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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 72019.SARC_04193T0 |
| PFAMs | HtrL_YibB |
| Max annot lvl | 2759|Eukaryota |
| Evalue | 1.09e-45 |
| EggNOG OGs | 28KVY@1|root,2RXKG@2759|Eukaryota |
| Description | Bacterial protein of unknown function (HtrL_YibB) |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi13871.t1 ID=Gvermi13871.t1|Name=Gvermi13871.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=907bp MASPGPLHPRFPRSSASAQPLPLHLPAEKRLSSGARGRARALFRPLLLYR RSKKTRALVTLVLLALLISLLVFLLFGFVFPTSLAPLEHTVHSHLPPPLN VSHVADDSLNAPPQVPPHNRTSDPPAEDDTRDAASPQHVPEQQPVQQQME DEAPVSDHDKILVDTVQPVRADISALAKQREKHDQASMSIVVLFHNEYES MKTSLKSWLDNGLIDYAQEIVFFLNGVDSEKQFLQEITQYQQIPEAKRTI HVSAENLPLGKAIVKMVELASSEYVLLLEKDWKLIEPPHITKSRLIDSKV IIASGIAHLVRHRHRHDPGVPLHALIMHQGREASILKQQPNLLCFVHHWQ EDPPSSFPGKGIMHRCGGTERNVDEEDVYCSSSKYCQWNNNPGIFKRKWF LDEIGKEYLKQYKIEFDQHGIESPFLDFEYYTNWRSYAWTDKNFTIAVGT GLFSHAESEHKHFNTFWYAHYRLETDLEEVRNQYLRNESRFKKLGGVHYD PDFPKPLSMRERYPVEFVRKFQFSDMYTGTVDTQRKMIDEYYQEYLRENR VWTEEEWNKGGGAKSSKLTAPVNWRAHITKLHSIVEKAMMIAPAPMPHET NITLVTCLLDIGRDSLANDAYQFRRDFKMYLDAMHDWLRHKYVKVVYTSK QIADELLTGMSDEARASTKFVYITREELRTKWLGVDNYEKVQQIRQSKQW IERASWLANSPQARLKDYNPLVMSKMYMMRDAARHNFWGTTHFVFFDAKH NCRQVDMMHEKNDHILRAHMLHKLLLTTFDYTPTTEVHGFEYKAFNRFCN RQKEEERQLVRVGRGGIFGGSAFVLEYVTAMYDVALTATLREGVMGTEEN VLSIVKYQVPQYVDEFSNNWACAEKVEKDHYCESMRGHQGYNCAIVEWMA RDGVRA* back to topspliced messenger RNA >Gvermi13871.t1 ID=Gvermi13871.t1|Name=Gvermi13871.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2721bp|location=Sequence derived from alignment at ScGOVlb_647:468534..471254+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCCTCGCCGGGCCCGCTGCACCCGCGCTTCCCGAGATCGTCGGCGTC GGCGCAGCCGCTGCCGCTGCATCTCCCGGCTGAGAAGCGCCTGTCCTCTG GCGCAAGGGGCCGCGCGCGCGCCCTCTTTCGCCCGCTGCTGCTGTACCGC CGTTCCAAGAAGACGCGCGCCCTAGTTACGCTCGTTTTGCTGGCCTTGTT GATTTCTCTGCTCGTGTTTTTGTTGTTCGGTTTCGTCTTTCCCACTTCCC TTGCTCCGCTGGAGCACACCGTTCACTCGCATCTTCCGCCGCCCCTGAAT