Gvermi13870.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13870.t1
Unique NameGvermi13870.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length800
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:465739..468138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_04193T0
PFAMsHtrL_YibB
Max annot lvl2759|Eukaryota
Evalue6.42e-61
EggNOG OGs28KVY@1|root,2RXKG@2759|Eukaryota
DescriptionBacterial protein of unknown function (HtrL_YibB)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13870Gvermi13870Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 465739..468138 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13870.t1.stop1Gvermi13870.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 465739..465741 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13870.t1.CDS1Gvermi13870.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 465739..468138 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13870.t1.exon1Gvermi13870.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 465739..468138 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13870.t1.start1Gvermi13870.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 468136..468138 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13870.t1Gvermi13870.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 465739..468138 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13870.t1 ID=Gvermi13870.t1|Name=Gvermi13870.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=800bp
MPAFSAAVARHRTVRTVFKPSSSKRPFLRFRIARISPVFVTALITALALA
FLLSFALFGAFRSSPPSNISAVVLFHGELEAFQHALQTWHHNGLLHLVDE
VIIFVNGASSHGKHPMLSRNTTPHFFALPYTKRRIIFSPDNLPLGLAISR
MVRAARCDYVLLLEKDWALIEDAATTQSRLLYSKQLLHHKIANVVRFRHR
HNPGVPLHALIMHYGREQSILSIQKNLLCYVHHWQSDPPSMFPGKGRISE
CPKPPASQQLPVQREDHVYCASSEYCQWTNNPALFGRKWFINNVLDEFEK
QYKLEHAEYGDSSPFLDFEYYTNWRSYAWADKNFTVALGTGLFSHDERQE
QKYFNTFWYAHYRLTVDLEELRDQYLQNETSFKAAGGVHYDPESPYPLTL
RERYPVEFVRKYQWPDVYTGSLNDQRSMINDVYAQFLKEHRVLPDEDQNS
PEAKEKSESQVPWRSYVTNIHFKVEKAMLLVPPEQPHEMNITLVTSLLDI
GRSSLDDDEYQFRRDFQMYLDAAQTWLTHQYPKVMYTTRRIADELRKNMS
EEAKNSTVFEYTTREELRTRWLGPDNFDLVQRIRNSSEWLGRASWLANSP
QAGLEDYNPLVMSKMFMMRHAARTNHWNTTHFLFVDAKHNCQNPRVMNPK
NDHIIRAHMFDKLLMTHFDYTPSTEVHGFEYSAFNKYCNMENATERQNVK
VGRGGVFGGSRFVLEYIAAIYDVILTATLREGLMGTEENIFSIIMYQVPQ
YVDGFNNNWACPDNVAKDHYCKSMRDHQGYNCAIFDWVARNAVATEENA*
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spliced messenger RNA

