Gvermi13817.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13817.t1
Unique NameGvermi13817.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length609
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:241874..243700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13817Gvermi13817Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 241874..243700 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13817.t1.stop1Gvermi13817.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 241874..241876 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13817.t1.CDS1Gvermi13817.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 241874..243700 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13817.t1.exon1Gvermi13817.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 241874..243700 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13817.t1.start1Gvermi13817.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 243698..243700 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13817.t1Gvermi13817.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 241874..243700 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13817.t1 ID=Gvermi13817.t1|Name=Gvermi13817.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=609bp
MATATPLDGTPSLRSVRDKYLALLLTGNPASTAPPTQPAPNWTPGQHLPH
APAVHWASPITPPAPTENDVRLAEIAAGLVAAGDAEKRHTDAIRRLVGEL
DRSERKVRHLERRRRASSHVPRESGHRVSVGEAKRNIRFTPRTPRYDVPA
RKAASEDHRRPSHHYDERDVLHHKELDELHSLRKEREQWLKSKERSDKEA
RRLSIMLADIKRNTQRLLEERHSHLKVISRLQDEVSECKRNAALSDVGLK
LGSSRGSNIENVTPPRARGRRDTSPASALRTADAYAEMDPIDIRREPEFE
HLEREWHGHRSIPSSRGRNFHEGEQVPPSPIAQSRREHELREELRLVIEE
NGKLTERISSLELECTELVKRVRFGPTVYARDEEARPVFEEQRIPENPQP
RPSSSMSDSRHELPHQGMKSEVRPLSEPERVVGNTPMREDSHRDDSNASH
SAKNEHEPSALPATDKARSRSLEEGLIKLLEEVDVLEGVSQAIHFERSPS
EADRMQDTLELTELNEGQVSGEVAKSHPSAPDATDSPRQVLQHTVDRLER
IRASLSLKYGKWLEAVANDETPCDETQLSLGSVNTPPKNQEITTGSMNTE
IINKLIEN*
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spliced messenger RNA

>Gvermi13817.t1 ID=Gvermi13817.t1|Name=Gvermi13817.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1827bp|location=Sequence derived from alignment at ScGOVlb_647:241874..243700- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGACGGCGACGCCGCTGGACGGCACGCCCAGTCTGCGCTCCGTGCG
CGACAAGTACTTGGCGTTGCTCCTCACTGGGAATCCCGCCTCCACCGCGC
CGCCCACACAGCCGGCTCCCAACTGGACCCCTGGTCAGCATCTTCCGCAC
