Gvermi13840.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi13840.t1
Unique Name	Gvermi13840.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	630

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_647	contig	ScGOVlb_647:340479..342368 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4113.PGSC0003DMT400017657
PFAMs	Dor1
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K20295
Evalue	7.62e-84
EggNOG OGs	KOG2069@1\|root,KOG2069@2759\|Eukaryota,37SHY@33090\|Viridiplantae,3GFRB@35493\|Streptophyta,44BCX@71274\|asterids
Description	Conserved oligomeric Golgi complex
COG category	U
BRITE	ko00000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi13840	Gvermi13840	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_647 340479..342368 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13840.t1.start1	Gvermi13840.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_647 340479..340481 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13840.t1.CDS1	Gvermi13840.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_647 340479..342368 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13840.t1.exon1	Gvermi13840.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_647 340479..342368 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13840.t1.stop1	Gvermi13840.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_647 342366..342368 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13840.t1	Gvermi13840.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_647 340479..342368 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_647:340479..342368+
coding sequence from alignment at ScGOVlb_647:340479..342368+

mRNA sequence

>Gvermi13840.t1 ID=Gvermi13840.t1|Name=Gvermi13840.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=630bp
MTVEVLGEQERPPDSNSSSGPLDPEADAEEALKAICKFVLNDLPADAPSC
EKWHGLHAYIEELCGYSIERLSREPDDLNSACIRLKNELEDVACGNYRAL
IESFECAGAVRNGVADVRSRLDELINSLPKLADATRQFSASVMEKQRERE
SRLRAITEHRAVADIVEMPRLMTTLVRAELYDEALELRECALKLHAIHSD
EILIRHVCEEMDVLTQQMVLQLLVLLRNPIQLPMCLRIVGFLRRLDVFSE
CRLRMLFLHCRGEWMRNGMDTSTANTRQAELVSLSDNMRSMMFEIITQYR
AVFNDDIEDGNEELENGSSARSGTSYSHSSSILFDWTSASVLEYLNKLRS
GIKNVKDGAALNTILQQAMYCGQSLGRVGADFRATLPLMFEESVMNIYCS
HLNAALRQFEIMIEDNRWAPVGSSALRKERGQLGSGYKNDSQDRIEIPPS
NEYDPPLAILDSPPLAVFMNGILAAFNDLRLCAPVSLGSQLGKVLQETLI
SSGDFMTAIGGPGGAFLKRSDRPHYVSMALSLRDLCVPFLAKCLEYCMDS
TGLICVADVQDVLNSMFGDTLPREGALESSDGLPVEDSINSNQGSNSATD
ADDGHDAAGENGHVHEEVDKPETEENLIL*