GTGTCACATGTCGCTGACGATTCTTTGAACGCTCCCCCTCAAGTGCCGCC GCATAACCGCACCAGTGATCCGCCTGCGGAAGACGACACTCGCGATGCTG CAAGCCCGCAGCACGTTCCCGAACAACAGCCTGTCCAGCAACAGATGGAA GACGAAGCTCCTGTGAGCGATCATGACAAGATCCTGGTTGACACTGTTCA ACCAGTGCGTGCAGACATCTCCGCGCTTGCTAAGCAACGTGAAAAGCATG ACCAAGCCTCCATGTCCATCGTCGTGCTGTTCCACAATGAATACGAATCC ATGAAGACCTCTCTGAAGTCTTGGCTTGATAATGGTCTCATCGACTACGC TCAGGAAATTGTCTTCTTCCTAAACGGCGTCGACAGCGAGAAGCAATTTC TGCAAGAAATAACCCAGTATCAGCAGATACCTGAGGCTAAACGCACCATA CACGTTTCCGCGGAGAATCTCCCCTTGGGGAAAGCCATTGTCAAAATGGT CGAGCTGGCTTCAAGCGAATATGTACTGTTACTGGAAAAGGATTGGAAGC TAATTGAACCTCCGCACATAACTAAGTCCCGTCTCATTGATTCCAAGGTT ATCATTGCCTCCGGCATTGCACATCTGGTTCGTCACCGCCATCGTCATGA CCCTGGTGTTCCGCTGCATGCATTGATAATGCACCAAGGCAGAGAAGCGT CTATTCTTAAACAACAGCCCAACTTGCTGTGTTTCGTGCACCACTGGCAA GAAGACCCGCCCAGCTCGTTCCCCGGAAAAGGAATTATGCATCGCTGTGG CGGCACAGAACGAAACGTGGACGAAGAGGACGTATATTGTTCATCTTCAA AGTACTGTCAGTGGAACAACAATCCTGGCATATTCAAGAGGAAGTGGTTT TTGGACGAGATTGGCAAGGAGTACCTCAAGCAGTACAAGATCGAGTTTGA CCAACATGGAATTGAATCGCCTTTTCTTGACTTTGAGTACTACACAAACT GGAGGTCTTACGCATGGACGGACAAAAATTTCACCATTGCCGTCGGCACT GGGTTGTTCAGTCATGCGGAATCGGAACACAAACACTTCAACACGTTCTG GTATGCGCACTATCGCCTGGAAACGGATTTGGAAGAAGTGCGCAACCAAT ATCTTCGTAACGAGTCTCGGTTCAAGAAACTCGGTGGCGTGCATTACGAC CCTGACTTCCCAAAGCCACTTAGTATGAGAGAAAGGTACCCAGTGGAATT CGTAAGAAAGTTCCAGTTTTCGGACATGTACACGGGAACAGTGGACACGC AACGAAAAATGATCGACGAGTACTATCAAGAGTACCTGCGCGAAAACCGA GTTTGGACTGAGGAGGAATGGAATAAGGGCGGTGGGGCCAAGTCGTCGAA GTTGACTGCGCCCGTAAACTGGAGAGCGCACATCACCAAACTGCACTCGA TCGTGGAAAAGGCGATGATGATTGCGCCGGCGCCTATGCCACACGAGACA AACATCACGCTGGTGACCTGTCTGTTGGACATAGGACGTGACTCGCTGGC AAACGACGCATACCAGTTCAGGCGCGATTTCAAGATGTACCTCGACGCGA TGCACGATTGGTTGCGACACAAGTACGTGAAAGTGGTGTACACCTCTAAG CAGATTGCGGACGAGCTGTTGACGGGCATGAGCGATGAAGCCAGGGCATC CACCAAGTTTGTGTACATCACGCGCGAGGAGCTGCGCACCAAGTGGCTGG GGGTGGACAACTACGAAAAGGTGCAGCAGATCCGGCAGTCCAAGCAGTGG ATTGAACGGGCATCATGGCTTGCCAACTCGCCGCAGGCGCGGCTGAAGGA CTACAACCCGCTGGTGATGTCCAAGATGTACATGATGCGCGACGCGGCAC