Gvermi13806.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13806.t1
Unique NameGvermi13806.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length319
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:201550..202614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709065.1
PFAMsOTU
Max annot lvl2759|Eukaryota
KEGG koko:K13719
KEGG Pathwayko04141,map04141
GOsGO:0003674,GO:0003824,GO:0004843,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0016579,GO:0016787,GO:0019538,GO:0019783,GO:0019941,GO:0023052,GO:0030163,GO:0030433,GO:0030968,GO:0033554,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0036459,GO:0036503,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051603,GO:0051716,GO:0065007,GO:0070011,GO:0070646,GO:0070647,GO:0070887,GO:0071310,GO:0071704,GO:0101005,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901698
Evalue2.59e-59
EggNOG OGsCOG5539@1|root,KOG3288@2759|Eukaryota
Descriptionubiquitin-specific protease activity involved in negative regulation of retrograde protein transport, ER to cytosol
COG categoryO
BRITEko00000,ko00001,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13806Gvermi13806Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 201550..202614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13806.t1Gvermi13806.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 201550..202614 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13806.t1.start1Gvermi13806.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 201550..201552 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13806.t1.CDS1Gvermi13806.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 201550..201649 +
Gvermi13806.t1.CDS2Gvermi13806.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 201758..202614 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13806.t1.exon1Gvermi13806.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 201550..201649 +
Gvermi13806.t1.exon2Gvermi13806.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 201758..202614 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13806.t1.intron1Gvermi13806.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_647 201650..201757 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13806.t1.stop1Gvermi13806.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 202612..202614 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13806.t1 ID=Gvermi13806.t1|Name=Gvermi13806.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=319bp
MKLRVRSSTGVSDLQVDPQCTLGSLKAQLGASSLRSGFPPKAVAADDEQP
VSSVLSHGDVVVVQSVGGSAPARGVDGHGGIQGGARAASTAGTPSIAASS
ILRNGKLVIREVPDDNSCLFRCVNALVGRAAQAAAALRTVVREAVAAQPA
LYGEAFLGRSNAQYQRWIMDDNSWGGAIELSILARHLKMELAAFDVKTMR
LDRYGEGNGFATVGFLIYDGIHYNYVALALSGASRQQQPSRGSSSVWWCE
SDVTQFEVQDAVVVEHVRKLAQGQHDARKYTDTANAQFKCGECGVVLKGE
QQVAEHAKQSGHWQFSER*
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spliced messenger RNA

>Gvermi13806.t1 ID=Gvermi13806.t1|Name=Gvermi13806.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=957bp|location=Sequence derived from alignment at ScGOVlb_647:201550..202614+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACTGCGAGTGCGCTCCAGCACGGGGGTGTCCGACCTGCAGGTGGA
CCCGCAATGCACGCTGGGCTCGCTCAAGGCTCAGCTCGGCGCCTCATCGC
TGCGCAGCGGGTTTCCTCCCAAGGCCGTGGCCGCCGATGACGAGCAGCCC
GTGAGCTCTGTGCTTTCACACGGCGACGTGGTGGTGGTGCAAAGCGTAGG
CGGGTCGGCGCCAGCGCGTGGGGTCGATGGGCACGGCGGCATCCAAGGCG
GGGCGCGTGCGGCGAGCACGGCGGGCACGCCGTCAATCGCGGCGTCGTCC
ATTCTGCGCAACGGCAAGCTGGTGATCCGCGAGGTGCCAGACGACAACTC
GTGTCTGTTCCGATGCGTGAACGCGCTTGTCGggcgtgcggcgcaggcgg
cggcggcgctgcgaacggttgtgcgcgaggcggtggcggcgCAGCCCGCG
CTGTACGGCGAGGCGTTTCTGGGGCGGTCCAACGCGCAGTACCAGCGGTG
GATCATGGACGACAACTCGTGGGGCGGGGCGATCGAGCTATCGATCCTGG
CGCGGCACCTGAAGATGGAGCTGGCGGCGTTCGACGTGAAGACGATGCGG
CTGGACCGGTACGGCGAGGGCAACGGGTTCGCGACGGTGGGGTTTCTGAT
TTATGACGGGATTCATTACAACTACGTGGCGCTGGCGCTTAGCGGGGCGT
CGCGGCAGCAGCAGCCGTCGCGCGGTTCGTCGTCTGTGTGGTGGTGCGAG
TCGGATGTGACGCAGTTTGAAGTGCAGGACGCGGTGGTGGTGGAGCACGT
GCGGAAGCTGGCTCAGGGGCAGCACGACGCGAGAAAGTACACGGACACGG
CGAACGCGCAGTTCAAGTGCGGCGAGTGCGGGGTGGTGCTGAAGGGCGAG
CAGCAGGTGGCGGAGCACGCCAAGCAGAGCGGGCACTGGCAGTTTTCAGA
GCGCtga
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protein sequence of Gvermi13806.t1

