Gvermi13858.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13858.t1
Unique NameGvermi13858.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length224
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:390053..390798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13858Gvermi13858Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 390053..390798 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13858.t1Gvermi13858.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 390053..390798 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13858.t1.stop1Gvermi13858.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 390053..390055 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13858.t1.CDS1Gvermi13858.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 390053..390502 -
Gvermi13858.t1.CDS2Gvermi13858.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 390577..390798 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13858.t1.exon1Gvermi13858.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 390053..390502 -
Gvermi13858.t1.exon2Gvermi13858.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 390577..390798 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13858.t1.intron1Gvermi13858.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_647 390503..390576 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13858.t1.start1Gvermi13858.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 390796..390798 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13858.t1 ID=Gvermi13858.t1|Name=Gvermi13858.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=224bp
MANVVGAAAALLSFVALVLAAIAVASNYWLKLSLDGDALASPLNPTTLDN
GLSDLTISYKLQHFGLWVGCHREIAFDKLSCAYIGASCYTNVCWERNGVD
TTCNNFRLVPVANCSAYQAARAMNVIGIILLILGSSILVVSVCVASDALS
TAGAALTLLSSLVLMIGFAVFYARTHNHLRDVASVGWSFVLLIVAWPLAF
VASLLAVAASLQSRKEEQFDESG*
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spliced messenger RNA

>Gvermi13858.t1 ID=Gvermi13858.t1|Name=Gvermi13858.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=672bp|location=Sequence derived from alignment at ScGOVlb_647:390053..390798- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAATGTCGTTGGCGCCGCCGCCGCGCTGCTGAGCTTCGTGGCGCT
CGTACTGGCCGCCATCGCCGTCGCCTCCAACTACTGGCTCAAGCTGTCGC
TGGACGGCGACGCGCTGGCGTCGCCGCTCAACCCCACCACGTTGGACAAC
GGGCTTTCCGACCTGACCATCAGCTACAAGCTGCAGCACTTCGGCCTGTG
GGTCGGGTGCCACCGCGAAATTGCGTTTGACAAGCTATCTTGCGCCTACA
TCGGCGCCTCGTGCTACACCAACGTGTGCTGGGAGCGCAACGGCGTCGAC
ACCACGTGCAACAACTTCCGCCTGGTGCCCGTGGCCAACTGCTCGGCGTA
CCAGGCGGCGCGCGCCATGAACGTCATCGGCATCATCCTGCTCATCCTGG
GCTCGTCCATCCTGGTGGTGTCCGTGTGCGTGGCGTCCGACGCGCTGTCC
ACGGCCGGCGCCGCGCTCACGCTGCTGTCCTCGCTCGTGCTCATGATCGG
CTTTGCCGTGTTCTACGCGCGCACGCACAACCACCTGCGCGACGTCGCCT
CCGTCGGCTGGTCGTTCGTACTGCTCATCGTCGCGTGGCCGCTGGCCTTT
GTGGCCTCGCTCCTCGCCGTCGCCGCCTCGCTGCAATCGCGCAAGGAAGA
GCAGTTCGACGAGTCGGGCTAG
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protein sequence of Gvermi13858.t1

>Gvermi13858.t1 ID=Gvermi13858.t1|Name=Gvermi13858.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=224bp
MANVVGAAAALLSFVALVLAAIAVASNYWLKLSLDGDALASPLNPTTLDN
GLSDLTISYKLQHFGLWVGCHREIAFDKLSCAYIGASCYTNVCWERNGVD
TTCNNFRLVPVANCSAYQAARAMNVIGIILLILGSSILVVSVCVASDALS
TAGAALTLLSSLVLMIGFAVFYARTHNHLRDVASVGWSFVLLIVAWPLAF
VASLLAVAASLQSRKEEQFDESG*
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mRNA from alignment at ScGOVlb_647:390053..390798-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13858.t1 ID=Gvermi13858.t1|Name=Gvermi13858.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=746bp|location=Sequence derived from alignment at ScGOVlb_647:390053..390798- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCAATGTCGTTGGCGCCGCCGCCGCGCTGCTGAGCTTCGTGGCGCT
CGTACTGGCCGCCATCGCCGTCGCCTCCAACTACTGGCTCAAGCTGTCGC
TGGACGGCGACGCGCTGGCGTCGCCGCTCAACCCCACCACGTTGGACAAC
GGGCTTTCCGACCTGACCATCAGCTACAAGCTGCAGCACTTCGGCCTGTG
GGTCGGGTGCCACCGCGAAATTGTAAGTGCCGCCGCCTCCCTGCCGCCGT
GCCGTCGTTCGCGCTGCTCACCGCGCCCCCTTGTCCGCGCGCGCAGGCGT
TTGACAAGCTATCTTGCGCCTACATCGGCGCCTCGTGCTACACCAACGTG
TGCTGGGAGCGCAACGGCGTCGACACCACGTGCAACAACTTCCGCCTGGT
GCCCGTGGCCAACTGCTCGGCGTACCAGGCGGCGCGCGCCATGAACGTCA
TCGGCATCATCCTGCTCATCCTGGGCTCGTCCATCCTGGTGGTGTCCGTG
TGCGTGGCGTCCGACGCGCTGTCCACGGCCGGCGCCGCGCTCACGCTGCT
GTCCTCGCTCGTGCTCATGATCGGCTTTGCCGTGTTCTACGCGCGCACGC
ACAACCACCTGCGCGACGTCGCCTCCGTCGGCTGGTCGTTCGTACTGCTC
ATCGTCGCGTGGCCGCTGGCCTTTGTGGCCTCGCTCCTCGCCGTCGCCGC
CTCGCTGCAATCGCGCAAGGAAGAGCAGTTCGACGAGTCGGGCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_647:390053..390798-

>Gvermi13858.t1 ID=Gvermi13858.t1|Name=Gvermi13858.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=672bp|location=Sequence derived from alignment at ScGOVlb_647:390053..390798- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCAATGTCGTTGGCGCCGCCGCCGCGCTGCTGAGCTTCGTGGCGCT
CGTACTGGCCGCCATCGCCGTCGCCTCCAACTACTGGCTCAAGCTGTCGC
TGGACGGCGACGCGCTGGCGTCGCCGCTCAACCCCACCACGTTGGACAAC
GGGCTTTCCGACCTGACCATCAGCTACAAGCTGCAGCACTTCGGCCTGTG
GGTCGGGTGCCACCGCGAAATTGCGTTTGACAAGCTATCTTGCGCCTACA
TCGGCGCCTCGTGCTACACCAACGTGTGCTGGGAGCGCAACGGCGTCGAC
ACCACGTGCAACAACTTCCGCCTGGTGCCCGTGGCCAACTGCTCGGCGTA
CCAGGCGGCGCGCGCCATGAACGTCATCGGCATCATCCTGCTCATCCTGG
GCTCGTCCATCCTGGTGGTGTCCGTGTGCGTGGCGTCCGACGCGCTGTCC
ACGGCCGGCGCCGCGCTCACGCTGCTGTCCTCGCTCGTGCTCATGATCGG
CTTTGCCGTGTTCTACGCGCGCACGCACAACCACCTGCGCGACGTCGCCT
CCGTCGGCTGGTCGTTCGTACTGCTCATCGTCGCGTGGCCGCTGGCCTTT
GTGGCCTCGCTCCTCGCCGTCGCCGCCTCGCTGCAATCGCGCAAGGAAGA
GCAGTTCGACGAGTCGGGCTAG
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