GCGCCGGCTGTGCATTGGGCATCTCCCATTACGCCGCCAGCTCCCACGGA
GAACGACGTTCGTCTGGCAGAGATAGCTGCTGGCCTCGTTGCGGCGGGCG
ACGCGGAAAAACGTCACACCGATGCAATTCGCCGTTTAGTCGGCGAGCTG
GATCGGTCAGAGCGGAAAGTTCGGCACTTGGAGAGGCGACGGAGGGCAAG
TTCTCACGTACCCAGGGAAAGTGGACACCGCGTGTCTGTCGGCGAAGCGA
AGAGGAATATCCGTTTCACACCACGAACGCCGAGGTATGATGTGCCGGCC
AGGAAAGCCGCGTCGGAAGACCATCGACGGCCATCCCATCACTATGACGA
GCGCGATGTCCTGCACCACAAAGAGCTCGACGAATTGCATTCACTGCGAA
AAGAAAGAGAACAATGGCTCAAGTCGAAAGAGCGCTCTGACAAGGAAGCT
CGCCGCTTGAGTATAATGTTGGCGGATATCAAAAGGAATACACAGCGGCT
CTTGGAAGAGAGACACAGTCACCTTAAGGTTATCTCGCGTTTGCAGGACG
AAGTCAGCGAGTGCAAACGAAACGCAGCTTTGAGTGACGTCGGCCTCAAG
TTGGGCTCCAGCCGAGGTAGCAACATTGAAAACGTGACCCCTCCACGCGC
CCGGGGCAGAAGAGATACCTCACCCGCGTCAGCACTTCGCACGGCTGATG
CGTATGCCGAGATGGACCCGATTGATATTCGACGCGAACCAGAGTTCGAG
CATTTGGAACGTGAATGGCACGGTCATCGCTCGATTCCTTCATCAAGAGG
GAGAAACTTCCATGAGGGTGAACAGGTTCCGCCATCCCCAATTGCTCAGA
GCAGACGAGAGCATGAGCTAAGAGAAGAATTGCGCCTCGTAATAGAAGAG
AACGGTAAGTTGACGGAGCGAATATCAAGCCTTGAACTGGAGTGTACAGA
GCTCGTGAAGAGAGTTCGCTTCGGTCCGACAGTGTACGCACGAGATGAAG
AAGCCCGCCCGGTTTTCGAAGAGCAACGCATACCCGAGAATCCCCAGCCG
CGACCAAGCTCTTCCATGTCGGATTCCCGGCACGAGCTACCTCACCAGGG
TATGAAATCAGAAGTCCGTCCATTATCAGAGCCCGAGAGGGTTGTTGGCA
ACACACCTATGCGGGAAGACTCCCATAGAGATGATTCGAATGCCAGCCAT
TCTGCGAAAAATGAGCATGAGCCTTCTGCCCTCCCTGCAACCGATAAAGC
TCGATCACGCTCTCTTGAAGAAGGATTAATCAAGTTGTTGGAAGAGGTGG
ATGTTTTGGAAGGTGTGTCCCAAGCCATACACTTTGAAAGGTCCCCTTCC
GAAGCTGACAGAATGCAAGATACATTGGAGTTAACAGAACTGAACGAAGG
TCAAGTGTCAGGTGAGGTGGCAAAGTCTCACCCTTCTGCGCCAGATGCGA
CCGATTCGCCCCGACAAGTGCTTCAGCACACTGTGGACCGCCTTGAACGT
ATTCGCGCGAGTCTTTCACTCAAGTACGGAAAGTGGTTGGAAGCTGTTGC
GAACGACGAGACGCCTTGCGATGAAACACAACTTTCTTTGGGGAGTGTAA
ATACACCTCCAAAGAACCAGGAAATAACAACTGGATCAATGAATACCGAG
ATCATCAATAAACTTATCGAGAACTGA
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protein sequence of Gvermi13817.t1

>Gvermi13817.t1 ID=Gvermi13817.t1|Name=Gvermi13817.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=609bp
MATATPLDGTPSLRSVRDKYLALLLTGNPASTAPPTQPAPNWTPGQHLPH
APAVHWASPITPPAPTENDVRLAEIAAGLVAAGDAEKRHTDAIRRLVGEL
DRSERKVRHLERRRRASSHVPRESGHRVSVGEAKRNIRFTPRTPRYDVPA
RKAASEDHRRPSHHYDERDVLHHKELDELHSLRKEREQWLKSKERSDKEA
RRLSIMLADIKRNTQRLLEERHSHLKVISRLQDEVSECKRNAALSDVGLK
LGSSRGSNIENVTPPRARGRRDTSPASALRTADAYAEMDPIDIRREPEFE
HLEREWHGHRSIPSSRGRNFHEGEQVPPSPIAQSRREHELREELRLVIEE
NGKLTERISSLELECTELVKRVRFGPTVYARDEEARPVFEEQRIPENPQP