spliced messenger RNA

>Gvermi13840.t1 ID=Gvermi13840.t1|Name=Gvermi13840.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1890bp|location=Sequence derived from alignment at ScGOVlb_647:340479..342368+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGTCGAGGTTCTCGGGGAACAAGAGAGACCTCCTGATTCCAATTC
GTCTTCCGGGCCTTTGGATCCCGAGGCAGACGCTGAGGAGGCACTGAAGG
CGATCTGCAAGTTTGTCCTGAACGACTTGCCCGCAGACGCTCCTTCATGC
GAGAAATGGCATGGACTGCACGCCTACATTGAAGAACTTTGCGGGTACAG
TATCGAAAGGCTCTCGCGTGAGCCCGACGATCTCAACTCTGCATGCATTC
GATTGAAGAACGAGCTCGAAGACGTTGCGTGTGGCAACTACCGAGCGCTG
ATAGAAAGTTTCGAATGTGCTGGAGCGGTCCGGAATGGCGTCGCAGACGT
GCGCTCCAGACTTGACGAACTGATCAATTCTCTGCCAAAGTTGGCTGACG
CCACCCGCCAGTTTTCTGCGAGCGTCATGGAAAAGCAGCGCGAGAGGGAG
AGCAGATTGCGCGCCATAACTGAACATCGGGCTGTAGCGGACATTGTGGA
AATGCCAAGACTGATGACAACGCTGGTGAGAGCCGAGTTGTATGACGAGG
CTTTGGAATTGCGCGAATGTGCGTTGAAGCTTCACGCCATACATAGCGAT
GAAATTCTTATTCGGCACGTCTGTGAGGAAATGGATGTTCTCACGCAGCA
AATGGTTCTTCAACTGCTTGTGCTCTTGCGGAACCCCATACAGTTGCCCA
TGTGCTTGCGAATAGTCGGCTTTCTTCGTCGCCTCGATGTGTTCTCGGAA
TGCAGGTTACGAATGCTATTTTTGCACTGTCGGGGCGAATGGATGAGAAA
CGGAATGGATACTTCGACGGCAAACACAAGACAAGCGGAGCTGGTTAGTC
TCAGCGATAACATGAGGTCCATGATGTTTGAAATTATCACACAGTATAGA
GCGGTGTTTAATGATGACATCGAAGACGGAAATGAAGAACTTGAAAATGG
TTCATCCGCTCGATCTGGAACATCTTACTCACATTCTTCCTCAATTCTTT
TTGATTGGACATCGGCATCCGTTTTGGAGTATTTGAATAAGCTTAGAAGT
GGTATAAAGAATGTCAAAGATGGCGCAGCATTGAACACAATTCTTCAGCA
AGCCATGTACTGCGGCCAATCTCTGGGTCGAGTTGGAGCTGATTTCCGAG
CTACCCTTCCACTAATGTTTGAAGAGTCTGTGATGAATATATACTGTTCT
CATCTCAACGCGGCCTTGCGACAATTCGAAATTATGATAGAAGACAACCG
TTGGGCTCCTGTCGGATCGTCAGCTCTGAGAAAGGAGAGGGGACAGCTCG
GAAGTGGTTACAAGAACGATTCTCAGGACAGGATTGAAATCCCACCAAGC
AATGAATATGATCCCCCTCTCGCAATTCTTGACAGTCCACCCCTTGCGGT
TTTTATGAATGGTATTCTTGCTGCTTTCAACGACTTGAGACTGTGCGCCC
CAGTTTCACTCGGGTCGCAACTTGGAAAGGTACTCCAAGAGACCCTCATA
AGTTCCGGAGATTTCATGACAGCTATTGGCGGCCCAGGCGGTGCGTTCCT
GAAAAGGTCGGACAGGCCGCATTACGTATCTATGGCACTTTCTTTGCGTG
ATTTGTGTGTGCCATTCCTTGCGAAGTGTTTAGAGTATTGTATGGACTCA
ACTGGATTAATATGTGTTGCAGATGTTCAAGATGTGTTGAACTCAATGTT
TGGAGACACACTACCTAGGGAGGGGGCACTTGAAAGTTCTGACGGACTAC
CAGTCGAGGATTCAATAAACTCTAACCAGGGTTCTAACTCAGCAACTGAT
GCAGATGACGGTCACGATGCAGCGGGAGAAAATGGCCATGTTCACGAAGA
AGTTGACAAACCTGAGACAGAAGAAAACCTGATTCTTTGA

protein sequence of Gvermi13840.t1

>Gvermi13840.t1 ID=Gvermi13840.t1|Name=Gvermi13840.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=630bp
MTVEVLGEQERPPDSNSSSGPLDPEADAEEALKAICKFVLNDLPADAPSC
EKWHGLHAYIEELCGYSIERLSREPDDLNSACIRLKNELEDVACGNYRAL
IESFECAGAVRNGVADVRSRLDELINSLPKLADATRQFSASVMEKQRERE
SRLRAITEHRAVADIVEMPRLMTTLVRAELYDEALELRECALKLHAIHSD
EILIRHVCEEMDVLTQQMVLQLLVLLRNPIQLPMCLRIVGFLRRLDVFSE
CRLRMLFLHCRGEWMRNGMDTSTANTRQAELVSLSDNMRSMMFEIITQYR
AVFNDDIEDGNEELENGSSARSGTSYSHSSSILFDWTSASVLEYLNKLRS
GIKNVKDGAALNTILQQAMYCGQSLGRVGADFRATLPLMFEESVMNIYCS
HLNAALRQFEIMIEDNRWAPVGSSALRKERGQLGSGYKNDSQDRIEIPPS
NEYDPPLAILDSPPLAVFMNGILAAFNDLRLCAPVSLGSQLGKVLQETLI
SSGDFMTAIGGPGGAFLKRSDRPHYVSMALSLRDLCVPFLAKCLEYCMDS
TGLICVADVQDVLNSMFGDTLPREGALESSDGLPVEDSINSNQGSNSATD
ADDGHDAAGENGHVHEEVDKPETEENLIL*

