Gvermi13885.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13885.t1
Unique NameGvermi13885.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length294
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:644772..645653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog325452.fgenesh_scip_prom.46568.2021
PFAMsC2,Copine
Max annot lvl4776|Peronosporales
Evalue1.98e-09
EggNOG OGsKOG1327@1|root,KOG1327@2759|Eukaryota,3QEJ6@4776|Peronosporales
DescriptionCopine
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13885Gvermi13885Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 644772..645653 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13885.t1.stop1Gvermi13885.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 644772..644774 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13885.t1.CDS1Gvermi13885.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 644772..645653 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13885.t1.exon1Gvermi13885.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 644772..645653 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13885.t1.start1Gvermi13885.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 645651..645653 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13885.t1Gvermi13885.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 644772..645653 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13885.t1 ID=Gvermi13885.t1|Name=Gvermi13885.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=294bp
MEASTFRYYELKIAAKRLPGRLRIDPIAVVFTKHVSSSEWSELGRTEKRL
NEWNPKFATPVVLPADNENQRRVDLKIDFYHKEVKDVRFLGAAEVNIYSL
IFAKGQPVELELKTPEAARGSPRVFLTALEGFRTESEASSVKLSFQLMQT
NFYGVGMRVFYEISRAGEGTWHPVFKSSHILLDQQGWGQFPTHEITMRDL
SMDVESAGLLISLYRYRRIGTRKLLGHFQTSVKELTRKSVGDFISFAANP
NEDILSADVQVLHAQKNGLLYEFGLKLINVQWNATNLLEDKVR*
back to top

spliced messenger RNA

>Gvermi13885.t1 ID=Gvermi13885.t1|Name=Gvermi13885.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=882bp|location=Sequence derived from alignment at ScGOVlb_647:644772..645653- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGCTTCCACGTTTCGGTACTACGAACTCAAAATCGCTGCAAAGCG
CCTGCCAGGCCGTTTGCGGATTGACCCTATTGCCGTGGTCTTTACGAAAC
ATGTCTCATCTTCGGAATGGTCCGAACTAGGGCGCACTGAAAAGAGGTTG
AACGAGTGGAATCCTAAATTTGCCACTCCCGTTGTGCTACCCGCTGACAA
CGAAAATCAGCGTCGAGTTGATCTCAAAATCGACTTTTACCACAAAGAAG
TAAAAGATGTCCGATTCTTGGGTGCAGCTGAAGTTAACATATACTCTCTC
ATCTTCGCCAAGGGCCAGCCAGTCGAACTCGAACTAAAGACTCCGGAAGC
AGCAAGGGGAAGCCCGCGCGTGTTCCTCACAGCCTTGGAAGGGTTTCGAA
CAGAATCAGAGGCATCTTCAGTGAAGCTTAGCTTCCAGCTTATGCAAACC
AACTTCTATGGAGTTGGCATGCGAGTCTTTTACGAAATCTCCAGGGCAGG
GGAAGGAACATGGCACCCGGTTTTCAAAAGCTCTCATATACTACTTGACC
AACAGGGATGGGGCCAGTTCCCCACCCATGAAATTACTATGCGTGACCTT
TCAATGGACGTCGAAAGCGCGGGCTTACTTATCAGCCTCTACCGCTATCG
ACGAATCGGAACGCGCAAGCTGCTCGGTCACTTCCAGACATCTGTCAAGG
AGTTGACGAGGAAGAGTGTCGGTGATTTCATTTCATTCGCAGCAAATCCA
AACGAAGACATTTTGTCCGCAGATGTGCAGGTTCTACATGCGCAGAAAAA
TGGCCTCCTGTATGAATTCGGCCTAAAGCTTATCAATGTTCAGTGGAATG
CCACGAATCTTTTGGAAGACAAGGTCAGGTAG
back to top

protein sequence of Gvermi13885.t1

>Gvermi13885.t1 ID=Gvermi13885.t1|Name=Gvermi13885.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=294bp
MEASTFRYYELKIAAKRLPGRLRIDPIAVVFTKHVSSSEWSELGRTEKRL
NEWNPKFATPVVLPADNENQRRVDLKIDFYHKEVKDVRFLGAAEVNIYSL
IFAKGQPVELELKTPEAARGSPRVFLTALEGFRTESEASSVKLSFQLMQT
NFYGVGMRVFYEISRAGEGTWHPVFKSSHILLDQQGWGQFPTHEITMRDL
SMDVESAGLLISLYRYRRIGTRKLLGHFQTSVKELTRKSVGDFISFAANP
NEDILSADVQVLHAQKNGLLYEFGLKLINVQWNATNLLEDKVR*
back to top