RPSSSMSDSRHELPHQGMKSEVRPLSEPERVVGNTPMREDSHRDDSNASH
SAKNEHEPSALPATDKARSRSLEEGLIKLLEEVDVLEGVSQAIHFERSPS
EADRMQDTLELTELNEGQVSGEVAKSHPSAPDATDSPRQVLQHTVDRLER
IRASLSLKYGKWLEAVANDETPCDETQLSLGSVNTPPKNQEITTGSMNTE
IINKLIEN*
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mRNA from alignment at ScGOVlb_647:241874..243700-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13817.t1 ID=Gvermi13817.t1|Name=Gvermi13817.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1827bp|location=Sequence derived from alignment at ScGOVlb_647:241874..243700- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGACGGCGACGCCGCTGGACGGCACGCCCAGTCTGCGCTCCGTGCG
CGACAAGTACTTGGCGTTGCTCCTCACTGGGAATCCCGCCTCCACCGCGC
CGCCCACACAGCCGGCTCCCAACTGGACCCCTGGTCAGCATCTTCCGCAC
GCGCCGGCTGTGCATTGGGCATCTCCCATTACGCCGCCAGCTCCCACGGA
GAACGACGTTCGTCTGGCAGAGATAGCTGCTGGCCTCGTTGCGGCGGGCG
ACGCGGAAAAACGTCACACCGATGCAATTCGCCGTTTAGTCGGCGAGCTG
GATCGGTCAGAGCGGAAAGTTCGGCACTTGGAGAGGCGACGGAGGGCAAG
TTCTCACGTACCCAGGGAAAGTGGACACCGCGTGTCTGTCGGCGAAGCGA
AGAGGAATATCCGTTTCACACCACGAACGCCGAGGTATGATGTGCCGGCC
AGGAAAGCCGCGTCGGAAGACCATCGACGGCCATCCCATCACTATGACGA
GCGCGATGTCCTGCACCACAAAGAGCTCGACGAATTGCATTCACTGCGAA
AAGAAAGAGAACAATGGCTCAAGTCGAAAGAGCGCTCTGACAAGGAAGCT
CGCCGCTTGAGTATAATGTTGGCGGATATCAAAAGGAATACACAGCGGCT
CTTGGAAGAGAGACACAGTCACCTTAAGGTTATCTCGCGTTTGCAGGACG
AAGTCAGCGAGTGCAAACGAAACGCAGCTTTGAGTGACGTCGGCCTCAAG
TTGGGCTCCAGCCGAGGTAGCAACATTGAAAACGTGACCCCTCCACGCGC
CCGGGGCAGAAGAGATACCTCACCCGCGTCAGCACTTCGCACGGCTGATG
CGTATGCCGAGATGGACCCGATTGATATTCGACGCGAACCAGAGTTCGAG
CATTTGGAACGTGAATGGCACGGTCATCGCTCGATTCCTTCATCAAGAGG
GAGAAACTTCCATGAGGGTGAACAGGTTCCGCCATCCCCAATTGCTCAGA
GCAGACGAGAGCATGAGCTAAGAGAAGAATTGCGCCTCGTAATAGAAGAG
AACGGTAAGTTGACGGAGCGAATATCAAGCCTTGAACTGGAGTGTACAGA
GCTCGTGAAGAGAGTTCGCTTCGGTCCGACAGTGTACGCACGAGATGAAG
AAGCCCGCCCGGTTTTCGAAGAGCAACGCATACCCGAGAATCCCCAGCCG
CGACCAAGCTCTTCCATGTCGGATTCCCGGCACGAGCTACCTCACCAGGG
TATGAAATCAGAAGTCCGTCCATTATCAGAGCCCGAGAGGGTTGTTGGCA
ACACACCTATGCGGGAAGACTCCCATAGAGATGATTCGAATGCCAGCCAT
TCTGCGAAAAATGAGCATGAGCCTTCTGCCCTCCCTGCAACCGATAAAGC
TCGATCACGCTCTCTTGAAGAAGGATTAATCAAGTTGTTGGAAGAGGTGG
ATGTTTTGGAAGGTGTGTCCCAAGCCATACACTTTGAAAGGTCCCCTTCC
GAAGCTGACAGAATGCAAGATACATTGGAGTTAACAGAACTGAACGAAGG
TCAAGTGTCAGGTGAGGTGGCAAAGTCTCACCCTTCTGCGCCAGATGCGA
CCGATTCGCCCCGACAAGTGCTTCAGCACACTGTGGACCGCCTTGAACGT
ATTCGCGCGAGTCTTTCACTCAAGTACGGAAAGTGGTTGGAAGCTGTTGC