mRNA from alignment at ScGOVlb_647:340479..342368+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi13840.t1 ID=Gvermi13840.t1|Name=Gvermi13840.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1890bp|location=Sequence derived from alignment at ScGOVlb_647:340479..342368+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGGTCGAGGTTCTCGGGGAACAAGAGAGACCTCCTGATTCCAATTC
GTCTTCCGGGCCTTTGGATCCCGAGGCAGACGCTGAGGAGGCACTGAAGG
CGATCTGCAAGTTTGTCCTGAACGACTTGCCCGCAGACGCTCCTTCATGC
GAGAAATGGCATGGACTGCACGCCTACATTGAAGAACTTTGCGGGTACAG
TATCGAAAGGCTCTCGCGTGAGCCCGACGATCTCAACTCTGCATGCATTC
GATTGAAGAACGAGCTCGAAGACGTTGCGTGTGGCAACTACCGAGCGCTG
ATAGAAAGTTTCGAATGTGCTGGAGCGGTCCGGAATGGCGTCGCAGACGT
GCGCTCCAGACTTGACGAACTGATCAATTCTCTGCCAAAGTTGGCTGACG
CCACCCGCCAGTTTTCTGCGAGCGTCATGGAAAAGCAGCGCGAGAGGGAG
AGCAGATTGCGCGCCATAACTGAACATCGGGCTGTAGCGGACATTGTGGA
AATGCCAAGACTGATGACAACGCTGGTGAGAGCCGAGTTGTATGACGAGG
CTTTGGAATTGCGCGAATGTGCGTTGAAGCTTCACGCCATACATAGCGAT
GAAATTCTTATTCGGCACGTCTGTGAGGAAATGGATGTTCTCACGCAGCA
AATGGTTCTTCAACTGCTTGTGCTCTTGCGGAACCCCATACAGTTGCCCA
TGTGCTTGCGAATAGTCGGCTTTCTTCGTCGCCTCGATGTGTTCTCGGAA
TGCAGGTTACGAATGCTATTTTTGCACTGTCGGGGCGAATGGATGAGAAA
CGGAATGGATACTTCGACGGCAAACACAAGACAAGCGGAGCTGGTTAGTC
TCAGCGATAACATGAGGTCCATGATGTTTGAAATTATCACACAGTATAGA
GCGGTGTTTAATGATGACATCGAAGACGGAAATGAAGAACTTGAAAATGG
TTCATCCGCTCGATCTGGAACATCTTACTCACATTCTTCCTCAATTCTTT
TTGATTGGACATCGGCATCCGTTTTGGAGTATTTGAATAAGCTTAGAAGT
GGTATAAAGAATGTCAAAGATGGCGCAGCATTGAACACAATTCTTCAGCA
AGCCATGTACTGCGGCCAATCTCTGGGTCGAGTTGGAGCTGATTTCCGAG
CTACCCTTCCACTAATGTTTGAAGAGTCTGTGATGAATATATACTGTTCT
CATCTCAACGCGGCCTTGCGACAATTCGAAATTATGATAGAAGACAACCG
TTGGGCTCCTGTCGGATCGTCAGCTCTGAGAAAGGAGAGGGGACAGCTCG
GAAGTGGTTACAAGAACGATTCTCAGGACAGGATTGAAATCCCACCAAGC
AATGAATATGATCCCCCTCTCGCAATTCTTGACAGTCCACCCCTTGCGGT
TTTTATGAATGGTATTCTTGCTGCTTTCAACGACTTGAGACTGTGCGCCC
CAGTTTCACTCGGGTCGCAACTTGGAAAGGTACTCCAAGAGACCCTCATA
AGTTCCGGAGATTTCATGACAGCTATTGGCGGCCCAGGCGGTGCGTTCCT
GAAAAGGTCGGACAGGCCGCATTACGTATCTATGGCACTTTCTTTGCGTG
ATTTGTGTGTGCCATTCCTTGCGAAGTGTTTAGAGTATTGTATGGACTCA
ACTGGATTAATATGTGTTGCAGATGTTCAAGATGTGTTGAACTCAATGTT
TGGAGACACACTACCTAGGGAGGGGGCACTTGAAAGTTCTGACGGACTAC
CAGTCGAGGATTCAATAAACTCTAACCAGGGTTCTAACTCAGCAACTGAT
GCAGATGACGGTCACGATGCAGCGGGAGAAAATGGCCATGTTCACGAAGA
AGTTGACAAACCTGAGACAGAAGAAAACCTGATTCTTTGA

