Gvermi13807.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13807.t1
Unique NameGvermi13807.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length298
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:202679..203572 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog79684.XP_005346870.1
Preferred nameALKBH8
PFAMs2OG-FeII_Oxy_2,DUF1891,Methyltransf_11,RRM_1
Max annot lvl33208|Metazoa
KEGG koko:K10770
GOsGO:0000049,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008198,GO:0008270,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016300,GO:0016491,GO:0016604,GO:0016705,GO:0016706,GO:0016740,GO:0016741,GO:0030488,GO:0031974,GO:0031981,GO:0032259,GO:0033554,GO:0034470,GO:0034641,GO:0034660,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051213,GO:0051716,GO:0055114,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:0140101,GO:1901360,GO:1901363
Evalue2.38e-44
EggNOG OGsCOG0500@1|root,COG3145@1|root,KOG1331@2759|Eukaryota,KOG4176@2759|Eukaryota,38HZD@33154|Opisthokonta,3BHFK@33208|Metazoa,3CS46@33213|Bilateria,486C0@7711|Chordata,49265@7742|Vertebrata,3JBJI@40674|Mammalia,35IDQ@314146|Euarchontoglires,4PWD8@9989|Rodentia
EC2.1.1.229
DescriptionDomain of unknown function (DUF1891)
COG categoryA
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13807Gvermi13807Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 202679..203572 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13807.t1.stop1Gvermi13807.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 202679..202681 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13807.t1.CDS1Gvermi13807.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 202679..203572 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13807.t1.exon1Gvermi13807.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 202679..203572 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13807.t1.start1Gvermi13807.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 203570..203572 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13807.t1Gvermi13807.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 202679..203572 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13807.t1 ID=Gvermi13807.t1|Name=Gvermi13807.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=298bp
MAPRPPARRSAQRTRAAPPAHHAAAAHFEKRHVNDVYDLIAAHFASTRHA
PWPRVNAFLAALPPASVLADVGCGNGKYVAVVQRAAVAHHVVAVDLCAAL
LRHARRRPAAAAHPAATCDLAVAHALHLPFADHTFDAALNIAVVHHFATA
RRRIRALAETVRILAPGATALIYVWALHGSHRPDPDPDPDPDPDPDPDPD
PHPDPDPDPHPDPDPDPGPDRHARVPPQDVLVPWHLRHKKQGASDDRILA
DWHVVHQRYYHLYRRGELERELSHVPRAHILHSYYDHQNWCVLLQKR*
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spliced messenger RNA

>Gvermi13807.t1 ID=Gvermi13807.t1|Name=Gvermi13807.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=894bp|location=Sequence derived from alignment at ScGOVlb_647:202679..203572- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGCGTCCGCCCGCGCGCCGCTCGGCACAGCGCACGCGCGCCGC
GCCGCCCGCGCACCACGCCGCCGCCGCCCACTTTGAAAAGCGCCACGTCA
ACGACGTCTACGACCTCATCGCCGCCCACTTCGCCTCCACGCGCCACGCC
CCGTGGCCGCGCGTCAACGCCTTCCTGGCCGCGCTCCCGCCCGCCTCCGT
CCTCGCCGACGTTGGCTGCGGCAACGGCAAGTACGTCGCCGTCGTGCAGC
GCGCCGCCGTCGCCCACCACGTCGTCGCCGTCGACCTGTGCGCCGCCCTG
CTGCGCCACGCGCGCCGCCGCCCCGCAGCCGCCGCCCACCCCGCCGCCAC
CTGCGACCTGGCCGTCGCCCACGCCCTGCACCTGCCCTTTGCCGACCACA
CCTTTGACGCCGCCCTCAACATCGCCGTCGTCCACCACTTTGCCACCGCC
CGCCGCCGCATCCGCGCCCTCGCCGAGACCGTCCGCATCCTCGCCCCGGG
CGCCACCGCCTTGATCTACGTCTGGGCCCTGCACGGCTCCCACCGCCCCG
ACCCCGACCCCGACCCCGACCCCGACCCCGACCCCGACCCCGATCCCGAC
CCCCATCCGGACCCCGATCCCGACCCCCATCCGGACCCCGATCCCGACCC
CGGTCCCGACCGCCACGCGCGCGTCCCGCCGCAGGACGTTCTCGTCCCGT
GGCACCTCCGCCACAAAAAGCAAGGCGCCTCCGACGACCGCATCCTCGCC
GACTGGCATGTTGTCCACCAACGCTACTACCACCTTTACCGACGCGGCGA
GCTGGAGCGCGAGTTAAGCCACGTCCCGCGCGCCCACATCCTGCACTCCT
ACTACGACCATCAAAACTGGTGCGTCCTGCTCCAAAAGCGCTAG
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protein sequence of Gvermi13807.t1

