Gvermi13874.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13874.t1
Unique NameGvermi13874.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length378
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:517020..518153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705365.1
Preferred nameMETAP1
PFAMsPeptidase_M24,zf-C6H2
Max annot lvl2759|Eukaryota
KEGG koko:K01265
GOsGO:0003674,GO:0003824,GO:0004177,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006417,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0008277,GO:0009889,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0010646,GO:0016787,GO:0018193,GO:0018206,GO:0019222,GO:0019538,GO:0022400,GO:0023051,GO:0031323,GO:0031326,GO:0031365,GO:0032101,GO:0032268,GO:0034248,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:2000112
Evalue6.77e-152
EggNOG OGsCOG0024@1|root,KOG2738@2759|Eukaryota
EC3.4.11.18
Descriptionmetalloexopeptidase activity
COG categoryE
BRITEko00000,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13874Gvermi13874Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 517020..518153 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13874.t1.stop1Gvermi13874.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 517020..517022 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13874.t1.CDS1Gvermi13874.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 517020..518153 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13874.t1.exon1Gvermi13874.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 517020..518153 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13874.t1.start1Gvermi13874.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 518151..518153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13874.t1Gvermi13874.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 517020..518153 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13874.t1 ID=Gvermi13874.t1|Name=Gvermi13874.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=378bp
MLCASANCHKAASLRCPTCVKLEMDVVSDSYFCTQECFRASWASHKQLHK
GSPLPRGVDPSGRRRRAAFDQYRYTGELRAAHVVLPQRAVPAAIARPDYA
ADGIPRGEERFNRSSARLSVLDAQGVAAMRTVCRLAREVLDIAVRAAGVG
VSTEHIDQVVHAACVERGAYPSPLNYYGFPKSCCTSVNEVICHGIPDKRA
LQDGDIVNIDITLYHGGFHGDVNETVCIGNVQPQHKALIRSAHDAMWAAV
RRVKPGVLFREFGAHIERVARANGHSVVRSYCGHGIGEHFHTAPNVAHYR
KNRAVGMCKAGMCFTIEPMLNGGSWRDELWPDNWTAVTADGSRSAQFEHT
VLVTDDGCEVLTARVDGGPSMWWELGG*
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spliced messenger RNA