GGCACAACTTTTGGGGCACGACGCACTTTGTGTTCTTCGACGCGAAGCAC AACTGCCGGCAGGTGGACATGATGCACGAGAAGAACGACCACATCCTGCG CGCGCACATGCTGCACAAGCTGCTGCTGACCACGTTTGACTACACGCCGA CGACGGAGGTGCACGGGTTTGAGTACAAGGCGTTCAACCGGTTCTGCAAC CGACAGAAGGAGGAGGAGCGGCAGTTGGTGCGGGTAGGGCGGGGGGGGAT CTTCGGGGGGTCGGCGTTTGTGCTGGAGTATGTGACTGCGATGTACGACG TGGCGCTGACGGCGACGCTGCGGGAAGGGGTGATGGGGACTGAGGAGAAC GTGCTGTCGATAGTCAAGTACCAGGTGCCGCAGTACGTAGACGAGTTCAG CAACAACTGGGCGTGCGCGGAGAAGGTGGAGAAGGACCACTACTGCGAGA GCATGCGGGGGCACCAGGGGTACAACTGCGCGATAGTGGAGTGGATGGCG CGGGACGGGGTGCGCGCGTGA back to topprotein sequence of Gvermi13871.t1 >Gvermi13871.t1 ID=Gvermi13871.t1|Name=Gvermi13871.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=907bp
MASPGPLHPRFPRSSASAQPLPLHLPAEKRLSSGARGRARALFRPLLLYR RSKKTRALVTLVLLALLISLLVFLLFGFVFPTSLAPLEHTVHSHLPPPLN VSHVADDSLNAPPQVPPHNRTSDPPAEDDTRDAASPQHVPEQQPVQQQME DEAPVSDHDKILVDTVQPVRADISALAKQREKHDQASMSIVVLFHNEYES MKTSLKSWLDNGLIDYAQEIVFFLNGVDSEKQFLQEITQYQQIPEAKRTI HVSAENLPLGKAIVKMVELASSEYVLLLEKDWKLIEPPHITKSRLIDSKV IIASGIAHLVRHRHRHDPGVPLHALIMHQGREASILKQQPNLLCFVHHWQ EDPPSSFPGKGIMHRCGGTERNVDEEDVYCSSSKYCQWNNNPGIFKRKWF LDEIGKEYLKQYKIEFDQHGIESPFLDFEYYTNWRSYAWTDKNFTIAVGT GLFSHAESEHKHFNTFWYAHYRLETDLEEVRNQYLRNESRFKKLGGVHYD PDFPKPLSMRERYPVEFVRKFQFSDMYTGTVDTQRKMIDEYYQEYLRENR VWTEEEWNKGGGAKSSKLTAPVNWRAHITKLHSIVEKAMMIAPAPMPHET NITLVTCLLDIGRDSLANDAYQFRRDFKMYLDAMHDWLRHKYVKVVYTSK QIADELLTGMSDEARASTKFVYITREELRTKWLGVDNYEKVQQIRQSKQW IERASWLANSPQARLKDYNPLVMSKMYMMRDAARHNFWGTTHFVFFDAKH NCRQVDMMHEKNDHILRAHMLHKLLLTTFDYTPTTEVHGFEYKAFNRFCN RQKEEERQLVRVGRGGIFGGSAFVLEYVTAMYDVALTATLREGVMGTEEN VLSIVKYQVPQYVDEFSNNWACAEKVEKDHYCESMRGHQGYNCAIVEWMA RDGVRA* back to topmRNA from alignment at ScGOVlb_647:468534..471254+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi13871.t1 ID=Gvermi13871.t1|Name=Gvermi13871.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2721bp|location=Sequence derived from alignment at ScGOVlb_647:468534..471254+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGCCTCGCCGGGCCCGCTGCACCCGCGCTTCCCGAGATCGTCGGCGTC
