Gvermi13819.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13819.t1
Unique NameGvermi13819.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length460
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:246545..247924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708147.1
PFAMsMFS_5
Max annot lvl2759|Eukaryota
Evalue5.69e-127
EggNOG OGsKOG4332@1|root,KOG4332@2759|Eukaryota
Descriptionmolybdate ion transmembrane transporter activity
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13819Gvermi13819Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 246545..247924 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13819.t1.stop1Gvermi13819.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 246545..246547 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13819.t1.CDS1Gvermi13819.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 246545..247924 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13819.t1.exon1Gvermi13819.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 246545..247924 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13819.t1.start1Gvermi13819.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 247922..247924 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13819.t1Gvermi13819.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 246545..247924 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13819.t1 ID=Gvermi13819.t1|Name=Gvermi13819.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=460bp
MYGYVFVGLMFLCVIVRTAQWMMESRTESTDGKSSTQNARTPEFNSFQLN
YLIVYLLAVAADWLQGPYVYALYTEYGYGKKEIGQLFIAGFGSSAIFGTF
VGSVADKYGRKFNVIVFVITYALSCITKHSPNFSVLMVGRLLAGIATSIL
FSAFESWLVSEHNSRSFAPSLISETFSKAQFGNAVVAILSGQVAGAAANQ
FGKVAPFDTASLVLGILGVIVLLTWTENYGDSRQSVGGGLKSAWNMMIAD
EKILLVGIIQSCFESAMYLMVFSWTPALQAASDAMQLGEIPHGMIFSSFM
VCIMIGSSLFVFLLKTQPAELFMRNLYILGVMMFTVTAVSSNVWEVYAAL
LGFEVICGLYFPAMGTMRAKYVPEVTRSAIMNYFRVPLNVIVCATLYRNL
ENATVFRLCAVMMAIAVVSQQRLFSVSKVSIGTDDDWTREERAELVEEGL
AANVEEATK*
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spliced messenger RNA

>Gvermi13819.t1 ID=Gvermi13819.t1|Name=Gvermi13819.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1380bp|location=Sequence derived from alignment at ScGOVlb_647:246545..247924- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGGCTACGTTTTTGTCGGGTTGATGTTTCTGTGCGTCATCGTGCG
CACGGCTCAGTGGATGATGGAGTCTCGTACTGAAAGTACAGATGGCAAGT
CAAGCACTCAAAACGCCCGAACTCCGGAATTTAATTCATTCCAACTGAAC
TATCTCATTGTGTATCTGCTGGCTGTAGCTGCAGATTGGTTGCAAGGACC
GTATGTGTACGCCCTTTACACTGAATATGGGTACGGTAAGAAGGAAATTG
GGCAGCTTTTCATAGCCGGGTTCGGTTCCTCCGCCATTTTCGGTACTTTT
GTTGGATCCGTTGCCGACAAGTACGGTCGAAAGTTTAACGTTATTGTATT
