Gvermi13890.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13890.t1
Unique NameGvermi13890.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length187
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:656664..657224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703205.1
PFAMsRieske
Max annot lvl2759|Eukaryota
Evalue3.46e-69
EggNOG OGsCOG2146@1|root,2S5ES@2759|Eukaryota
DescriptionRieske-like [2Fe-2S] domain
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13890Gvermi13890Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 656664..657224 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13890.t1.start1Gvermi13890.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 656664..656666 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13890.t1.CDS1Gvermi13890.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 656664..657224 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13890.t1.exon1Gvermi13890.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 656664..657224 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13890.t1.stop1Gvermi13890.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 657222..657224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13890.t1Gvermi13890.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 656664..657224 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13890.t1 ID=Gvermi13890.t1|Name=Gvermi13890.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=187bp
MSAFVPTTSFKGVQLTTATSNKAVCSRRRAAPARVAPSMKQEAWVPLLET
SEIVPGELKGVVVAGQQILVSCDYDGQVYASANICPHLGTPLTDGSIGDG
VLTCTQHKSSWDLTSGELAGDWCPFPPVIGPLLGKLQGPRPLTVYAVREN
SGQIEALLDVDAKSDYEKDYWQGVLDATGKATGGYY*
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spliced messenger RNA

>Gvermi13890.t1 ID=Gvermi13890.t1|Name=Gvermi13890.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=561bp|location=Sequence derived from alignment at ScGOVlb_647:656664..657224+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCATTTGTGCCCACCACTTCGTTCAAGGGCGTGCAGCTCACAAC
AGCCACCTCCAACAAGGCCGTCTGCTCCCGGCGCCGCGCCGCACCCGCGC
GTGTGGCGCCGTCCATGAAGCAGGAGGCGTGGGTGCCGCTTTTGGAGACC
TCGGAAATCGTACCCGGCGAGCTCAAGGGTGTGGTTGTCGCGGGGCAGCA
GATCCTGGTATCATGCGACTACGACGGTCAAGTGTACGCCTCGGCCAACA
TCTGCCCCCACCTAGGAACCCCTCTCACCGACGGCAGCATCGGCGACGGC
GTACTGACCTGCACGCAGCACAAGTCGTCATGGGACCTGACGAGCGGTGA
ATTGGCGGGCGATTGGTGCCCGTTCCCCCCAGTCATCGGCCCACTCCTCG
GCAAATTGCAAGGCCCTCGCCCGCTGACCGTGTACGCCGTTCGTGAAAAC
TCTGGACAAATCGAGGCGCTTCTTGATGTCGACGCCAAGTCCGACTACGA
GAAGGACTACTGGCAAGGCGTTTTGGACGCCACGGGCAAGGCCACCGGCG
GATACTATTAG
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protein sequence of Gvermi13890.t1

>Gvermi13890.t1 ID=Gvermi13890.t1|Name=Gvermi13890.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=187bp
MSAFVPTTSFKGVQLTTATSNKAVCSRRRAAPARVAPSMKQEAWVPLLET
SEIVPGELKGVVVAGQQILVSCDYDGQVYASANICPHLGTPLTDGSIGDG
VLTCTQHKSSWDLTSGELAGDWCPFPPVIGPLLGKLQGPRPLTVYAVREN
SGQIEALLDVDAKSDYEKDYWQGVLDATGKATGGYY*
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mRNA from alignment at ScGOVlb_647:656664..657224+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13890.t1 ID=Gvermi13890.t1|Name=Gvermi13890.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=561bp|location=Sequence derived from alignment at ScGOVlb_647:656664..657224+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCGCATTTGTGCCCACCACTTCGTTCAAGGGCGTGCAGCTCACAAC
AGCCACCTCCAACAAGGCCGTCTGCTCCCGGCGCCGCGCCGCACCCGCGC
GTGTGGCGCCGTCCATGAAGCAGGAGGCGTGGGTGCCGCTTTTGGAGACC
TCGGAAATCGTACCCGGCGAGCTCAAGGGTGTGGTTGTCGCGGGGCAGCA
GATCCTGGTATCATGCGACTACGACGGTCAAGTGTACGCCTCGGCCAACA
TCTGCCCCCACCTAGGAACCCCTCTCACCGACGGCAGCATCGGCGACGGC
GTACTGACCTGCACGCAGCACAAGTCGTCATGGGACCTGACGAGCGGTGA
ATTGGCGGGCGATTGGTGCCCGTTCCCCCCAGTCATCGGCCCACTCCTCG
GCAAATTGCAAGGCCCTCGCCCGCTGACCGTGTACGCCGTTCGTGAAAAC
TCTGGACAAATCGAGGCGCTTCTTGATGTCGACGCCAAGTCCGACTACGA
GAAGGACTACTGGCAAGGCGTTTTGGACGCCACGGGCAAGGCCACCGGCG
GATACTATTAG
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Coding sequence (CDS) from alignment at ScGOVlb_647:656664..657224+

>Gvermi13890.t1 ID=Gvermi13890.t1|Name=Gvermi13890.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=561bp|location=Sequence derived from alignment at ScGOVlb_647:656664..657224+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCGCATTTGTGCCCACCACTTCGTTCAAGGGCGTGCAGCTCACAAC
AGCCACCTCCAACAAGGCCGTCTGCTCCCGGCGCCGCGCCGCACCCGCGC
GTGTGGCGCCGTCCATGAAGCAGGAGGCGTGGGTGCCGCTTTTGGAGACC
TCGGAAATCGTACCCGGCGAGCTCAAGGGTGTGGTTGTCGCGGGGCAGCA
GATCCTGGTATCATGCGACTACGACGGTCAAGTGTACGCCTCGGCCAACA
TCTGCCCCCACCTAGGAACCCCTCTCACCGACGGCAGCATCGGCGACGGC
GTACTGACCTGCACGCAGCACAAGTCGTCATGGGACCTGACGAGCGGTGA
ATTGGCGGGCGATTGGTGCCCGTTCCCCCCAGTCATCGGCCCACTCCTCG
GCAAATTGCAAGGCCCTCGCCCGCTGACCGTGTACGCCGTTCGTGAAAAC
TCTGGACAAATCGAGGCGCTTCTTGATGTCGACGCCAAGTCCGACTACGA
GAAGGACTACTGGCAAGGCGTTTTGGACGCCACGGGCAAGGCCACCGGCG
GATACTATTAG
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