Gvermi13815.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13815.t1
Unique NameGvermi13815.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length331
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:235590..236582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707856.1
Preferred nameSTX16
PFAMsSNARE,Syntaxin
Max annot lvl2759|Eukaryota
KEGG koko:K08489,ko:K09611
KEGG Pathwayko04130,map04130
GOsGO:0000139,GO:0000149,GO:0000323,GO:0001505,GO:0002790,GO:0002831,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005773,GO:0005794,GO:0005795,GO:0005802,GO:0005829,GO:0005886,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006665,GO:0006673,GO:0006675,GO:0006687,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006836,GO:0006886,GO:0006887,GO:0006892,GO:0006896,GO:0006897,GO:0006904,GO:0006906,GO:0006996,GO:0007030,GO:0007034,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0008104,GO:0008150,GO:0008152,GO:0009306,GO:0009987,GO:0010008,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016079,GO:0016081,GO:0016192,GO:0016197,GO:0016482,GO:0017156,GO:0019637,GO:0019905,GO:0022406,GO:0023052,GO:0023061,GO:0031090,GO:0031201,GO:0031224,GO:0031300,GO:0031301,GO:0031302,GO:0031303,GO:0031347,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032101,GO:0032258,GO:0032527,GO:0032588,GO:0032940,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042147,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043900,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048278,GO:0048284,GO:0048471,GO:0048489,GO:0048583,GO:0050789,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072665,GO:0080134,GO:0090161,GO:0090174,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098796,GO:0098805,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0140029,GO:0140056,GO:1900150,GO:1901135,GO:1901564,GO:1903509
Evalue1.25e-20
EggNOG OGsCOG5325@1|root,KOG0809@2759|Eukaryota
DescriptionSNAP receptor activity
COG categoryU
BRITEko00000,ko00001,ko01000,ko01002,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13815Gvermi13815Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 235590..236582 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13815.t1.start1Gvermi13815.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 235590..235592 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13815.t1.CDS1Gvermi13815.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 235590..236582 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13815.t1.exon1Gvermi13815.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 235590..236582 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13815.t1.stop1Gvermi13815.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 236580..236582 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13815.t1Gvermi13815.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 235590..236582 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13815.t1 ID=Gvermi13815.t1|Name=Gvermi13815.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=331bp
MASRDRTPLFLRYRAEANALHAAPQPSPRPHRRAEPARLAARPAAAPRRP
HVRPHWHYAHADLKGDLAEMRPMLAHLAALYAKHLLPSFGDVDTSDLEHH
IRLRSVRLTQMLRAAEHKLRAVAAPPRPAPAAPAAPRPAERQILRNMQAR
FAGPLQHLSVAFRRKQKAYLQKLRDMRHALGAQPNPPAHAPDESAHAAAA
AAAAAAAAAADDDDAAPPHAPAQQLAQLPPVERAPALAQQRARELKHVAA
SVNDLAALVGDLAGLVVDQGTVLDRVDYNLEHVSAHTFGALRELRITDAA
HRKRHALCCIIVLSVACALMFIVLVFKWTS*
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spliced messenger RNA

>Gvermi13815.t1 ID=Gvermi13815.t1|Name=Gvermi13815.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=993bp|location=Sequence derived from alignment at ScGOVlb_647:235590..236582+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCGCGCGATCGCACGCCGCTGTTCCTGCGCTACCGCGCGGAGGC
CAACGCGCTGCACGCCGCCCCGCAGCCCTCGCCGCGCCCCCACCGCCGCG
CCGAGCCCGCCCGGCTCGCCGCCCGCCCCGCCGCCGCCCCGCGCCGCCCG
CACGTGCGCCCGCACTGGCACTACGCCCACGCCGACCTCAAGGGCGACCT
CGCCGAGATGCGCCCCATGCTGGCCCACCTCGCCGCCCTCTACGCCAAGC
ACCTGCTCCCGTCCTTTGGCGACGTCGACACCTCCGACCTCGAGCACCAC
ATCCGCCTGCGCTCCGTGCGCCTCACCCAAATGCTGCGCGCCGCCGAGCA
CAAGCTGcgcgccgtcgccgcgcccccgcgccccgcccccgccgcccccg
ccgcgccgcgccccgcGGAGCGCCAGATCCTGCGCAACATGCAGGCCCGC
TTCGCAGGCCCGCTGCAGCACCTCTCCGTCGCCTTCCGCCGCAAGCAGAA
GGCCTACCTGCAAAAGCTGcgcgacatgcgccacgcgctcggcgcccagc
ccaacccgcccgcgcATGCCCCTGACGAAAGCGCCCACGCTgccgccgcc
gccgccgccgccgccgccgccgccgccgcTGACGACGACGATGCGGCGCC
GCCGCACGCGCCCGCGCAGCAGCTCGCGCAGCTGCCGCCCGTCGAGCGCG
CGCCCGCGCTCGCGCAGCAGCGCGCGCGCGAGCTCAAGCACGTCGCCGCC
AGCGTCAACGACCTGGCCGCGCTCGTCGGCGACCTGGCCGGCCTCGTCGT
CGACCAGGGCACCGTGCTCGACCGCGTCGACTACAACCTGGAGCACGTCA
GCGCCCACACCTTCGGCGCCCTCAGAGAGCTCCGCATCACCGACGCCGCC
CACCGCAAGCGCCACGCCCTTTGCTGCATCATCGTCTTGTCCGTCGCCTG
CGCCCTCATGTTTATCGTTCTCGTCTTCAAGTGGACGTCGTAG
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protein sequence of Gvermi13815.t1