TGTTATTACTTACGCCTTGTCTTGTATCACGAAGCATTCACCCAACTTTT
CTGTGCTCATGGTAGGACGTCTTCTTGCTGGAATTGCCACGAGTATCCTT
TTCTCCGCCTTTGAATCATGGCTTGTATCTGAGCACAACAGTCGCTCGTT
TGCCCCCTCTCTTATTTCCGAAACCTTTTCCAAAGCTCAGTTTGGTAATG
CAGTTGTTGCCATTCTCTCAGGGCAAGTTGCAGGAGCCGCTGCCAACCAA
TTTGGAAAAGTGGCTCCGTTCGACACGGCGTCATTAGTTTTAGGAATCCT
TGGTGTCATTGTATTACTTACTTGGACTGAAAACTATGGTGACAGTCGCC
AATCTGTCGGAGGTGGACTGAAGAGCGCATGGAATATGATGATCGCCGAT
GAGAAGATTCTACTTGTGGGCATCATTCAATCCTGTTTCGAGTCCGCCAT
GTACCTAATGGTTTTCAGTTGGACACCGGCCTTGCAAGCTGCGTCAGATG
CTATGCAGCTCGGAGAAATTCCTCATGGCATGATCTTCAGCTCCTTCATG
GTTTGCATCATGATCGGAAGCAGTCTTTTCGTGTTTCTATTAAAGACGCA
ACCGGCTGAGCTGTTCATGCGTAACCTCTACATTTTGGGAGTGATGATGT
TCACGGTTACAGCAGTTTCGAGTAACGTTTGGGAAGTCTACGCGGCTCTC
CTTGGCTTTGAGGTTATATGTGGTCTTTACTTCCCAGCCATGGGGACTAT
GCGGGCAAAATACGTCCCAGAAGTGACAAGGTCTGCGATCATGAACTACT
TCCGGGTACCCCTCAACGTTATTGTATGTGCCACTCTGTATAGAAACTTG
GAGAACGCGACTGTTTTCCGTTTGTGCGCAGTTATGATGGCCATTGCCGT
GGTGAGCCAGCAGAGGTTGTTCAGTGTGTCGAAAGTGTCTATTGGAACAG
ACGACGACTGGACACGTGAAGAAAGGGCAGAACTTGTTGAAGAGGGATTG
GCGGCTAATGTGGAGGAAGCAACCAAATAG
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protein sequence of Gvermi13819.t1

>Gvermi13819.t1 ID=Gvermi13819.t1|Name=Gvermi13819.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=460bp
MYGYVFVGLMFLCVIVRTAQWMMESRTESTDGKSSTQNARTPEFNSFQLN
YLIVYLLAVAADWLQGPYVYALYTEYGYGKKEIGQLFIAGFGSSAIFGTF
VGSVADKYGRKFNVIVFVITYALSCITKHSPNFSVLMVGRLLAGIATSIL
FSAFESWLVSEHNSRSFAPSLISETFSKAQFGNAVVAILSGQVAGAAANQ
FGKVAPFDTASLVLGILGVIVLLTWTENYGDSRQSVGGGLKSAWNMMIAD
EKILLVGIIQSCFESAMYLMVFSWTPALQAASDAMQLGEIPHGMIFSSFM
VCIMIGSSLFVFLLKTQPAELFMRNLYILGVMMFTVTAVSSNVWEVYAAL
LGFEVICGLYFPAMGTMRAKYVPEVTRSAIMNYFRVPLNVIVCATLYRNL
ENATVFRLCAVMMAIAVVSQQRLFSVSKVSIGTDDDWTREERAELVEEGL
AANVEEATK*
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mRNA from alignment at ScGOVlb_647:246545..247924-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13819.t1 ID=Gvermi13819.t1|Name=Gvermi13819.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1380bp|location=Sequence derived from alignment at ScGOVlb_647:246545..247924- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACGGCTACGTTTTTGTCGGGTTGATGTTTCTGTGCGTCATCGTGCG
CACGGCTCAGTGGATGATGGAGTCTCGTACTGAAAGTACAGATGGCAAGT
CAAGCACTCAAAACGCCCGAACTCCGGAATTTAATTCATTCCAACTGAAC
TATCTCATTGTGTATCTGCTGGCTGTAGCTGCAGATTGGTTGCAAGGACC
GTATGTGTACGCCCTTTACACTGAATATGGGTACGGTAAGAAGGAAATTG
GGCAGCTTTTCATAGCCGGGTTCGGTTCCTCCGCCATTTTCGGTACTTTT
GTTGGATCCGTTGCCGACAAGTACGGTCGAAAGTTTAACGTTATTGTATT
TGTTATTACTTACGCCTTGTCTTGTATCACGAAGCATTCACCCAACTTTT
CTGTGCTCATGGTAGGACGTCTTCTTGCTGGAATTGCCACGAGTATCCTT
TTCTCCGCCTTTGAATCATGGCTTGTATCTGAGCACAACAGTCGCTCGTT
TGCCCCCTCTCTTATTTCCGAAACCTTTTCCAAAGCTCAGTTTGGTAATG