>Gvermi13870.t1 ID=Gvermi13870.t1|Name=Gvermi13870.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2400bp|location=Sequence derived from alignment at ScGOVlb_647:465739..468138- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGCCTTCTCCGCCGCCGTGGCGCGCCACCGAACGGTTCGCACCGT
CTTCAAGCCCTCGTCGTCCAAGCGCCCCTTTTTGCGTTTCAGGATCGCCC
GCATTAGCCCCGTGTTCGTCACCGCCCTTATCACCGCCCTCGCCCTCGCT
TTCCTGCTGTCCTTCGCCCTCTTTGGTGCCTTCCGATCATCGCCTCCTTC
AAACATTTCCGCCGTCGTGCTGTTTCACGGCGAGCTCGAGGCCTTTCAGC
ATGCGTTGCAGACATGGCATCACAACGGCCTGCTCCATCTCGTCGACGAG
GTTATCATCTTCGTCAATGGCGCCTCGTCGCACGGGAAACACCCCATGCT
CTCACGGAACACCACCCCGCACTTCTTTGCGCTTCCGTACACCAAGCGCC
GCATCATTTTCTCGCCCGACAACCTACCGCTAGGTCTGGCCATCTCACGC
ATGGTACGAGCCGCGCGCTGCGACTATGTGCTCTTGCTTGAAAAAGATTG
GGCACTTATTGAAGATGCCGCCACTACGCAATCGCGACTCCTATACTCCA
AGCAGCTTCTGCACCACAAAATCGCCAATGTTGTGCGATTTAGGCATCGT
CACAACCCGGGCGTCCCATTACATGCTCTCATCATGCATTACGGCAGAGA
GCAATCAATTCTCTCCATTCAGAAGAATTTACTCTGCTATGTGCATCACT
GGCAATCCGACCCGCCCTCTATGTTCCCTGGCAAGGGCCGCATCAGCGAG
TGCCCAAAGCCACCTGCTTCGCAACAATTGCCTGTTCAGCGTGAGGACCA
CGTGTACTGCGCTTCCTCCGAATATTGTCAGTGGACTAACAATCCCGCGT
TGTTTGGACGAAAGTGGTTCATCAACAATGTCTTGGATGAGTTTGAGAAG
CAGTACAAGCTCGAGCATGCTGAGTACGGCGACTCGTCCCCGTTCTTGGA
CTTTGAGTACTACACCAACTGGCGCTCCTACGCATGGGCGGACAAGAACT
TCACTGTGGCGCTAGGAACAGGCCTGTTCAGTCATGACGAACGACAAGAG
CAAAAGTATTTCAACACATTTTGGTATGCTCATTACCGTCTCACCGTTGA
CCTCGAAGAGTTGAGAGACCAGTATTTGCAGAACGAAACTTCCTTCAAGG
CTGCAGGAGGTGTGCACTACGATCCAGAAAGTCCTTATCCTCTTACACTG
CGGGAAAGATATCCAGTTGAATTCGTGCGCAAATACCAATGGCCGGACGT
TTATACTGGCTCTCTGAACGATCAGCGATCCATGATTAATGATGTTTACG
CACAGTTTCTTAAAGAACACAGAGTTCTTCCAGACGAAGATCAGAACTCA
CCAGAGGCAAAGGAAAAGTCTGAAAGTCAAGTACCTTGGCGTTCATACGT
CACCAACATCCATTTCAAGGTTGAGAAGGCAATGCTCCTGGTTCCCCCGG
AACAGCCACACGAAATGAACATCACTCTAGTAACAAGCTTGCTGGACATT
GGCCGTTCGAGTCTGGACGATGACGAATATCAATTTCGACGAGATTTCCA
AATGTACCTTGATGCTGCGCAAACTTGGTTAACGCACCAGTATCCAAAAG
TCATGTACACTACTAGGCGAATCGCGGACGAACTGCGAAAGAACATGAGT
GAAGAAGCGAAGAATTCCACCGTGTTCGAGTACACCACAAGGGAAGAGCT
GCGTACGCGGTGGCTTGGGCCGGACAACTTTGATTTGGTGCAGCGGATTC
GAAATTCAAGCGAGTGGCTAGGCAGAGCTTCATGGCTCGCAAACTCTCCA
CAGGCCGGCTTGGAAGACTATAATCCTCTAGTCATGTCGAAGATGTTCAT
GATGCGGCACGCGGCACGAACAAACCACTGGAACACCACACACTTCTTAT
TCGTTGATGCCAAACACAACTGTCAGAATCCTAGGGTGATGAACCCTAAG
AATGACCACATTATTCGTGCTCACATGTTTGACAAACTGCTTATGACGCA
TTTCGACTACACGCCGAGCACCGAAGTGCATGGATTTGAGTACTCTGCAT