>Gvermi13806.t1 ID=Gvermi13806.t1|Name=Gvermi13806.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=319bp
MKLRVRSSTGVSDLQVDPQCTLGSLKAQLGASSLRSGFPPKAVAADDEQP
VSSVLSHGDVVVVQSVGGSAPARGVDGHGGIQGGARAASTAGTPSIAASS
ILRNGKLVIREVPDDNSCLFRCVNALVGRAAQAAAALRTVVREAVAAQPA
LYGEAFLGRSNAQYQRWIMDDNSWGGAIELSILARHLKMELAAFDVKTMR
LDRYGEGNGFATVGFLIYDGIHYNYVALALSGASRQQQPSRGSSSVWWCE
SDVTQFEVQDAVVVEHVRKLAQGQHDARKYTDTANAQFKCGECGVVLKGE
QQVAEHAKQSGHWQFSER*
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mRNA from alignment at ScGOVlb_647:201550..202614+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13806.t1 ID=Gvermi13806.t1|Name=Gvermi13806.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1065bp|location=Sequence derived from alignment at ScGOVlb_647:201550..202614+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAACTGCGAGTGCGCTCCAGCACGGGGGTGTCCGACCTGCAGGTGGA
CCCGCAATGCACGCTGGGCTCGCTCAAGGCTCAGCTCGGCGCCTCATCGC
GTACGTTGGCGATCTCTTTCCTCACGCATTGAAGAGGAGCTGCTAACtgg
tgtgtgttgtgatttttttgttgttgttgtcgtgtgttTGGCTTGGTTGT
ACACGCAGTGCGCAGCGGGTTTCCTCCCAAGGCCGTGGCCGCCGATGACG
AGCAGCCCGTGAGCTCTGTGCTTTCACACGGCGACGTGGTGGTGGTGCAA
AGCGTAGGCGGGTCGGCGCCAGCGCGTGGGGTCGATGGGCACGGCGGCAT
CCAAGGCGGGGCGCGTGCGGCGAGCACGGCGGGCACGCCGTCAATCGCGG
CGTCGTCCATTCTGCGCAACGGCAAGCTGGTGATCCGCGAGGTGCCAGAC
GACAACTCGTGTCTGTTCCGATGCGTGAACGCGCTTGTCGggcgtgcggc
gcaggcggcggcggcgctgcgaacggttgtgcgcgaggcggtggcggcgC
AGCCCGCGCTGTACGGCGAGGCGTTTCTGGGGCGGTCCAACGCGCAGTAC
CAGCGGTGGATCATGGACGACAACTCGTGGGGCGGGGCGATCGAGCTATC
GATCCTGGCGCGGCACCTGAAGATGGAGCTGGCGGCGTTCGACGTGAAGA
CGATGCGGCTGGACCGGTACGGCGAGGGCAACGGGTTCGCGACGGTGGGG
TTTCTGATTTATGACGGGATTCATTACAACTACGTGGCGCTGGCGCTTAG
CGGGGCGTCGCGGCAGCAGCAGCCGTCGCGCGGTTCGTCGTCTGTGTGGT
GGTGCGAGTCGGATGTGACGCAGTTTGAAGTGCAGGACGCGGTGGTGGTG
GAGCACGTGCGGAAGCTGGCTCAGGGGCAGCACGACGCGAGAAAGTACAC
GGACACGGCGAACGCGCAGTTCAAGTGCGGCGAGTGCGGGGTGGTGCTGA
AGGGCGAGCAGCAGGTGGCGGAGCACGCCAAGCAGAGCGGGCACTGGCAG
TTTTCAGAGCGCtga
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Coding sequence (CDS) from alignment at ScGOVlb_647:201550..202614+

>Gvermi13806.t1 ID=Gvermi13806.t1|Name=Gvermi13806.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=957bp|location=Sequence derived from alignment at ScGOVlb_647:201550..202614+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAACTGCGAGTGCGCTCCAGCACGGGGGTGTCCGACCTGCAGGTGGA
CCCGCAATGCACGCTGGGCTCGCTCAAGGCTCAGCTCGGCGCCTCATCGC
TGCGCAGCGGGTTTCCTCCCAAGGCCGTGGCCGCCGATGACGAGCAGCCC
GTGAGCTCTGTGCTTTCACACGGCGACGTGGTGGTGGTGCAAAGCGTAGG
CGGGTCGGCGCCAGCGCGTGGGGTCGATGGGCACGGCGGCATCCAAGGCG
GGGCGCGTGCGGCGAGCACGGCGGGCACGCCGTCAATCGCGGCGTCGTCC
ATTCTGCGCAACGGCAAGCTGGTGATCCGCGAGGTGCCAGACGACAACTC
GTGTCTGTTCCGATGCGTGAACGCGCTTGTCGggcgtgcggcgcaggcgg
cggcggcgctgcgaacggttgtgcgcgaggcggtggcggcgCAGCCCGCG
CTGTACGGCGAGGCGTTTCTGGGGCGGTCCAACGCGCAGTACCAGCGGTG
GATCATGGACGACAACTCGTGGGGCGGGGCGATCGAGCTATCGATCCTGG
CGCGGCACCTGAAGATGGAGCTGGCGGCGTTCGACGTGAAGACGATGCGG
CTGGACCGGTACGGCGAGGGCAACGGGTTCGCGACGGTGGGGTTTCTGAT
TTATGACGGGATTCATTACAACTACGTGGCGCTGGCGCTTAGCGGGGCGT
CGCGGCAGCAGCAGCCGTCGCGCGGTTCGTCGTCTGTGTGGTGGTGCGAG
TCGGATGTGACGCAGTTTGAAGTGCAGGACGCGGTGGTGGTGGAGCACGT
GCGGAAGCTGGCTCAGGGGCAGCACGACGCGAGAAAGTACACGGACACGG
CGAACGCGCAGTTCAAGTGCGGCGAGTGCGGGGTGGTGCTGAAGGGCGAG
CAGCAGGTGGCGGAGCACGCCAAGCAGAGCGGGCACTGGCAGTTTTCAGA
GCGCtga
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