGTTCAAACAGCAGTCGACGCGGTGA
back to top

protein sequence of Gvermi13905.t1

>Gvermi13905.t1 ID=Gvermi13905.t1|Name=Gvermi13905.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=366bp
MKLVELFLSATVSADDSDKPPSTFAVVFRKDGLEGDFHELGRTETIPHAA
HLQFFSSFELSYNEKWPDEAVLRFELYNRSTVDTEKLREHCLVGKATVCL
PDLILAPGNHLTTHFSHACLEKKVGVLTVSAEHIDATHADNQSHVLLDLS
SCVLRKRDWNKTLLHQRYELSRAHKYEDMEGHTVWLPIHKSDRIARQRDS
NTTIEFSAANLKYRHLCNGDDERRLRIRLYAAASTAKRAASEVLLGTVHF
CLRDICEMDPTGEVLALEGGGGGGGGGAHEDIGHVCILHAEPTDYGSHFA
MHLNVDNCEKYAVGGSHEKRKLVQKTKKRLSMSKLSIGKGKSSPGGTKLP
AINSIENLFKQQSTR*
back to top

mRNA from alignment at ScGOVlb_647:812472..813569-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13905.t1 ID=Gvermi13905.t1|Name=Gvermi13905.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at ScGOVlb_647:812472..813569- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGCTTGTCGAGCTCTTCCTGTCTGCGACCGTCAGTGCGGACGATTC
GGACAAGCCGCCTTCCACCTTTGCCGTTGTTTTTCGCAAGGATGGCCTCG
AAGGCGACTTCCACGAACTGGGCAGGACCGAGACCATACCGCACGCCGCC
CACCTGCAGTTCTTCTCTTCGTTCGAGCTGTCATACAATGAAAAGTGGCC
GGACGAGGCCGTATTGCGCTTCGAGCTGTACAACAGAAGCACCGTCGACA
CGGAGAAGTTGCGTGAGCACTGCCTGGTGGGGAAGGCCACCGTGTGCCTC
CCGGACCTCATCCTGGCGCCTGGCAACCATCTGACCACGCACTTTTCACA
CGCTTGCTTGGAGAAGAAGGTGGGCGTGCTCACCGTGAGCGCCGAGCACA
TCGACGCCACCCACGCCGACAATCAGTCGCATGTGCTTCTGGACCTCTCC
TCGTGCGTGCTGAGGAAGAGGGATTGGAACAAAACGCTGCTTCACCAGCG
GTACGAGCTCAGCAGAGCGCACAAGTACGAGGACATGGAGGGCCACACCG
TGTGGCTGCCCATTCACAAGAGCGATCGCATTGCAAGGCAGAGAGACTCA
AACACCACCATTGAGTTCAGCGCGGCCAACCTCAAGTACCGCCACCTGTG
CAACGGAGACGACGAACGGAGGCTGAGAATCCGCCTGTACGCCGCCGCGT
CCACGGCCAAGCGTGCGGCGAGCGAGGTGCTGCTGGGAACGGTGCACTTC
TGCTTGCGGGACATATGCGAAATGGACCCTACGGGCGAAGTGCTGGCGCT
CGAAGGCGGCGGCGGCGGCGGCGGCGGCGGCGCGCACGAGGACATTGGGC
ACGTGTGCATCCTTCATGCCGAGCCCACCGACTACGGAAGCCATTTCGCG
ATGCACTTGAATGTGGACAACTGCGAAAAGTACGCGGTGGGCGGGTCGCA
CGAGAAGAGGAAGCTGGTGCAAAAGACGAAAAAGCGGCTGTCCATGTCCA
AGTTGTCGATCGGCAAGGGCAAATCCAGTCCTGGCGGCACGAAGCTTCCG
GCCATCAATTCAATAGAGAATCTGTTCAAACAGCAGTCGACGCGGTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_647:812472..813569-

>Gvermi13905.t1 ID=Gvermi13905.t1|Name=Gvermi13905.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1098bp|location=Sequence derived from alignment at ScGOVlb_647:812472..813569- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGCTTGTCGAGCTCTTCCTGTCTGCGACCGTCAGTGCGGACGATTC
GGACAAGCCGCCTTCCACCTTTGCCGTTGTTTTTCGCAAGGATGGCCTCG
AAGGCGACTTCCACGAACTGGGCAGGACCGAGACCATACCGCACGCCGCC
CACCTGCAGTTCTTCTCTTCGTTCGAGCTGTCATACAATGAAAAGTGGCC
GGACGAGGCCGTATTGCGCTTCGAGCTGTACAACAGAAGCACCGTCGACA
CGGAGAAGTTGCGTGAGCACTGCCTGGTGGGGAAGGCCACCGTGTGCCTC
CCGGACCTCATCCTGGCGCCTGGCAACCATCTGACCACGCACTTTTCACA
CGCTTGCTTGGAGAAGAAGGTGGGCGTGCTCACCGTGAGCGCCGAGCACA
TCGACGCCACCCACGCCGACAATCAGTCGCATGTGCTTCTGGACCTCTCC
TCGTGCGTGCTGAGGAAGAGGGATTGGAACAAAACGCTGCTTCACCAGCG
GTACGAGCTCAGCAGAGCGCACAAGTACGAGGACATGGAGGGCCACACCG
TGTGGCTGCCCATTCACAAGAGCGATCGCATTGCAAGGCAGAGAGACTCA
AACACCACCATTGAGTTCAGCGCGGCCAACCTCAAGTACCGCCACCTGTG
CAACGGAGACGACGAACGGAGGCTGAGAATCCGCCTGTACGCCGCCGCGT
CCACGGCCAAGCGTGCGGCGAGCGAGGTGCTGCTGGGAACGGTGCACTTC
TGCTTGCGGGACATATGCGAAATGGACCCTACGGGCGAAGTGCTGGCGCT
CGAAGGCGGCGGCGGCGGCGGCGGCGGCGGCGCGCACGAGGACATTGGGC
ACGTGTGCATCCTTCATGCCGAGCCCACCGACTACGGAAGCCATTTCGCG
ATGCACTTGAATGTGGACAACTGCGAAAAGTACGCGGTGGGCGGGTCGCA
CGAGAAGAGGAAGCTGGTGCAAAAGACGAAAAAGCGGCTGTCCATGTCCA
AGTTGTCGATCGGCAAGGGCAAATCCAGTCCTGGCGGCACGAAGCTTCCG
GCCATCAATTCAATAGAGAATCTGTTCAAACAGCAGTCGACGCGGTGA
back to top