TCAACAAATATTGCAACATGGAAAACGCGACTGAACGACAAAACGTGAAA
GTGGGCAGAGGAGGGGTATTTGGCGGCTCTCGATTCGTGTTGGAATACAT
CGCTGCCATATACGACGTTATTTTGACTGCAACCCTACGCGAAGGCTTGA
TGGGCACCGAGGAGAACATTTTTTCCATCATTATGTATCAGGTTCCGCAA
TACGTGGATGGCTTCAACAACAACTGGGCTTGTCCAGATAATGTAGCAAA
GGATCACTATTGCAAGAGCATGCGAGATCATCAAGGGTATAATTGCGCTA
TCTTTGACTGGGTGGCGAGAAACGCTGTTGCCACCGAAGAGAATGCTTAG
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protein sequence of Gvermi13870.t1

>Gvermi13870.t1 ID=Gvermi13870.t1|Name=Gvermi13870.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=800bp
MPAFSAAVARHRTVRTVFKPSSSKRPFLRFRIARISPVFVTALITALALA
FLLSFALFGAFRSSPPSNISAVVLFHGELEAFQHALQTWHHNGLLHLVDE
VIIFVNGASSHGKHPMLSRNTTPHFFALPYTKRRIIFSPDNLPLGLAISR
MVRAARCDYVLLLEKDWALIEDAATTQSRLLYSKQLLHHKIANVVRFRHR
HNPGVPLHALIMHYGREQSILSIQKNLLCYVHHWQSDPPSMFPGKGRISE
CPKPPASQQLPVQREDHVYCASSEYCQWTNNPALFGRKWFINNVLDEFEK
QYKLEHAEYGDSSPFLDFEYYTNWRSYAWADKNFTVALGTGLFSHDERQE
QKYFNTFWYAHYRLTVDLEELRDQYLQNETSFKAAGGVHYDPESPYPLTL
RERYPVEFVRKYQWPDVYTGSLNDQRSMINDVYAQFLKEHRVLPDEDQNS
PEAKEKSESQVPWRSYVTNIHFKVEKAMLLVPPEQPHEMNITLVTSLLDI
GRSSLDDDEYQFRRDFQMYLDAAQTWLTHQYPKVMYTTRRIADELRKNMS
EEAKNSTVFEYTTREELRTRWLGPDNFDLVQRIRNSSEWLGRASWLANSP
QAGLEDYNPLVMSKMFMMRHAARTNHWNTTHFLFVDAKHNCQNPRVMNPK
NDHIIRAHMFDKLLMTHFDYTPSTEVHGFEYSAFNKYCNMENATERQNVK
VGRGGVFGGSRFVLEYIAAIYDVILTATLREGLMGTEENIFSIIMYQVPQ
YVDGFNNNWACPDNVAKDHYCKSMRDHQGYNCAIFDWVARNAVATEENA*
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mRNA from alignment at ScGOVlb_647:465739..468138-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13870.t1 ID=Gvermi13870.t1|Name=Gvermi13870.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2400bp|location=Sequence derived from alignment at ScGOVlb_647:465739..468138- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTGCCTTCTCCGCCGCCGTGGCGCGCCACCGAACGGTTCGCACCGT
CTTCAAGCCCTCGTCGTCCAAGCGCCCCTTTTTGCGTTTCAGGATCGCCC
GCATTAGCCCCGTGTTCGTCACCGCCCTTATCACCGCCCTCGCCCTCGCT
TTCCTGCTGTCCTTCGCCCTCTTTGGTGCCTTCCGATCATCGCCTCCTTC
AAACATTTCCGCCGTCGTGCTGTTTCACGGCGAGCTCGAGGCCTTTCAGC
ATGCGTTGCAGACATGGCATCACAACGGCCTGCTCCATCTCGTCGACGAG
GTTATCATCTTCGTCAATGGCGCCTCGTCGCACGGGAAACACCCCATGCT
CTCACGGAACACCACCCCGCACTTCTTTGCGCTTCCGTACACCAAGCGCC
GCATCATTTTCTCGCCCGACAACCTACCGCTAGGTCTGGCCATCTCACGC
ATGGTACGAGCCGCGCGCTGCGACTATGTGCTCTTGCTTGAAAAAGATTG
GGCACTTATTGAAGATGCCGCCACTACGCAATCGCGACTCCTATACTCCA