GGCGCAGCCGCTGCCGCTGCATCTCCCGGCTGAGAAGCGCCTGTCCTCTG
GCGCAAGGGGCCGCGCGCGCGCCCTCTTTCGCCCGCTGCTGCTGTACCGC
CGTTCCAAGAAGACGCGCGCCCTAGTTACGCTCGTTTTGCTGGCCTTGTT
GATTTCTCTGCTCGTGTTTTTGTTGTTCGGTTTCGTCTTTCCCACTTCCC
TTGCTCCGCTGGAGCACACCGTTCACTCGCATCTTCCGCCGCCCCTGAAT
GTGTCACATGTCGCTGACGATTCTTTGAACGCTCCCCCTCAAGTGCCGCC
GCATAACCGCACCAGTGATCCGCCTGCGGAAGACGACACTCGCGATGCTG
CAAGCCCGCAGCACGTTCCCGAACAACAGCCTGTCCAGCAACAGATGGAA
GACGAAGCTCCTGTGAGCGATCATGACAAGATCCTGGTTGACACTGTTCA
ACCAGTGCGTGCAGACATCTCCGCGCTTGCTAAGCAACGTGAAAAGCATG
ACCAAGCCTCCATGTCCATCGTCGTGCTGTTCCACAATGAATACGAATCC
ATGAAGACCTCTCTGAAGTCTTGGCTTGATAATGGTCTCATCGACTACGC
TCAGGAAATTGTCTTCTTCCTAAACGGCGTCGACAGCGAGAAGCAATTTC
TGCAAGAAATAACCCAGTATCAGCAGATACCTGAGGCTAAACGCACCATA
CACGTTTCCGCGGAGAATCTCCCCTTGGGGAAAGCCATTGTCAAAATGGT
CGAGCTGGCTTCAAGCGAATATGTACTGTTACTGGAAAAGGATTGGAAGC
TAATTGAACCTCCGCACATAACTAAGTCCCGTCTCATTGATTCCAAGGTT
ATCATTGCCTCCGGCATTGCACATCTGGTTCGTCACCGCCATCGTCATGA
CCCTGGTGTTCCGCTGCATGCATTGATAATGCACCAAGGCAGAGAAGCGT
CTATTCTTAAACAACAGCCCAACTTGCTGTGTTTCGTGCACCACTGGCAA
GAAGACCCGCCCAGCTCGTTCCCCGGAAAAGGAATTATGCATCGCTGTGG
CGGCACAGAACGAAACGTGGACGAAGAGGACGTATATTGTTCATCTTCAA
AGTACTGTCAGTGGAACAACAATCCTGGCATATTCAAGAGGAAGTGGTTT
TTGGACGAGATTGGCAAGGAGTACCTCAAGCAGTACAAGATCGAGTTTGA
CCAACATGGAATTGAATCGCCTTTTCTTGACTTTGAGTACTACACAAACT
GGAGGTCTTACGCATGGACGGACAAAAATTTCACCATTGCCGTCGGCACT
GGGTTGTTCAGTCATGCGGAATCGGAACACAAACACTTCAACACGTTCTG
GTATGCGCACTATCGCCTGGAAACGGATTTGGAAGAAGTGCGCAACCAAT
ATCTTCGTAACGAGTCTCGGTTCAAGAAACTCGGTGGCGTGCATTACGAC
CCTGACTTCCCAAAGCCACTTAGTATGAGAGAAAGGTACCCAGTGGAATT
CGTAAGAAAGTTCCAGTTTTCGGACATGTACACGGGAACAGTGGACACGC
AACGAAAAATGATCGACGAGTACTATCAAGAGTACCTGCGCGAAAACCGA
GTTTGGACTGAGGAGGAATGGAATAAGGGCGGTGGGGCCAAGTCGTCGAA
GTTGACTGCGCCCGTAAACTGGAGAGCGCACATCACCAAACTGCACTCGA
TCGTGGAAAAGGCGATGATGATTGCGCCGGCGCCTATGCCACACGAGACA
AACATCACGCTGGTGACCTGTCTGTTGGACATAGGACGTGACTCGCTGGC
AAACGACGCATACCAGTTCAGGCGCGATTTCAAGATGTACCTCGACGCGA
TGCACGATTGGTTGCGACACAAGTACGTGAAAGTGGTGTACACCTCTAAG