mRNA from alignment at ScGOVlb_647:644772..645653-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13885.t1 ID=Gvermi13885.t1|Name=Gvermi13885.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=882bp|location=Sequence derived from alignment at ScGOVlb_647:644772..645653- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGGCTTCCACGTTTCGGTACTACGAACTCAAAATCGCTGCAAAGCG
CCTGCCAGGCCGTTTGCGGATTGACCCTATTGCCGTGGTCTTTACGAAAC
ATGTCTCATCTTCGGAATGGTCCGAACTAGGGCGCACTGAAAAGAGGTTG
AACGAGTGGAATCCTAAATTTGCCACTCCCGTTGTGCTACCCGCTGACAA
CGAAAATCAGCGTCGAGTTGATCTCAAAATCGACTTTTACCACAAAGAAG
TAAAAGATGTCCGATTCTTGGGTGCAGCTGAAGTTAACATATACTCTCTC
ATCTTCGCCAAGGGCCAGCCAGTCGAACTCGAACTAAAGACTCCGGAAGC
AGCAAGGGGAAGCCCGCGCGTGTTCCTCACAGCCTTGGAAGGGTTTCGAA
CAGAATCAGAGGCATCTTCAGTGAAGCTTAGCTTCCAGCTTATGCAAACC
AACTTCTATGGAGTTGGCATGCGAGTCTTTTACGAAATCTCCAGGGCAGG
GGAAGGAACATGGCACCCGGTTTTCAAAAGCTCTCATATACTACTTGACC
AACAGGGATGGGGCCAGTTCCCCACCCATGAAATTACTATGCGTGACCTT
TCAATGGACGTCGAAAGCGCGGGCTTACTTATCAGCCTCTACCGCTATCG
ACGAATCGGAACGCGCAAGCTGCTCGGTCACTTCCAGACATCTGTCAAGG
AGTTGACGAGGAAGAGTGTCGGTGATTTCATTTCATTCGCAGCAAATCCA
AACGAAGACATTTTGTCCGCAGATGTGCAGGTTCTACATGCGCAGAAAAA
TGGCCTCCTGTATGAATTCGGCCTAAAGCTTATCAATGTTCAGTGGAATG
CCACGAATCTTTTGGAAGACAAGGTCAGGTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_647:644772..645653-

>Gvermi13885.t1 ID=Gvermi13885.t1|Name=Gvermi13885.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=882bp|location=Sequence derived from alignment at ScGOVlb_647:644772..645653- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGGCTTCCACGTTTCGGTACTACGAACTCAAAATCGCTGCAAAGCG
CCTGCCAGGCCGTTTGCGGATTGACCCTATTGCCGTGGTCTTTACGAAAC
ATGTCTCATCTTCGGAATGGTCCGAACTAGGGCGCACTGAAAAGAGGTTG
AACGAGTGGAATCCTAAATTTGCCACTCCCGTTGTGCTACCCGCTGACAA
CGAAAATCAGCGTCGAGTTGATCTCAAAATCGACTTTTACCACAAAGAAG
TAAAAGATGTCCGATTCTTGGGTGCAGCTGAAGTTAACATATACTCTCTC
ATCTTCGCCAAGGGCCAGCCAGTCGAACTCGAACTAAAGACTCCGGAAGC
AGCAAGGGGAAGCCCGCGCGTGTTCCTCACAGCCTTGGAAGGGTTTCGAA
CAGAATCAGAGGCATCTTCAGTGAAGCTTAGCTTCCAGCTTATGCAAACC
AACTTCTATGGAGTTGGCATGCGAGTCTTTTACGAAATCTCCAGGGCAGG
GGAAGGAACATGGCACCCGGTTTTCAAAAGCTCTCATATACTACTTGACC
AACAGGGATGGGGCCAGTTCCCCACCCATGAAATTACTATGCGTGACCTT
TCAATGGACGTCGAAAGCGCGGGCTTACTTATCAGCCTCTACCGCTATCG
ACGAATCGGAACGCGCAAGCTGCTCGGTCACTTCCAGACATCTGTCAAGG
AGTTGACGAGGAAGAGTGTCGGTGATTTCATTTCATTCGCAGCAAATCCA
AACGAAGACATTTTGTCCGCAGATGTGCAGGTTCTACATGCGCAGAAAAA
TGGCCTCCTGTATGAATTCGGCCTAAAGCTTATCAATGTTCAGTGGAATG
CCACGAATCTTTTGGAAGACAAGGTCAGGTAG
back to top