AGCAGCTTCTGCACCACAAAATCGCCAATGTTGTGCGATTTAGGCATCGT
CACAACCCGGGCGTCCCATTACATGCTCTCATCATGCATTACGGCAGAGA
GCAATCAATTCTCTCCATTCAGAAGAATTTACTCTGCTATGTGCATCACT
GGCAATCCGACCCGCCCTCTATGTTCCCTGGCAAGGGCCGCATCAGCGAG
TGCCCAAAGCCACCTGCTTCGCAACAATTGCCTGTTCAGCGTGAGGACCA
CGTGTACTGCGCTTCCTCCGAATATTGTCAGTGGACTAACAATCCCGCGT
TGTTTGGACGAAAGTGGTTCATCAACAATGTCTTGGATGAGTTTGAGAAG
CAGTACAAGCTCGAGCATGCTGAGTACGGCGACTCGTCCCCGTTCTTGGA
CTTTGAGTACTACACCAACTGGCGCTCCTACGCATGGGCGGACAAGAACT
TCACTGTGGCGCTAGGAACAGGCCTGTTCAGTCATGACGAACGACAAGAG
CAAAAGTATTTCAACACATTTTGGTATGCTCATTACCGTCTCACCGTTGA
CCTCGAAGAGTTGAGAGACCAGTATTTGCAGAACGAAACTTCCTTCAAGG
CTGCAGGAGGTGTGCACTACGATCCAGAAAGTCCTTATCCTCTTACACTG
CGGGAAAGATATCCAGTTGAATTCGTGCGCAAATACCAATGGCCGGACGT
TTATACTGGCTCTCTGAACGATCAGCGATCCATGATTAATGATGTTTACG
CACAGTTTCTTAAAGAACACAGAGTTCTTCCAGACGAAGATCAGAACTCA
CCAGAGGCAAAGGAAAAGTCTGAAAGTCAAGTACCTTGGCGTTCATACGT
CACCAACATCCATTTCAAGGTTGAGAAGGCAATGCTCCTGGTTCCCCCGG
AACAGCCACACGAAATGAACATCACTCTAGTAACAAGCTTGCTGGACATT
GGCCGTTCGAGTCTGGACGATGACGAATATCAATTTCGACGAGATTTCCA
AATGTACCTTGATGCTGCGCAAACTTGGTTAACGCACCAGTATCCAAAAG
TCATGTACACTACTAGGCGAATCGCGGACGAACTGCGAAAGAACATGAGT
GAAGAAGCGAAGAATTCCACCGTGTTCGAGTACACCACAAGGGAAGAGCT
GCGTACGCGGTGGCTTGGGCCGGACAACTTTGATTTGGTGCAGCGGATTC
GAAATTCAAGCGAGTGGCTAGGCAGAGCTTCATGGCTCGCAAACTCTCCA
CAGGCCGGCTTGGAAGACTATAATCCTCTAGTCATGTCGAAGATGTTCAT
GATGCGGCACGCGGCACGAACAAACCACTGGAACACCACACACTTCTTAT
TCGTTGATGCCAAACACAACTGTCAGAATCCTAGGGTGATGAACCCTAAG
AATGACCACATTATTCGTGCTCACATGTTTGACAAACTGCTTATGACGCA
TTTCGACTACACGCCGAGCACCGAAGTGCATGGATTTGAGTACTCTGCAT
TCAACAAATATTGCAACATGGAAAACGCGACTGAACGACAAAACGTGAAA
GTGGGCAGAGGAGGGGTATTTGGCGGCTCTCGATTCGTGTTGGAATACAT
CGCTGCCATATACGACGTTATTTTGACTGCAACCCTACGCGAAGGCTTGA
TGGGCACCGAGGAGAACATTTTTTCCATCATTATGTATCAGGTTCCGCAA
TACGTGGATGGCTTCAACAACAACTGGGCTTGTCCAGATAATGTAGCAAA
GGATCACTATTGCAAGAGCATGCGAGATCATCAAGGGTATAATTGCGCTA
TCTTTGACTGGGTGGCGAGAAACGCTGTTGCCACCGAAGAGAATGCTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_647:465739..468138-

>Gvermi13870.t1 ID=Gvermi13870.t1|Name=Gvermi13870.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2400bp|location=Sequence derived from alignment at ScGOVlb_647:465739..468138- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTGCCTTCTCCGCCGCCGTGGCGCGCCACCGAACGGTTCGCACCGT
CTTCAAGCCCTCGTCGTCCAAGCGCCCCTTTTTGCGTTTCAGGATCGCCC
GCATTAGCCCCGTGTTCGTCACCGCCCTTATCACCGCCCTCGCCCTCGCT