CAGTTGTTGCCATTCTCTCAGGGCAAGTTGCAGGAGCCGCTGCCAACCAA
TTTGGAAAAGTGGCTCCGTTCGACACGGCGTCATTAGTTTTAGGAATCCT
TGGTGTCATTGTATTACTTACTTGGACTGAAAACTATGGTGACAGTCGCC
AATCTGTCGGAGGTGGACTGAAGAGCGCATGGAATATGATGATCGCCGAT
GAGAAGATTCTACTTGTGGGCATCATTCAATCCTGTTTCGAGTCCGCCAT
GTACCTAATGGTTTTCAGTTGGACACCGGCCTTGCAAGCTGCGTCAGATG
CTATGCAGCTCGGAGAAATTCCTCATGGCATGATCTTCAGCTCCTTCATG
GTTTGCATCATGATCGGAAGCAGTCTTTTCGTGTTTCTATTAAAGACGCA
ACCGGCTGAGCTGTTCATGCGTAACCTCTACATTTTGGGAGTGATGATGT
TCACGGTTACAGCAGTTTCGAGTAACGTTTGGGAAGTCTACGCGGCTCTC
CTTGGCTTTGAGGTTATATGTGGTCTTTACTTCCCAGCCATGGGGACTAT
GCGGGCAAAATACGTCCCAGAAGTGACAAGGTCTGCGATCATGAACTACT
TCCGGGTACCCCTCAACGTTATTGTATGTGCCACTCTGTATAGAAACTTG
GAGAACGCGACTGTTTTCCGTTTGTGCGCAGTTATGATGGCCATTGCCGT
GGTGAGCCAGCAGAGGTTGTTCAGTGTGTCGAAAGTGTCTATTGGAACAG
ACGACGACTGGACACGTGAAGAAAGGGCAGAACTTGTTGAAGAGGGATTG
GCGGCTAATGTGGAGGAAGCAACCAAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_647:246545..247924-

>Gvermi13819.t1 ID=Gvermi13819.t1|Name=Gvermi13819.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1380bp|location=Sequence derived from alignment at ScGOVlb_647:246545..247924- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACGGCTACGTTTTTGTCGGGTTGATGTTTCTGTGCGTCATCGTGCG
CACGGCTCAGTGGATGATGGAGTCTCGTACTGAAAGTACAGATGGCAAGT
CAAGCACTCAAAACGCCCGAACTCCGGAATTTAATTCATTCCAACTGAAC
TATCTCATTGTGTATCTGCTGGCTGTAGCTGCAGATTGGTTGCAAGGACC
GTATGTGTACGCCCTTTACACTGAATATGGGTACGGTAAGAAGGAAATTG
GGCAGCTTTTCATAGCCGGGTTCGGTTCCTCCGCCATTTTCGGTACTTTT
GTTGGATCCGTTGCCGACAAGTACGGTCGAAAGTTTAACGTTATTGTATT
TGTTATTACTTACGCCTTGTCTTGTATCACGAAGCATTCACCCAACTTTT
CTGTGCTCATGGTAGGACGTCTTCTTGCTGGAATTGCCACGAGTATCCTT
TTCTCCGCCTTTGAATCATGGCTTGTATCTGAGCACAACAGTCGCTCGTT
TGCCCCCTCTCTTATTTCCGAAACCTTTTCCAAAGCTCAGTTTGGTAATG
CAGTTGTTGCCATTCTCTCAGGGCAAGTTGCAGGAGCCGCTGCCAACCAA
TTTGGAAAAGTGGCTCCGTTCGACACGGCGTCATTAGTTTTAGGAATCCT
TGGTGTCATTGTATTACTTACTTGGACTGAAAACTATGGTGACAGTCGCC
AATCTGTCGGAGGTGGACTGAAGAGCGCATGGAATATGATGATCGCCGAT
GAGAAGATTCTACTTGTGGGCATCATTCAATCCTGTTTCGAGTCCGCCAT
GTACCTAATGGTTTTCAGTTGGACACCGGCCTTGCAAGCTGCGTCAGATG
CTATGCAGCTCGGAGAAATTCCTCATGGCATGATCTTCAGCTCCTTCATG
GTTTGCATCATGATCGGAAGCAGTCTTTTCGTGTTTCTATTAAAGACGCA
ACCGGCTGAGCTGTTCATGCGTAACCTCTACATTTTGGGAGTGATGATGT
TCACGGTTACAGCAGTTTCGAGTAACGTTTGGGAAGTCTACGCGGCTCTC
CTTGGCTTTGAGGTTATATGTGGTCTTTACTTCCCAGCCATGGGGACTAT
GCGGGCAAAATACGTCCCAGAAGTGACAAGGTCTGCGATCATGAACTACT
TCCGGGTACCCCTCAACGTTATTGTATGTGCCACTCTGTATAGAAACTTG
GAGAACGCGACTGTTTTCCGTTTGTGCGCAGTTATGATGGCCATTGCCGT
GGTGAGCCAGCAGAGGTTGTTCAGTGTGTCGAAAGTGTCTATTGGAACAG
ACGACGACTGGACACGTGAAGAAAGGGCAGAACTTGTTGAAGAGGGATTG
GCGGCTAATGTGGAGGAAGCAACCAAATAG
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