>Gvermi13874.t1 ID=Gvermi13874.t1|Name=Gvermi13874.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1134bp|location=Sequence derived from alignment at ScGOVlb_647:517020..518153- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTGCGCGTCCGCAAACTGCCACAAGGCGGCCAGCCTGCGGTGCCC
CACGTGCGTCAAGCTGGAAATGGACGTGGTGTCCGACAGCTACTTCTGCA
CGCAGGAGTGCTTCCGCGCGTCGTGGGCGTCGCACAAGCAGCTGCACAAG
GGCTCGCCGCTGCCGCGCGGCGTGGACCCGTCCGGCCGGCGGCGGCGCGC
CGCGTTCGACCAGTACCGGTACACGGGCGAGCTGCGCGCGGCGCACGTGG
TGCTGCCGCAGCGCGCGGTGCCGGCGGCCATTGCGCGCCCCGACTACGCC
GCCGACGGCATCCCGCGCGGCGAGGAGCGCTTCAACCGCAGCAGCGCGAG
GCTGAGCGTGCTGGACGCGCAGGGCGTGGCGGCGATGCGCACGGTGTGCC
GGCTGGCGCGCGAGGTGCTGGACATTGCCGTGCGCGCGGCCGGCGTGGGC
GTGAGCACCGAGCACATCGACCAGGTGGTGCACGCGGCGTGCGTGGAGCG
CGGCGCGTACCCCAGCCCGCTCAACTACTACGGCTTCCCCAAGTCGTGCT
GCACCAGCGTGAACGAGGTGATCTGCCACGGCATCCCGGACAAGCGCGCG
CTGCAGGACGGCGACATTGTGAACATCGACATCACGCTGTACCACGGCGG
CTTCCACGGCGACGTGAACGAGACGGTGTGCATCGGCAACGTGCAGCCGC
AGCACAAGGCGCTGATCCGCAGCGCGCACGACGCCATGTGGGCGGCGGTG
AGGCGCGTCAAGCCCGGCGTGCTGTTCCGCGAGTTTGGGGCGCACATCGA
GCGCGTGGCGCGCGCCAACGGCCACTCGGTGGTGCGCAGCTACTGCGGGC
ACGGCATTGGCGAGCACTTCCACACGGCGCCCAACGTGGCGCACTACCGC
AAGAACCGCGCGGTGGGCATGTGCAAGGCGGGCATGTGCTTCACGATCGA
GCCCATGCTGAACGGCGGGTCGTGGCGCGACGAGCTGTGGCCGGACAACT
GGACGGCGGTGACGGCCGACGGCAGCCGGTCGGCGCAGTTCGAGCACACG
GTGCTGGTGACGGACGACGGGTGCGAGGTGCTGACGGCGCGCGTGGACGG
CGGGCCCAGCATGTGGTGGGAGCTGGGCGGCTGA
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protein sequence of Gvermi13874.t1

>Gvermi13874.t1 ID=Gvermi13874.t1|Name=Gvermi13874.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=378bp
MLCASANCHKAASLRCPTCVKLEMDVVSDSYFCTQECFRASWASHKQLHK
GSPLPRGVDPSGRRRRAAFDQYRYTGELRAAHVVLPQRAVPAAIARPDYA
ADGIPRGEERFNRSSARLSVLDAQGVAAMRTVCRLAREVLDIAVRAAGVG
VSTEHIDQVVHAACVERGAYPSPLNYYGFPKSCCTSVNEVICHGIPDKRA
LQDGDIVNIDITLYHGGFHGDVNETVCIGNVQPQHKALIRSAHDAMWAAV
RRVKPGVLFREFGAHIERVARANGHSVVRSYCGHGIGEHFHTAPNVAHYR
KNRAVGMCKAGMCFTIEPMLNGGSWRDELWPDNWTAVTADGSRSAQFEHT
VLVTDDGCEVLTARVDGGPSMWWELGG*
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mRNA from alignment at ScGOVlb_647:517020..518153-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13874.t1 ID=Gvermi13874.t1|Name=Gvermi13874.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1134bp|location=Sequence derived from alignment at ScGOVlb_647:517020..518153- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTGTGCGCGTCCGCAAACTGCCACAAGGCGGCCAGCCTGCGGTGCCC
CACGTGCGTCAAGCTGGAAATGGACGTGGTGTCCGACAGCTACTTCTGCA
CGCAGGAGTGCTTCCGCGCGTCGTGGGCGTCGCACAAGCAGCTGCACAAG