TTCCTGCTGTCCTTCGCCCTCTTTGGTGCCTTCCGATCATCGCCTCCTTC
AAACATTTCCGCCGTCGTGCTGTTTCACGGCGAGCTCGAGGCCTTTCAGC
ATGCGTTGCAGACATGGCATCACAACGGCCTGCTCCATCTCGTCGACGAG
GTTATCATCTTCGTCAATGGCGCCTCGTCGCACGGGAAACACCCCATGCT
CTCACGGAACACCACCCCGCACTTCTTTGCGCTTCCGTACACCAAGCGCC
GCATCATTTTCTCGCCCGACAACCTACCGCTAGGTCTGGCCATCTCACGC
ATGGTACGAGCCGCGCGCTGCGACTATGTGCTCTTGCTTGAAAAAGATTG
GGCACTTATTGAAGATGCCGCCACTACGCAATCGCGACTCCTATACTCCA
AGCAGCTTCTGCACCACAAAATCGCCAATGTTGTGCGATTTAGGCATCGT
CACAACCCGGGCGTCCCATTACATGCTCTCATCATGCATTACGGCAGAGA
GCAATCAATTCTCTCCATTCAGAAGAATTTACTCTGCTATGTGCATCACT
GGCAATCCGACCCGCCCTCTATGTTCCCTGGCAAGGGCCGCATCAGCGAG
TGCCCAAAGCCACCTGCTTCGCAACAATTGCCTGTTCAGCGTGAGGACCA
CGTGTACTGCGCTTCCTCCGAATATTGTCAGTGGACTAACAATCCCGCGT
TGTTTGGACGAAAGTGGTTCATCAACAATGTCTTGGATGAGTTTGAGAAG
CAGTACAAGCTCGAGCATGCTGAGTACGGCGACTCGTCCCCGTTCTTGGA
CTTTGAGTACTACACCAACTGGCGCTCCTACGCATGGGCGGACAAGAACT
TCACTGTGGCGCTAGGAACAGGCCTGTTCAGTCATGACGAACGACAAGAG
CAAAAGTATTTCAACACATTTTGGTATGCTCATTACCGTCTCACCGTTGA
CCTCGAAGAGTTGAGAGACCAGTATTTGCAGAACGAAACTTCCTTCAAGG
CTGCAGGAGGTGTGCACTACGATCCAGAAAGTCCTTATCCTCTTACACTG
CGGGAAAGATATCCAGTTGAATTCGTGCGCAAATACCAATGGCCGGACGT
TTATACTGGCTCTCTGAACGATCAGCGATCCATGATTAATGATGTTTACG
CACAGTTTCTTAAAGAACACAGAGTTCTTCCAGACGAAGATCAGAACTCA
CCAGAGGCAAAGGAAAAGTCTGAAAGTCAAGTACCTTGGCGTTCATACGT
CACCAACATCCATTTCAAGGTTGAGAAGGCAATGCTCCTGGTTCCCCCGG
AACAGCCACACGAAATGAACATCACTCTAGTAACAAGCTTGCTGGACATT
GGCCGTTCGAGTCTGGACGATGACGAATATCAATTTCGACGAGATTTCCA
AATGTACCTTGATGCTGCGCAAACTTGGTTAACGCACCAGTATCCAAAAG
TCATGTACACTACTAGGCGAATCGCGGACGAACTGCGAAAGAACATGAGT
GAAGAAGCGAAGAATTCCACCGTGTTCGAGTACACCACAAGGGAAGAGCT
GCGTACGCGGTGGCTTGGGCCGGACAACTTTGATTTGGTGCAGCGGATTC
GAAATTCAAGCGAGTGGCTAGGCAGAGCTTCATGGCTCGCAAACTCTCCA
CAGGCCGGCTTGGAAGACTATAATCCTCTAGTCATGTCGAAGATGTTCAT
GATGCGGCACGCGGCACGAACAAACCACTGGAACACCACACACTTCTTAT
TCGTTGATGCCAAACACAACTGTCAGAATCCTAGGGTGATGAACCCTAAG
AATGACCACATTATTCGTGCTCACATGTTTGACAAACTGCTTATGACGCA
TTTCGACTACACGCCGAGCACCGAAGTGCATGGATTTGAGTACTCTGCAT
TCAACAAATATTGCAACATGGAAAACGCGACTGAACGACAAAACGTGAAA
GTGGGCAGAGGAGGGGTATTTGGCGGCTCTCGATTCGTGTTGGAATACAT
CGCTGCCATATACGACGTTATTTTGACTGCAACCCTACGCGAAGGCTTGA
TGGGCACCGAGGAGAACATTTTTTCCATCATTATGTATCAGGTTCCGCAA
TACGTGGATGGCTTCAACAACAACTGGGCTTGTCCAGATAATGTAGCAAA
GGATCACTATTGCAAGAGCATGCGAGATCATCAAGGGTATAATTGCGCTA
TCTTTGACTGGGTGGCGAGAAACGCTGTTGCCACCGAAGAGAATGCTTAG
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