Coding sequence (CDS) from alignment at ScGOVlb_647:340479..342368+

>Gvermi13840.t1 ID=Gvermi13840.t1|Name=Gvermi13840.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1890bp|location=Sequence derived from alignment at ScGOVlb_647:340479..342368+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGGTCGAGGTTCTCGGGGAACAAGAGAGACCTCCTGATTCCAATTC
GTCTTCCGGGCCTTTGGATCCCGAGGCAGACGCTGAGGAGGCACTGAAGG
CGATCTGCAAGTTTGTCCTGAACGACTTGCCCGCAGACGCTCCTTCATGC
GAGAAATGGCATGGACTGCACGCCTACATTGAAGAACTTTGCGGGTACAG
TATCGAAAGGCTCTCGCGTGAGCCCGACGATCTCAACTCTGCATGCATTC
GATTGAAGAACGAGCTCGAAGACGTTGCGTGTGGCAACTACCGAGCGCTG
ATAGAAAGTTTCGAATGTGCTGGAGCGGTCCGGAATGGCGTCGCAGACGT
GCGCTCCAGACTTGACGAACTGATCAATTCTCTGCCAAAGTTGGCTGACG
CCACCCGCCAGTTTTCTGCGAGCGTCATGGAAAAGCAGCGCGAGAGGGAG
AGCAGATTGCGCGCCATAACTGAACATCGGGCTGTAGCGGACATTGTGGA
AATGCCAAGACTGATGACAACGCTGGTGAGAGCCGAGTTGTATGACGAGG
CTTTGGAATTGCGCGAATGTGCGTTGAAGCTTCACGCCATACATAGCGAT
GAAATTCTTATTCGGCACGTCTGTGAGGAAATGGATGTTCTCACGCAGCA
AATGGTTCTTCAACTGCTTGTGCTCTTGCGGAACCCCATACAGTTGCCCA
TGTGCTTGCGAATAGTCGGCTTTCTTCGTCGCCTCGATGTGTTCTCGGAA
TGCAGGTTACGAATGCTATTTTTGCACTGTCGGGGCGAATGGATGAGAAA
CGGAATGGATACTTCGACGGCAAACACAAGACAAGCGGAGCTGGTTAGTC
TCAGCGATAACATGAGGTCCATGATGTTTGAAATTATCACACAGTATAGA
GCGGTGTTTAATGATGACATCGAAGACGGAAATGAAGAACTTGAAAATGG
TTCATCCGCTCGATCTGGAACATCTTACTCACATTCTTCCTCAATTCTTT
TTGATTGGACATCGGCATCCGTTTTGGAGTATTTGAATAAGCTTAGAAGT
GGTATAAAGAATGTCAAAGATGGCGCAGCATTGAACACAATTCTTCAGCA
AGCCATGTACTGCGGCCAATCTCTGGGTCGAGTTGGAGCTGATTTCCGAG
CTACCCTTCCACTAATGTTTGAAGAGTCTGTGATGAATATATACTGTTCT
CATCTCAACGCGGCCTTGCGACAATTCGAAATTATGATAGAAGACAACCG
TTGGGCTCCTGTCGGATCGTCAGCTCTGAGAAAGGAGAGGGGACAGCTCG
GAAGTGGTTACAAGAACGATTCTCAGGACAGGATTGAAATCCCACCAAGC
AATGAATATGATCCCCCTCTCGCAATTCTTGACAGTCCACCCCTTGCGGT
TTTTATGAATGGTATTCTTGCTGCTTTCAACGACTTGAGACTGTGCGCCC
CAGTTTCACTCGGGTCGCAACTTGGAAAGGTACTCCAAGAGACCCTCATA
AGTTCCGGAGATTTCATGACAGCTATTGGCGGCCCAGGCGGTGCGTTCCT
GAAAAGGTCGGACAGGCCGCATTACGTATCTATGGCACTTTCTTTGCGTG
ATTTGTGTGTGCCATTCCTTGCGAAGTGTTTAGAGTATTGTATGGACTCA
ACTGGATTAATATGTGTTGCAGATGTTCAAGATGTGTTGAACTCAATGTT
TGGAGACACACTACCTAGGGAGGGGGCACTTGAAAGTTCTGACGGACTAC
CAGTCGAGGATTCAATAAACTCTAACCAGGGTTCTAACTCAGCAACTGAT
GCAGATGACGGTCACGATGCAGCGGGAGAAAATGGCCATGTTCACGAAGA
AGTTGACAAACCTGAGACAGAAGAAAACCTGATTCTTTGA