Gvermi13891.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13891.t1
Unique NameGvermi13891.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length258
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:658219..659135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703206.1
PFAMsadh_short,adh_short_C2
Max annot lvl2759|Eukaryota
KEGG rclassRC00029,RC00117
KEGG koko:K00059
KEGG ReactionR04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671
KEGG Pathwayko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212
KEGG ModuleM00083,M00572
Evalue3.38e-116
EggNOG OGsCOG1028@1|root,KOG0725@2759|Eukaryota
EC1.1.1.100
Descriptionoxidation-reduction process
COG categoryIQ
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13891Gvermi13891Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 658219..659135 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13891.t1Gvermi13891.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 658219..659135 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13891.t1.start1Gvermi13891.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 658219..658221 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13891.t1.CDS1Gvermi13891.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 658219..658266 +
Gvermi13891.t1.CDS2Gvermi13891.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 658410..659135 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13891.t1.exon1Gvermi13891.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 658219..658266 +
Gvermi13891.t1.exon2Gvermi13891.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 658410..659135 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13891.t1.intron1Gvermi13891.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_647 658267..658409 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13891.t1.stop1Gvermi13891.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 659133..659135 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13891.t1 ID=Gvermi13891.t1|Name=Gvermi13891.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=258bp
MSSFMRTYEPDMKTAMVTGSAGVLGQATVRMLLEEGFRVVIHDSDEHALS
ELLTALGPLVNETQCYPICFDPCNSDSIDRAIERINNDFHPVYVLVNNNG
ILARTPIAQTNIEAWRRCFSQNVDSAFLISRALLPNMRQRKWGRIVNTCS
IAGKTGGHTTGIAYSTTKGALQTFTFALARECAKDGITVNGIAPAYIRTP
GVEAYPKDMVKMLLEYIPVGRFCEPEEFAHTVKFLISPLAGFICGEIIDQ
NGGLLMS*
back to top

spliced messenger RNA

>Gvermi13891.t1 ID=Gvermi13891.t1|Name=Gvermi13891.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=774bp|location=Sequence derived from alignment at ScGOVlb_647:658219..659135+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAGCTTCATGCGCACCTACGAACCCGACATGAAGACCGCTATGGT
AACCGGTTCGGCGGGCGTCCTCGGTCAAGCCACGGTACGCATGCTGCTGG
AGGAGGGCTTTCGCGTCGTCATACACGACAGTGACGAGCACGCCCTTTCC
GAGCTTCTCACAGCCCTTGGCCCACTCGTCAATGAGACCCAGTGTTACCC
GATATGTTTCGATCCGTGCAACTCTGATTCCATTGACAGAGCGATAGAGA
GAATCAACAACGACTTCCACCCCGTGTATGTTCTTGTCAACAACAATGGT
ATTCTCGCCAGAACCCCAATCGCCCAAACGAACATTGAGGCGTGGCGACG
GTGCTTTTCGCAAAATGTGGACTCCGCCTTCCTTATCTCTCGCGCGCTGT
TGCCCAACATGCGGCAGCGGAAATGGGGTAGAATCGTCAATACTTGTTCC
ATTGCGGGAAAAACTGGCGGCCACACTACGGGAATCGCCTATTCCACCAC
AAAGGGTGCCCTTCAAACTTTCACATTCGCTCTCGCTCGCGAGTGTGCAA
AGGACGGAATCACTGTCAACGGCATTGCCCCTGCCTACATCCGCACACCT
GGTGTCGAGGCATATCCAAAGGACATGGTCAAGATGCTGTTGGAGTACAT
TCCGGTTGGTCGGTTTTGTGAGCCCGAAGAATTTGCTCACACAGTCAAAT
TTTTGATATCTCCTCTCGCGGGATTCATCTGCGGAGAAATCATAGATCAG
AACGGCGGATTGCTCATGAGCTAG
back to top

protein sequence of Gvermi13891.t1

>Gvermi13891.t1 ID=Gvermi13891.t1|Name=Gvermi13891.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=258bp
MSSFMRTYEPDMKTAMVTGSAGVLGQATVRMLLEEGFRVVIHDSDEHALS
ELLTALGPLVNETQCYPICFDPCNSDSIDRAIERINNDFHPVYVLVNNNG
ILARTPIAQTNIEAWRRCFSQNVDSAFLISRALLPNMRQRKWGRIVNTCS
IAGKTGGHTTGIAYSTTKGALQTFTFALARECAKDGITVNGIAPAYIRTP
GVEAYPKDMVKMLLEYIPVGRFCEPEEFAHTVKFLISPLAGFICGEIIDQ
NGGLLMS*
back to top