GGCTCGCCGCTGCCGCGCGGCGTGGACCCGTCCGGCCGGCGGCGGCGCGC
CGCGTTCGACCAGTACCGGTACACGGGCGAGCTGCGCGCGGCGCACGTGG
TGCTGCCGCAGCGCGCGGTGCCGGCGGCCATTGCGCGCCCCGACTACGCC
GCCGACGGCATCCCGCGCGGCGAGGAGCGCTTCAACCGCAGCAGCGCGAG
GCTGAGCGTGCTGGACGCGCAGGGCGTGGCGGCGATGCGCACGGTGTGCC
GGCTGGCGCGCGAGGTGCTGGACATTGCCGTGCGCGCGGCCGGCGTGGGC
GTGAGCACCGAGCACATCGACCAGGTGGTGCACGCGGCGTGCGTGGAGCG
CGGCGCGTACCCCAGCCCGCTCAACTACTACGGCTTCCCCAAGTCGTGCT
GCACCAGCGTGAACGAGGTGATCTGCCACGGCATCCCGGACAAGCGCGCG
CTGCAGGACGGCGACATTGTGAACATCGACATCACGCTGTACCACGGCGG
CTTCCACGGCGACGTGAACGAGACGGTGTGCATCGGCAACGTGCAGCCGC
AGCACAAGGCGCTGATCCGCAGCGCGCACGACGCCATGTGGGCGGCGGTG
AGGCGCGTCAAGCCCGGCGTGCTGTTCCGCGAGTTTGGGGCGCACATCGA
GCGCGTGGCGCGCGCCAACGGCCACTCGGTGGTGCGCAGCTACTGCGGGC
ACGGCATTGGCGAGCACTTCCACACGGCGCCCAACGTGGCGCACTACCGC
AAGAACCGCGCGGTGGGCATGTGCAAGGCGGGCATGTGCTTCACGATCGA
GCCCATGCTGAACGGCGGGTCGTGGCGCGACGAGCTGTGGCCGGACAACT
GGACGGCGGTGACGGCCGACGGCAGCCGGTCGGCGCAGTTCGAGCACACG
GTGCTGGTGACGGACGACGGGTGCGAGGTGCTGACGGCGCGCGTGGACGG
CGGGCCCAGCATGTGGTGGGAGCTGGGCGGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_647:517020..518153-

>Gvermi13874.t1 ID=Gvermi13874.t1|Name=Gvermi13874.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1134bp|location=Sequence derived from alignment at ScGOVlb_647:517020..518153- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTGTGCGCGTCCGCAAACTGCCACAAGGCGGCCAGCCTGCGGTGCCC
CACGTGCGTCAAGCTGGAAATGGACGTGGTGTCCGACAGCTACTTCTGCA
CGCAGGAGTGCTTCCGCGCGTCGTGGGCGTCGCACAAGCAGCTGCACAAG
GGCTCGCCGCTGCCGCGCGGCGTGGACCCGTCCGGCCGGCGGCGGCGCGC
CGCGTTCGACCAGTACCGGTACACGGGCGAGCTGCGCGCGGCGCACGTGG
TGCTGCCGCAGCGCGCGGTGCCGGCGGCCATTGCGCGCCCCGACTACGCC
GCCGACGGCATCCCGCGCGGCGAGGAGCGCTTCAACCGCAGCAGCGCGAG
GCTGAGCGTGCTGGACGCGCAGGGCGTGGCGGCGATGCGCACGGTGTGCC
GGCTGGCGCGCGAGGTGCTGGACATTGCCGTGCGCGCGGCCGGCGTGGGC
GTGAGCACCGAGCACATCGACCAGGTGGTGCACGCGGCGTGCGTGGAGCG
CGGCGCGTACCCCAGCCCGCTCAACTACTACGGCTTCCCCAAGTCGTGCT
GCACCAGCGTGAACGAGGTGATCTGCCACGGCATCCCGGACAAGCGCGCG
CTGCAGGACGGCGACATTGTGAACATCGACATCACGCTGTACCACGGCGG
CTTCCACGGCGACGTGAACGAGACGGTGTGCATCGGCAACGTGCAGCCGC
AGCACAAGGCGCTGATCCGCAGCGCGCACGACGCCATGTGGGCGGCGGTG
AGGCGCGTCAAGCCCGGCGTGCTGTTCCGCGAGTTTGGGGCGCACATCGA
GCGCGTGGCGCGCGCCAACGGCCACTCGGTGGTGCGCAGCTACTGCGGGC
ACGGCATTGGCGAGCACTTCCACACGGCGCCCAACGTGGCGCACTACCGC
AAGAACCGCGCGGTGGGCATGTGCAAGGCGGGCATGTGCTTCACGATCGA
GCCCATGCTGAACGGCGGGTCGTGGCGCGACGAGCTGTGGCCGGACAACT
GGACGGCGGTGACGGCCGACGGCAGCCGGTCGGCGCAGTTCGAGCACACG
GTGCTGGTGACGGACGACGGGTGCGAGGTGCTGACGGCGCGCGTGGACGG
CGGGCCCAGCATGTGGTGGGAGCTGGGCGGCTGA
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