CAGATTGCGGACGAGCTGTTGACGGGCATGAGCGATGAAGCCAGGGCATC
CACCAAGTTTGTGTACATCACGCGCGAGGAGCTGCGCACCAAGTGGCTGG
GGGTGGACAACTACGAAAAGGTGCAGCAGATCCGGCAGTCCAAGCAGTGG
ATTGAACGGGCATCATGGCTTGCCAACTCGCCGCAGGCGCGGCTGAAGGA
CTACAACCCGCTGGTGATGTCCAAGATGTACATGATGCGCGACGCGGCAC
GGCACAACTTTTGGGGCACGACGCACTTTGTGTTCTTCGACGCGAAGCAC
AACTGCCGGCAGGTGGACATGATGCACGAGAAGAACGACCACATCCTGCG
CGCGCACATGCTGCACAAGCTGCTGCTGACCACGTTTGACTACACGCCGA
CGACGGAGGTGCACGGGTTTGAGTACAAGGCGTTCAACCGGTTCTGCAAC
CGACAGAAGGAGGAGGAGCGGCAGTTGGTGCGGGTAGGGCGGGGGGGGAT
CTTCGGGGGGTCGGCGTTTGTGCTGGAGTATGTGACTGCGATGTACGACG
TGGCGCTGACGGCGACGCTGCGGGAAGGGGTGATGGGGACTGAGGAGAAC
GTGCTGTCGATAGTCAAGTACCAGGTGCCGCAGTACGTAGACGAGTTCAG
CAACAACTGGGCGTGCGCGGAGAAGGTGGAGAAGGACCACTACTGCGAGA
GCATGCGGGGGCACCAGGGGTACAACTGCGCGATAGTGGAGTGGATGGCG
CGGGACGGGGTGCGCGCGTGA back to topCoding sequence (CDS) from alignment at ScGOVlb_647:468534..471254+ >Gvermi13871.t1 ID=Gvermi13871.t1|Name=Gvermi13871.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2721bp|location=Sequence derived from alignment at ScGOVlb_647:468534..471254+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGCCTCGCCGGGCCCGCTGCACCCGCGCTTCCCGAGATCGTCGGCGTC GGCGCAGCCGCTGCCGCTGCATCTCCCGGCTGAGAAGCGCCTGTCCTCTG GCGCAAGGGGCCGCGCGCGCGCCCTCTTTCGCCCGCTGCTGCTGTACCGC CGTTCCAAGAAGACGCGCGCCCTAGTTACGCTCGTTTTGCTGGCCTTGTT GATTTCTCTGCTCGTGTTTTTGTTGTTCGGTTTCGTCTTTCCCACTTCCC TTGCTCCGCTGGAGCACACCGTTCACTCGCATCTTCCGCCGCCCCTGAAT GTGTCACATGTCGCTGACGATTCTTTGAACGCTCCCCCTCAAGTGCCGCC GCATAACCGCACCAGTGATCCGCCTGCGGAAGACGACACTCGCGATGCTG CAAGCCCGCAGCACGTTCCCGAACAACAGCCTGTCCAGCAACAGATGGAA GACGAAGCTCCTGTGAGCGATCATGACAAGATCCTGGTTGACACTGTTCA ACCAGTGCGTGCAGACATCTCCGCGCTTGCTAAGCAACGTGAAAAGCATG ACCAAGCCTCCATGTCCATCGTCGTGCTGTTCCACAATGAATACGAATCC ATGAAGACCTCTCTGAAGTCTTGGCTTGATAATGGTCTCATCGACTACGC TCAGGAAATTGTCTTCTTCCTAAACGGCGTCGACAGCGAGAAGCAATTTC TGCAAGAAATAACCCAGTATCAGCAGATACCTGAGGCTAAACGCACCATA CACGTTTCCGCGGAGAATCTCCCCTTGGGGAAAGCCATTGTCAAAATGGT CGAGCTGGCTTCAAGCGAATATGTACTGTTACTGGAAAAGGATTGGAAGC