GAACGACGAGACGCCTTGCGATGAAACACAACTTTCTTTGGGGAGTGTAA
ATACACCTCCAAAGAACCAGGAAATAACAACTGGATCAATGAATACCGAG
ATCATCAATAAACTTATCGAGAACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_647:241874..243700-

>Gvermi13817.t1 ID=Gvermi13817.t1|Name=Gvermi13817.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1827bp|location=Sequence derived from alignment at ScGOVlb_647:241874..243700- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGACGGCGACGCCGCTGGACGGCACGCCCAGTCTGCGCTCCGTGCG
CGACAAGTACTTGGCGTTGCTCCTCACTGGGAATCCCGCCTCCACCGCGC
CGCCCACACAGCCGGCTCCCAACTGGACCCCTGGTCAGCATCTTCCGCAC
GCGCCGGCTGTGCATTGGGCATCTCCCATTACGCCGCCAGCTCCCACGGA
GAACGACGTTCGTCTGGCAGAGATAGCTGCTGGCCTCGTTGCGGCGGGCG
ACGCGGAAAAACGTCACACCGATGCAATTCGCCGTTTAGTCGGCGAGCTG
GATCGGTCAGAGCGGAAAGTTCGGCACTTGGAGAGGCGACGGAGGGCAAG
TTCTCACGTACCCAGGGAAAGTGGACACCGCGTGTCTGTCGGCGAAGCGA
AGAGGAATATCCGTTTCACACCACGAACGCCGAGGTATGATGTGCCGGCC
AGGAAAGCCGCGTCGGAAGACCATCGACGGCCATCCCATCACTATGACGA
GCGCGATGTCCTGCACCACAAAGAGCTCGACGAATTGCATTCACTGCGAA
AAGAAAGAGAACAATGGCTCAAGTCGAAAGAGCGCTCTGACAAGGAAGCT
CGCCGCTTGAGTATAATGTTGGCGGATATCAAAAGGAATACACAGCGGCT
CTTGGAAGAGAGACACAGTCACCTTAAGGTTATCTCGCGTTTGCAGGACG
AAGTCAGCGAGTGCAAACGAAACGCAGCTTTGAGTGACGTCGGCCTCAAG
TTGGGCTCCAGCCGAGGTAGCAACATTGAAAACGTGACCCCTCCACGCGC
CCGGGGCAGAAGAGATACCTCACCCGCGTCAGCACTTCGCACGGCTGATG
CGTATGCCGAGATGGACCCGATTGATATTCGACGCGAACCAGAGTTCGAG
CATTTGGAACGTGAATGGCACGGTCATCGCTCGATTCCTTCATCAAGAGG
GAGAAACTTCCATGAGGGTGAACAGGTTCCGCCATCCCCAATTGCTCAGA
GCAGACGAGAGCATGAGCTAAGAGAAGAATTGCGCCTCGTAATAGAAGAG
AACGGTAAGTTGACGGAGCGAATATCAAGCCTTGAACTGGAGTGTACAGA
GCTCGTGAAGAGAGTTCGCTTCGGTCCGACAGTGTACGCACGAGATGAAG
AAGCCCGCCCGGTTTTCGAAGAGCAACGCATACCCGAGAATCCCCAGCCG
CGACCAAGCTCTTCCATGTCGGATTCCCGGCACGAGCTACCTCACCAGGG
TATGAAATCAGAAGTCCGTCCATTATCAGAGCCCGAGAGGGTTGTTGGCA
ACACACCTATGCGGGAAGACTCCCATAGAGATGATTCGAATGCCAGCCAT
TCTGCGAAAAATGAGCATGAGCCTTCTGCCCTCCCTGCAACCGATAAAGC
TCGATCACGCTCTCTTGAAGAAGGATTAATCAAGTTGTTGGAAGAGGTGG
ATGTTTTGGAAGGTGTGTCCCAAGCCATACACTTTGAAAGGTCCCCTTCC
GAAGCTGACAGAATGCAAGATACATTGGAGTTAACAGAACTGAACGAAGG
TCAAGTGTCAGGTGAGGTGGCAAAGTCTCACCCTTCTGCGCCAGATGCGA
CCGATTCGCCCCGACAAGTGCTTCAGCACACTGTGGACCGCCTTGAACGT
ATTCGCGCGAGTCTTTCACTCAAGTACGGAAAGTGGTTGGAAGCTGTTGC
GAACGACGAGACGCCTTGCGATGAAACACAACTTTCTTTGGGGAGTGTAA
ATACACCTCCAAAGAACCAGGAAATAACAACTGGATCAATGAATACCGAG
ATCATCAATAAACTTATCGAGAACTGA
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