Gvermi13856.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi13856.t1
Unique Name	Gvermi13856.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	325

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_647	contig	ScGOVlb_647:387164..388138 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	248742.XP_005652002.1
Preferred name	RACK1
PFAMs	WD40
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K14753
KEGG Pathway	ko05162,map05162
Evalue	8.18e-155
EggNOG OGs	KOG0279@1\|root,KOG0279@2759\|Eukaryota,37HP9@33090\|Viridiplantae,34JNF@3041\|Chlorophyta
Description	component of 40S small ribosomal subunit
COG category	T
BRITE	ko00000,ko00001,ko03019,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi13856	Gvermi13856	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_647 387164..388138 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13856.t1.start1	Gvermi13856.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_647 387164..387166 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13856.t1.CDS1	Gvermi13856.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_647 387164..388138 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13856.t1.exon1	Gvermi13856.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_647 387164..388138 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13856.t1.stop1	Gvermi13856.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_647 388136..388138 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13856.t1	Gvermi13856.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_647 387164..388138 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_647:387164..388138+
coding sequence from alignment at ScGOVlb_647:387164..388138+

mRNA sequence

>Gvermi13856.t1 ID=Gvermi13856.t1|Name=Gvermi13856.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=325bp
MAESLSLRGYLKGHSGWVTAIAATVNPNDGDSPDIVLSASRDKTIIVWQL
TTDSEDQTSYGYPKRSLQGHGHFVSDVVLSYDGQFALSSSWDHTLRLWDL
NTGNTTRRFVGHTKDVLSVAFSADNRQIVSGSRDRTIKLWNTLGECKYTI
HDEGHSEWVSCVRFSPSTQNPLIVSCGWDKLVKVWNLTNCKLRTNLQKHS
GYLNAVTVSPDGSLCASGGKDGVAMLWDLQEGKHLYSLEANDIIHALCFS
PNRYWLCAATNSCIKIWDLESKTVVDELRDDQGEIGKKSAVPACISLAWS
SDGSTLFSGYTDNIIRVWGVGLGR*

spliced messenger RNA

>Gvermi13856.t1 ID=Gvermi13856.t1|Name=Gvermi13856.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=975bp|location=Sequence derived from alignment at ScGOVlb_647:387164..388138+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGAGTCTCTATCGCTCCGCGGATACCTCAAGGGCCACTCCGGCTG
GGTCACCGCCATCGCCGCCACGGTCAACCCCAACGACGGCGACTCGCCGG
ACATCGTGCTCTCCGCCTCGCGCGATAAGACCATCATCGTGTGGCAGCTC
ACCACCGATTCCGAGGATCAGACCTCATACGGCTACCCCAAGAGGTCGCT
GCAGGGCCACGGCCACTTTGTGTCCGATGTCGTCCTGTCGTACGACGGCC
AGTTTGCCTTGTCCTCGTCGTGGGATCACACCCTGCGCCTCTGGGATCTC
AACACCGGAAACACAACCCGCCGATTCGTCGGCCACACCAAGGACGTTCT
CTCCGTCGCCTTCTCCGCCGACAACCGCCAGATCGTGTCCGGATCGCGCG
ATCGAACCATCAAGTTGTGGAACACGCTCGGCGAGTGCAAGTACACCATC
CACGACGAGGGGCACTCCGAGTGGGTTTCGTGCGTTCGGTTCTCGCCGTC
TACGCAAAACCCGCTCATCGTGTCGTGCGGCTGGGACAAGCTCGTCAAGG
TGTGGAACCTCACCAACTGCAAGCTGCGCACCAACCTGCAGAAACACTCT
GGATACCTCAACGCCGTCACAGTGTCTCCGGACGGCTCGCTGTGCGCATC
GGGAGGCAAGGACGGTGTGGCCATGCTGTGGGACTTGCAAGAAGGGAAGC
ATTTATACTCTTTGGAAGCAAATGATATTATTCACGCTCTGTGTTTCTCT
CCGAATCGCTACTGGCTTTGCGCTGCCACCAACTCTTGTATCAAGATTTG
GGATTTGGAATCCAAGACAGTTGTGGACGAGCTGCGTGACGATCAGGGCG
AGATTGGTAAAAAGTCTGCTGTGCCAGCTTGCATTTCGCTAGCATGGTCG
AGTGACGGATCTACATTGTTCTCCGGATACACAGATAACATTATTCGTGT
GTGGGGCGTTGGTCTTGGTCGTTAG

protein sequence of Gvermi13856.t1

>Gvermi13856.t1 ID=Gvermi13856.t1|Name=Gvermi13856.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=325bp
MAESLSLRGYLKGHSGWVTAIAATVNPNDGDSPDIVLSASRDKTIIVWQL
TTDSEDQTSYGYPKRSLQGHGHFVSDVVLSYDGQFALSSSWDHTLRLWDL
NTGNTTRRFVGHTKDVLSVAFSADNRQIVSGSRDRTIKLWNTLGECKYTI
HDEGHSEWVSCVRFSPSTQNPLIVSCGWDKLVKVWNLTNCKLRTNLQKHS
GYLNAVTVSPDGSLCASGGKDGVAMLWDLQEGKHLYSLEANDIIHALCFS
PNRYWLCAATNSCIKIWDLESKTVVDELRDDQGEIGKKSAVPACISLAWS
SDGSTLFSGYTDNIIRVWGVGLGR*