TAATTGAACCTCCGCACATAACTAAGTCCCGTCTCATTGATTCCAAGGTT ATCATTGCCTCCGGCATTGCACATCTGGTTCGTCACCGCCATCGTCATGA CCCTGGTGTTCCGCTGCATGCATTGATAATGCACCAAGGCAGAGAAGCGT CTATTCTTAAACAACAGCCCAACTTGCTGTGTTTCGTGCACCACTGGCAA GAAGACCCGCCCAGCTCGTTCCCCGGAAAAGGAATTATGCATCGCTGTGG CGGCACAGAACGAAACGTGGACGAAGAGGACGTATATTGTTCATCTTCAA AGTACTGTCAGTGGAACAACAATCCTGGCATATTCAAGAGGAAGTGGTTT TTGGACGAGATTGGCAAGGAGTACCTCAAGCAGTACAAGATCGAGTTTGA CCAACATGGAATTGAATCGCCTTTTCTTGACTTTGAGTACTACACAAACT GGAGGTCTTACGCATGGACGGACAAAAATTTCACCATTGCCGTCGGCACT GGGTTGTTCAGTCATGCGGAATCGGAACACAAACACTTCAACACGTTCTG GTATGCGCACTATCGCCTGGAAACGGATTTGGAAGAAGTGCGCAACCAAT ATCTTCGTAACGAGTCTCGGTTCAAGAAACTCGGTGGCGTGCATTACGAC CCTGACTTCCCAAAGCCACTTAGTATGAGAGAAAGGTACCCAGTGGAATT CGTAAGAAAGTTCCAGTTTTCGGACATGTACACGGGAACAGTGGACACGC AACGAAAAATGATCGACGAGTACTATCAAGAGTACCTGCGCGAAAACCGA GTTTGGACTGAGGAGGAATGGAATAAGGGCGGTGGGGCCAAGTCGTCGAA GTTGACTGCGCCCGTAAACTGGAGAGCGCACATCACCAAACTGCACTCGA TCGTGGAAAAGGCGATGATGATTGCGCCGGCGCCTATGCCACACGAGACA AACATCACGCTGGTGACCTGTCTGTTGGACATAGGACGTGACTCGCTGGC AAACGACGCATACCAGTTCAGGCGCGATTTCAAGATGTACCTCGACGCGA TGCACGATTGGTTGCGACACAAGTACGTGAAAGTGGTGTACACCTCTAAG CAGATTGCGGACGAGCTGTTGACGGGCATGAGCGATGAAGCCAGGGCATC CACCAAGTTTGTGTACATCACGCGCGAGGAGCTGCGCACCAAGTGGCTGG GGGTGGACAACTACGAAAAGGTGCAGCAGATCCGGCAGTCCAAGCAGTGG ATTGAACGGGCATCATGGCTTGCCAACTCGCCGCAGGCGCGGCTGAAGGA CTACAACCCGCTGGTGATGTCCAAGATGTACATGATGCGCGACGCGGCAC GGCACAACTTTTGGGGCACGACGCACTTTGTGTTCTTCGACGCGAAGCAC AACTGCCGGCAGGTGGACATGATGCACGAGAAGAACGACCACATCCTGCG CGCGCACATGCTGCACAAGCTGCTGCTGACCACGTTTGACTACACGCCGA CGACGGAGGTGCACGGGTTTGAGTACAAGGCGTTCAACCGGTTCTGCAAC CGACAGAAGGAGGAGGAGCGGCAGTTGGTGCGGGTAGGGCGGGGGGGGAT CTTCGGGGGGTCGGCGTTTGTGCTGGAGTATGTGACTGCGATGTACGACG TGGCGCTGACGGCGACGCTGCGGGAAGGGGTGATGGGGACTGAGGAGAAC GTGCTGTCGATAGTCAAGTACCAGGTGCCGCAGTACGTAGACGAGTTCAG CAACAACTGGGCGTGCGCGGAGAAGGTGGAGAAGGACCACTACTGCGAGA GCATGCGGGGGCACCAGGGGTACAACTGCGCGATAGTGGAGTGGATGGCG CGGGACGGGGTGCGCGCGTGA back to top
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