mRNA from alignment at ScGOVlb_647:658219..659135+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13891.t1 ID=Gvermi13891.t1|Name=Gvermi13891.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=917bp|location=Sequence derived from alignment at ScGOVlb_647:658219..659135+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCAGCTTCATGCGCACCTACGAACCCGACATGAAGACCGCTATGGT
ATGCTCCACTTCGACATTCCCATGTTTGCGCACCATGCATCATTTCTCGA
TTCAACACGAATCGTCTTTTGCTCCATTTTTTCATGCACTGACACTCCAC
GTCAACATCCCCTTCCCCTGTTCTCACCCATCCTTTTGCAGGTAACCGGT
TCGGCGGGCGTCCTCGGTCAAGCCACGGTACGCATGCTGCTGGAGGAGGG
CTTTCGCGTCGTCATACACGACAGTGACGAGCACGCCCTTTCCGAGCTTC
TCACAGCCCTTGGCCCACTCGTCAATGAGACCCAGTGTTACCCGATATGT
TTCGATCCGTGCAACTCTGATTCCATTGACAGAGCGATAGAGAGAATCAA
CAACGACTTCCACCCCGTGTATGTTCTTGTCAACAACAATGGTATTCTCG
CCAGAACCCCAATCGCCCAAACGAACATTGAGGCGTGGCGACGGTGCTTT
TCGCAAAATGTGGACTCCGCCTTCCTTATCTCTCGCGCGCTGTTGCCCAA
CATGCGGCAGCGGAAATGGGGTAGAATCGTCAATACTTGTTCCATTGCGG
GAAAAACTGGCGGCCACACTACGGGAATCGCCTATTCCACCACAAAGGGT
GCCCTTCAAACTTTCACATTCGCTCTCGCTCGCGAGTGTGCAAAGGACGG
AATCACTGTCAACGGCATTGCCCCTGCCTACATCCGCACACCTGGTGTCG
AGGCATATCCAAAGGACATGGTCAAGATGCTGTTGGAGTACATTCCGGTT
GGTCGGTTTTGTGAGCCCGAAGAATTTGCTCACACAGTCAAATTTTTGAT
ATCTCCTCTCGCGGGATTCATCTGCGGAGAAATCATAGATCAGAACGGCG
GATTGCTCATGAGCTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_647:658219..659135+

>Gvermi13891.t1 ID=Gvermi13891.t1|Name=Gvermi13891.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=774bp|location=Sequence derived from alignment at ScGOVlb_647:658219..659135+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCAGCTTCATGCGCACCTACGAACCCGACATGAAGACCGCTATGGT
AACCGGTTCGGCGGGCGTCCTCGGTCAAGCCACGGTACGCATGCTGCTGG
AGGAGGGCTTTCGCGTCGTCATACACGACAGTGACGAGCACGCCCTTTCC
GAGCTTCTCACAGCCCTTGGCCCACTCGTCAATGAGACCCAGTGTTACCC
GATATGTTTCGATCCGTGCAACTCTGATTCCATTGACAGAGCGATAGAGA
GAATCAACAACGACTTCCACCCCGTGTATGTTCTTGTCAACAACAATGGT
ATTCTCGCCAGAACCCCAATCGCCCAAACGAACATTGAGGCGTGGCGACG
GTGCTTTTCGCAAAATGTGGACTCCGCCTTCCTTATCTCTCGCGCGCTGT
TGCCCAACATGCGGCAGCGGAAATGGGGTAGAATCGTCAATACTTGTTCC
ATTGCGGGAAAAACTGGCGGCCACACTACGGGAATCGCCTATTCCACCAC
AAAGGGTGCCCTTCAAACTTTCACATTCGCTCTCGCTCGCGAGTGTGCAA
AGGACGGAATCACTGTCAACGGCATTGCCCCTGCCTACATCCGCACACCT
GGTGTCGAGGCATATCCAAAGGACATGGTCAAGATGCTGTTGGAGTACAT
TCCGGTTGGTCGGTTTTGTGAGCCCGAAGAATTTGCTCACACAGTCAAAT
TTTTGATATCTCCTCTCGCGGGATTCATCTGCGGAGAAATCATAGATCAG
AACGGCGGATTGCTCATGAGCTAG
back to top