>Gvermi13807.t1 ID=Gvermi13807.t1|Name=Gvermi13807.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=298bp
MAPRPPARRSAQRTRAAPPAHHAAAAHFEKRHVNDVYDLIAAHFASTRHA
PWPRVNAFLAALPPASVLADVGCGNGKYVAVVQRAAVAHHVVAVDLCAAL
LRHARRRPAAAAHPAATCDLAVAHALHLPFADHTFDAALNIAVVHHFATA
RRRIRALAETVRILAPGATALIYVWALHGSHRPDPDPDPDPDPDPDPDPD
PHPDPDPDPHPDPDPDPGPDRHARVPPQDVLVPWHLRHKKQGASDDRILA
DWHVVHQRYYHLYRRGELERELSHVPRAHILHSYYDHQNWCVLLQKR*
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mRNA from alignment at ScGOVlb_647:202679..203572-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13807.t1 ID=Gvermi13807.t1|Name=Gvermi13807.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=894bp|location=Sequence derived from alignment at ScGOVlb_647:202679..203572- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCGCGTCCGCCCGCGCGCCGCTCGGCACAGCGCACGCGCGCCGC
GCCGCCCGCGCACCACGCCGCCGCCGCCCACTTTGAAAAGCGCCACGTCA
ACGACGTCTACGACCTCATCGCCGCCCACTTCGCCTCCACGCGCCACGCC
CCGTGGCCGCGCGTCAACGCCTTCCTGGCCGCGCTCCCGCCCGCCTCCGT
CCTCGCCGACGTTGGCTGCGGCAACGGCAAGTACGTCGCCGTCGTGCAGC
GCGCCGCCGTCGCCCACCACGTCGTCGCCGTCGACCTGTGCGCCGCCCTG
CTGCGCCACGCGCGCCGCCGCCCCGCAGCCGCCGCCCACCCCGCCGCCAC
CTGCGACCTGGCCGTCGCCCACGCCCTGCACCTGCCCTTTGCCGACCACA
CCTTTGACGCCGCCCTCAACATCGCCGTCGTCCACCACTTTGCCACCGCC
CGCCGCCGCATCCGCGCCCTCGCCGAGACCGTCCGCATCCTCGCCCCGGG
CGCCACCGCCTTGATCTACGTCTGGGCCCTGCACGGCTCCCACCGCCCCG
ACCCCGACCCCGACCCCGACCCCGACCCCGACCCCGACCCCGATCCCGAC
CCCCATCCGGACCCCGATCCCGACCCCCATCCGGACCCCGATCCCGACCC
CGGTCCCGACCGCCACGCGCGCGTCCCGCCGCAGGACGTTCTCGTCCCGT
GGCACCTCCGCCACAAAAAGCAAGGCGCCTCCGACGACCGCATCCTCGCC
GACTGGCATGTTGTCCACCAACGCTACTACCACCTTTACCGACGCGGCGA
GCTGGAGCGCGAGTTAAGCCACGTCCCGCGCGCCCACATCCTGCACTCCT
ACTACGACCATCAAAACTGGTGCGTCCTGCTCCAAAAGCGCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_647:202679..203572-

>Gvermi13807.t1 ID=Gvermi13807.t1|Name=Gvermi13807.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=894bp|location=Sequence derived from alignment at ScGOVlb_647:202679..203572- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCGCGTCCGCCCGCGCGCCGCTCGGCACAGCGCACGCGCGCCGC
GCCGCCCGCGCACCACGCCGCCGCCGCCCACTTTGAAAAGCGCCACGTCA
ACGACGTCTACGACCTCATCGCCGCCCACTTCGCCTCCACGCGCCACGCC
CCGTGGCCGCGCGTCAACGCCTTCCTGGCCGCGCTCCCGCCCGCCTCCGT
CCTCGCCGACGTTGGCTGCGGCAACGGCAAGTACGTCGCCGTCGTGCAGC
GCGCCGCCGTCGCCCACCACGTCGTCGCCGTCGACCTGTGCGCCGCCCTG
CTGCGCCACGCGCGCCGCCGCCCCGCAGCCGCCGCCCACCCCGCCGCCAC
CTGCGACCTGGCCGTCGCCCACGCCCTGCACCTGCCCTTTGCCGACCACA
CCTTTGACGCCGCCCTCAACATCGCCGTCGTCCACCACTTTGCCACCGCC
CGCCGCCGCATCCGCGCCCTCGCCGAGACCGTCCGCATCCTCGCCCCGGG
CGCCACCGCCTTGATCTACGTCTGGGCCCTGCACGGCTCCCACCGCCCCG
ACCCCGACCCCGACCCCGACCCCGACCCCGACCCCGACCCCGATCCCGAC
CCCCATCCGGACCCCGATCCCGACCCCCATCCGGACCCCGATCCCGACCC
CGGTCCCGACCGCCACGCGCGCGTCCCGCCGCAGGACGTTCTCGTCCCGT
GGCACCTCCGCCACAAAAAGCAAGGCGCCTCCGACGACCGCATCCTCGCC
GACTGGCATGTTGTCCACCAACGCTACTACCACCTTTACCGACGCGGCGA
GCTGGAGCGCGAGTTAAGCCACGTCCCGCGCGCCCACATCCTGCACTCCT
ACTACGACCATCAAAACTGGTGCGTCCTGCTCCAAAAGCGCTAG
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