>Gvermi13815.t1 ID=Gvermi13815.t1|Name=Gvermi13815.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=331bp
MASRDRTPLFLRYRAEANALHAAPQPSPRPHRRAEPARLAARPAAAPRRP
HVRPHWHYAHADLKGDLAEMRPMLAHLAALYAKHLLPSFGDVDTSDLEHH
IRLRSVRLTQMLRAAEHKLRAVAAPPRPAPAAPAAPRPAERQILRNMQAR
FAGPLQHLSVAFRRKQKAYLQKLRDMRHALGAQPNPPAHAPDESAHAAAA
AAAAAAAAAADDDDAAPPHAPAQQLAQLPPVERAPALAQQRARELKHVAA
SVNDLAALVGDLAGLVVDQGTVLDRVDYNLEHVSAHTFGALRELRITDAA
HRKRHALCCIIVLSVACALMFIVLVFKWTS*
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mRNA from alignment at ScGOVlb_647:235590..236582+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13815.t1 ID=Gvermi13815.t1|Name=Gvermi13815.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=993bp|location=Sequence derived from alignment at ScGOVlb_647:235590..236582+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGTCGCGCGATCGCACGCCGCTGTTCCTGCGCTACCGCGCGGAGGC
CAACGCGCTGCACGCCGCCCCGCAGCCCTCGCCGCGCCCCCACCGCCGCG
CCGAGCCCGCCCGGCTCGCCGCCCGCCCCGCCGCCGCCCCGCGCCGCCCG
CACGTGCGCCCGCACTGGCACTACGCCCACGCCGACCTCAAGGGCGACCT
CGCCGAGATGCGCCCCATGCTGGCCCACCTCGCCGCCCTCTACGCCAAGC
ACCTGCTCCCGTCCTTTGGCGACGTCGACACCTCCGACCTCGAGCACCAC
ATCCGCCTGCGCTCCGTGCGCCTCACCCAAATGCTGCGCGCCGCCGAGCA
CAAGCTGcgcgccgtcgccgcgcccccgcgccccgcccccgccgcccccg
ccgcgccgcgccccgcGGAGCGCCAGATCCTGCGCAACATGCAGGCCCGC
TTCGCAGGCCCGCTGCAGCACCTCTCCGTCGCCTTCCGCCGCAAGCAGAA
GGCCTACCTGCAAAAGCTGcgcgacatgcgccacgcgctcggcgcccagc
ccaacccgcccgcgcATGCCCCTGACGAAAGCGCCCACGCTgccgccgcc
gccgccgccgccgccgccgccgccgccgcTGACGACGACGATGCGGCGCC
GCCGCACGCGCCCGCGCAGCAGCTCGCGCAGCTGCCGCCCGTCGAGCGCG
CGCCCGCGCTCGCGCAGCAGCGCGCGCGCGAGCTCAAGCACGTCGCCGCC
AGCGTCAACGACCTGGCCGCGCTCGTCGGCGACCTGGCCGGCCTCGTCGT
CGACCAGGGCACCGTGCTCGACCGCGTCGACTACAACCTGGAGCACGTCA
GCGCCCACACCTTCGGCGCCCTCAGAGAGCTCCGCATCACCGACGCCGCC
CACCGCAAGCGCCACGCCCTTTGCTGCATCATCGTCTTGTCCGTCGCCTG
CGCCCTCATGTTTATCGTTCTCGTCTTCAAGTGGACGTCGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_647:235590..236582+

>Gvermi13815.t1 ID=Gvermi13815.t1|Name=Gvermi13815.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=993bp|location=Sequence derived from alignment at ScGOVlb_647:235590..236582+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGTCGCGCGATCGCACGCCGCTGTTCCTGCGCTACCGCGCGGAGGC
CAACGCGCTGCACGCCGCCCCGCAGCCCTCGCCGCGCCCCCACCGCCGCG
CCGAGCCCGCCCGGCTCGCCGCCCGCCCCGCCGCCGCCCCGCGCCGCCCG
CACGTGCGCCCGCACTGGCACTACGCCCACGCCGACCTCAAGGGCGACCT
CGCCGAGATGCGCCCCATGCTGGCCCACCTCGCCGCCCTCTACGCCAAGC
ACCTGCTCCCGTCCTTTGGCGACGTCGACACCTCCGACCTCGAGCACCAC
ATCCGCCTGCGCTCCGTGCGCCTCACCCAAATGCTGCGCGCCGCCGAGCA
CAAGCTGcgcgccgtcgccgcgcccccgcgccccgcccccgccgcccccg
ccgcgccgcgccccgcGGAGCGCCAGATCCTGCGCAACATGCAGGCCCGC
TTCGCAGGCCCGCTGCAGCACCTCTCCGTCGCCTTCCGCCGCAAGCAGAA
GGCCTACCTGCAAAAGCTGcgcgacatgcgccacgcgctcggcgcccagc
ccaacccgcccgcgcATGCCCCTGACGAAAGCGCCCACGCTgccgccgcc
gccgccgccgccgccgccgccgccgccgcTGACGACGACGATGCGGCGCC
GCCGCACGCGCCCGCGCAGCAGCTCGCGCAGCTGCCGCCCGTCGAGCGCG
CGCCCGCGCTCGCGCAGCAGCGCGCGCGCGAGCTCAAGCACGTCGCCGCC
AGCGTCAACGACCTGGCCGCGCTCGTCGGCGACCTGGCCGGCCTCGTCGT
CGACCAGGGCACCGTGCTCGACCGCGTCGACTACAACCTGGAGCACGTCA
GCGCCCACACCTTCGGCGCCCTCAGAGAGCTCCGCATCACCGACGCCGCC
CACCGCAAGCGCCACGCCCTTTGCTGCATCATCGTCTTGTCCGTCGCCTG
CGCCCTCATGTTTATCGTTCTCGTCTTCAAGTGGACGTCGTAG
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