mRNA from alignment at ScGOVlb_647:387164..388138+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi13856.t1 ID=Gvermi13856.t1|Name=Gvermi13856.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=975bp|location=Sequence derived from alignment at ScGOVlb_647:387164..388138+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAGAGTCTCTATCGCTCCGCGGATACCTCAAGGGCCACTCCGGCTG
GGTCACCGCCATCGCCGCCACGGTCAACCCCAACGACGGCGACTCGCCGG
ACATCGTGCTCTCCGCCTCGCGCGATAAGACCATCATCGTGTGGCAGCTC
ACCACCGATTCCGAGGATCAGACCTCATACGGCTACCCCAAGAGGTCGCT
GCAGGGCCACGGCCACTTTGTGTCCGATGTCGTCCTGTCGTACGACGGCC
AGTTTGCCTTGTCCTCGTCGTGGGATCACACCCTGCGCCTCTGGGATCTC
AACACCGGAAACACAACCCGCCGATTCGTCGGCCACACCAAGGACGTTCT
CTCCGTCGCCTTCTCCGCCGACAACCGCCAGATCGTGTCCGGATCGCGCG
ATCGAACCATCAAGTTGTGGAACACGCTCGGCGAGTGCAAGTACACCATC
CACGACGAGGGGCACTCCGAGTGGGTTTCGTGCGTTCGGTTCTCGCCGTC
TACGCAAAACCCGCTCATCGTGTCGTGCGGCTGGGACAAGCTCGTCAAGG
TGTGGAACCTCACCAACTGCAAGCTGCGCACCAACCTGCAGAAACACTCT
GGATACCTCAACGCCGTCACAGTGTCTCCGGACGGCTCGCTGTGCGCATC
GGGAGGCAAGGACGGTGTGGCCATGCTGTGGGACTTGCAAGAAGGGAAGC
ATTTATACTCTTTGGAAGCAAATGATATTATTCACGCTCTGTGTTTCTCT
CCGAATCGCTACTGGCTTTGCGCTGCCACCAACTCTTGTATCAAGATTTG
GGATTTGGAATCCAAGACAGTTGTGGACGAGCTGCGTGACGATCAGGGCG
AGATTGGTAAAAAGTCTGCTGTGCCAGCTTGCATTTCGCTAGCATGGTCG
AGTGACGGATCTACATTGTTCTCCGGATACACAGATAACATTATTCGTGT
GTGGGGCGTTGGTCTTGGTCGTTAG

Coding sequence (CDS) from alignment at ScGOVlb_647:387164..388138+

>Gvermi13856.t1 ID=Gvermi13856.t1|Name=Gvermi13856.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=975bp|location=Sequence derived from alignment at ScGOVlb_647:387164..388138+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAGAGTCTCTATCGCTCCGCGGATACCTCAAGGGCCACTCCGGCTG
GGTCACCGCCATCGCCGCCACGGTCAACCCCAACGACGGCGACTCGCCGG
ACATCGTGCTCTCCGCCTCGCGCGATAAGACCATCATCGTGTGGCAGCTC
ACCACCGATTCCGAGGATCAGACCTCATACGGCTACCCCAAGAGGTCGCT
GCAGGGCCACGGCCACTTTGTGTCCGATGTCGTCCTGTCGTACGACGGCC
AGTTTGCCTTGTCCTCGTCGTGGGATCACACCCTGCGCCTCTGGGATCTC
AACACCGGAAACACAACCCGCCGATTCGTCGGCCACACCAAGGACGTTCT
CTCCGTCGCCTTCTCCGCCGACAACCGCCAGATCGTGTCCGGATCGCGCG
ATCGAACCATCAAGTTGTGGAACACGCTCGGCGAGTGCAAGTACACCATC
CACGACGAGGGGCACTCCGAGTGGGTTTCGTGCGTTCGGTTCTCGCCGTC
TACGCAAAACCCGCTCATCGTGTCGTGCGGCTGGGACAAGCTCGTCAAGG
TGTGGAACCTCACCAACTGCAAGCTGCGCACCAACCTGCAGAAACACTCT
GGATACCTCAACGCCGTCACAGTGTCTCCGGACGGCTCGCTGTGCGCATC
GGGAGGCAAGGACGGTGTGGCCATGCTGTGGGACTTGCAAGAAGGGAAGC
ATTTATACTCTTTGGAAGCAAATGATATTATTCACGCTCTGTGTTTCTCT
CCGAATCGCTACTGGCTTTGCGCTGCCACCAACTCTTGTATCAAGATTTG
GGATTTGGAATCCAAGACAGTTGTGGACGAGCTGCGTGACGATCAGGGCG
AGATTGGTAAAAAGTCTGCTGTGCCAGCTTGCATTTCGCTAGCATGGTCG
AGTGACGGATCTACATTGTTCTCCGGATACACAGATAACATTATTCGTGT
GTGGGGCGTTGGTCTTGGTCGTTAG