Gvermi13879.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13879.t1
Unique NameGvermi13879.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length157
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:635358..635915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13879Gvermi13879Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 635358..635915 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13879.t1Gvermi13879.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 635358..635915 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13879.t1.stop1Gvermi13879.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 635358..635360 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13879.t1.CDS1Gvermi13879.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 635358..635669 -
Gvermi13879.t1.CDS2Gvermi13879.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 635757..635915 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13879.t1.exon1Gvermi13879.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 635358..635669 -
Gvermi13879.t1.exon2Gvermi13879.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 635757..635915 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13879.t1.intron1Gvermi13879.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_647 635670..635756 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13879.t1.start1Gvermi13879.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 635913..635915 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13879.t1 ID=Gvermi13879.t1|Name=Gvermi13879.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=157bp
MGGRREANKKAKTHWLTMLAAEEKLRLATAVRSQRRERRRQIRREDASLA
DALNAVSVGTEARNNAPTVGAPLRLTKDVDMKSVKVARPRIRKRCKKCQQ
RLNKIRARMAKRISTKMNIDFETKRHSELNAAAATSAPEVKTTINTAAAA
TAAMPM*
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spliced messenger RNA

>Gvermi13879.t1 ID=Gvermi13879.t1|Name=Gvermi13879.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=471bp|location=Sequence derived from alignment at ScGOVlb_647:635358..635915- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGGTCGCCGAGAAGCAAACAAAAAGGCAAAGACGCACTGGCTCAC
AATGCTAGCCGCGGAAGAGAAGCTACGTCTGGCCACCGCTGTGCGTTCGC
AGAGGCGCGAACGTCGCCGCCAAATCCGCCGGGAAGACGCCAGTCTAGCT
GACGCCTTGAACGCCGTATCGGTAGGAACCGAAGCACGAAACAACGCACC
CACAGTTGGCGCCCCACTGAGGCTGACAAAGGACGTTGACATGAAGTCTG
TCAAAGTGGCGCGTCCACGAATCCGCAAACGGTGCAAGAAATGCCAACAA
CGTCTCAACAAGATTCGCGCAAGAATGGCGAAGAGAATTAGCACCAAAAT
GAACATCGATTTCGAAACTAAGCGCCACAGCGAACTGAACGCCGCTGCCG
CCACGTCCGCCCCTGAGGTTAAAACTACCATTAACACAGCGGCTGCCGCA
ACCGCCGCCATGCCAATGTAA
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protein sequence of Gvermi13879.t1

>Gvermi13879.t1 ID=Gvermi13879.t1|Name=Gvermi13879.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=157bp
MGGRREANKKAKTHWLTMLAAEEKLRLATAVRSQRRERRRQIRREDASLA
DALNAVSVGTEARNNAPTVGAPLRLTKDVDMKSVKVARPRIRKRCKKCQQ
RLNKIRARMAKRISTKMNIDFETKRHSELNAAAATSAPEVKTTINTAAAA
TAAMPM*
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mRNA from alignment at ScGOVlb_647:635358..635915-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13879.t1 ID=Gvermi13879.t1|Name=Gvermi13879.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=558bp|location=Sequence derived from alignment at ScGOVlb_647:635358..635915- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTGGTCGCCGAGAAGCAAACAAAAAGGCAAAGACGCACTGGCTCAC
AATGCTAGCCGCGGAAGAGAAGCTACGTCTGGCCACCGCTGTGCGTTCGC
AGAGGCGCGAACGTCGCCGCCAAATCCGCCGGGAAGACGCCAGTCTAGCT
GACGCCTTGGTAAGTTGACGCTGATCCGCACCCCAATATACCTCTTTCTC
CCAGTCGCACAACATACTCGTTGCTGACCGCACAATGACCGTGCAGAACG
CCGTATCGGTAGGAACCGAAGCACGAAACAACGCACCCACAGTTGGCGCC
CCACTGAGGCTGACAAAGGACGTTGACATGAAGTCTGTCAAAGTGGCGCG
TCCACGAATCCGCAAACGGTGCAAGAAATGCCAACAACGTCTCAACAAGA
TTCGCGCAAGAATGGCGAAGAGAATTAGCACCAAAATGAACATCGATTTC
GAAACTAAGCGCCACAGCGAACTGAACGCCGCTGCCGCCACGTCCGCCCC
TGAGGTTAAAACTACCATTAACACAGCGGCTGCCGCAACCGCCGCCATGC
CAATGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_647:635358..635915-

>Gvermi13879.t1 ID=Gvermi13879.t1|Name=Gvermi13879.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=471bp|location=Sequence derived from alignment at ScGOVlb_647:635358..635915- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTGGTCGCCGAGAAGCAAACAAAAAGGCAAAGACGCACTGGCTCAC
AATGCTAGCCGCGGAAGAGAAGCTACGTCTGGCCACCGCTGTGCGTTCGC
AGAGGCGCGAACGTCGCCGCCAAATCCGCCGGGAAGACGCCAGTCTAGCT
GACGCCTTGAACGCCGTATCGGTAGGAACCGAAGCACGAAACAACGCACC
CACAGTTGGCGCCCCACTGAGGCTGACAAAGGACGTTGACATGAAGTCTG
TCAAAGTGGCGCGTCCACGAATCCGCAAACGGTGCAAGAAATGCCAACAA
CGTCTCAACAAGATTCGCGCAAGAATGGCGAAGAGAATTAGCACCAAAAT
GAACATCGATTTCGAAACTAAGCGCCACAGCGAACTGAACGCCGCTGCCG
CCACGTCCGCCCCTGAGGTTAAAACTACCATTAACACAGCGGCTGCCGCA
ACCGCCGCCATGCCAATGTAA
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