Gvermi13805.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13805.t1
Unique NameGvermi13805.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length565
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:199311..201005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog102107.XP_008221146.1
PFAMsPeptidase_M14
Max annot lvl35493|Streptophyta
GOsGO:0003674,GO:0003824,GO:0004180,GO:0004181,GO:0005575,GO:0005576,GO:0005615,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0016787,GO:0019538,GO:0043170,GO:0044238,GO:0044421,GO:0070011,GO:0071704,GO:0140096,GO:1901564
Evalue2.53e-32
EggNOG OGsCOG2866@1|root,KOG2650@2759|Eukaryota,37I2T@33090|Viridiplantae,3GEGT@35493|Streptophyta,4JFQ2@91835|fabids
DescriptionZn_pept
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13805Gvermi13805Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 199311..201005 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13805.t1.stop1Gvermi13805.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 199311..199313 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13805.t1.CDS1Gvermi13805.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 199311..201005 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13805.t1.exon1Gvermi13805.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 199311..201005 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13805.t1.start1Gvermi13805.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 201003..201005 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13805.t1Gvermi13805.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 199311..201005 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13805.t1 ID=Gvermi13805.t1|Name=Gvermi13805.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=565bp
MRRLSAIVIALLLPCATLCFESLIQAQGELRKDRPVRPLQFAAPDWNLYH
RTDRLLAALISTARSCQRFTANSHLIDTSQSFTPEQPPQSTPITTDSKLP
TSGADGLLYFTIRSRPSPRFSLRPQPSPSTRTVFVFGEEGRDLLTSEISL
RVLTKLCANETFAPPLPPEVELILIPVANPDGRTIAEMGRRCDRTNANDV
EIDRNWPSFWRFEQDQHRESAKTKVSAIRAAVSRRFSRADAVSDDVISPI
TGTHPFSEPESRALRNLVFLLRPSSYVSIRTGAPAMVLPWDCKQGPLPPD
KDKRMSQVIKSVSAAHCNRCKLGSLWNVTGAAKCGTSMDYMYGTMRVPFV
SSWHVYDAAQAPHGDCFRKHNPTSRGAYDRITDNWASAVLNFSLAVHTWT
MLETEQGLEVAEQNASLSAAEATVWRAQAIAKGMPDPESPDLDDAGLRAQ
SNSETSTEKIAKDADLNPVDENEHIKSSSRGPTENSPPLHRAEAAASDNN
AKHKASEADDDEYRFGLLTGWTGAWASLGILCLALFIARRYFFANANKRY
GFRSRGRRLPGKRA*
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spliced messenger RNA

>Gvermi13805.t1 ID=Gvermi13805.t1|Name=Gvermi13805.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1695bp|location=Sequence derived from alignment at ScGOVlb_647:199311..201005- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCGCCTCTCCGCGATTGTTATTGCGTTGCTGCTTCCCTGCGCCAC
GCTGTGCTTTGAGAGCTTGATCCAGGCGCAGGGCGAGCTTCGCAAGGATC
GTCCCGTGCGTCCTTTGCAGTTTGCCGCCCCGGACTGGAATCTGTACCAT
CGAACCGACCGCCTCCTCGCTGCCCTAATCTCCACTGCCCGCTCATGCCA
GCGCTTCACGGCCAATTCACACCTCATCGATACAAGCCAATCTTTCACAC
CGGAACAACCTCCTCAATCCACACCCATCACCACTGACTCAAAATTGCCC
ACCTCTGGCGCCGACGGCCTCTTGTACTTTACCATCCGTTCTCGCCCGTC
TCCGCGCTTCTCCCTGCGCCCGCAGCCCAGCCCATCAACGCGCACTGTGT
TCGTGTTTGGCGAGGAAGGGCGTGACCTGCTTACTTCTGAAATATCCTTA
CGCGTCCTTACCAAGCTCTGTGCGAATGAAACCTTTGCTCCGCCCCTCCC
GCCAGAGGTGGAGCTCATTTTGATCCCTGTAGCCAACCCTGATGGTCGCA
CTATTGCCGAAATGGGCCGTCGCTGCGACCGCACCAATGCCAACGACGTG
GAAATAGACAGAAACTGGCCGTCTTTCTGGCGTTTTGAACAAGACCAACA
CCGCGAAAGCGCCAAGACAAAAGTTTCCGCCATTCGCGCCGCCGTTTCGC
GCCGTTTTTCGCGAGCGGATGCCGTGTCTGACGACGTTATTTCCCCAATC
ACCGGCACGCACCCTTTCTCGGAGCCCGAGTCTCGCGCGCTCAGAAACCT
CGTCTTTCTTTTGCGCCCGTCGAGCTATGTCAGCATTCGAACCGGCGCCC
CCGCCATGGTGTTGCCCTGGGACTGCAAGCAAGGGCCTCTGCCTCCGGAT
AAGGACAAACGAATGTCACAGGTCATTAAGAGCGTGAGCGCGGCTCATTG
TAACCGGTGCAAGCTGGGATCTTTGTGGAACGTAACTGGCGCCGCGAAAT
GCGGAACAAGCATGGACTACATGTATGGCACCATGCGCGTCCCATTCGTG
TCTTCGTGGCATGTTTACGATGCTGCGCAAGCACCACATGGTGATTGCTT
CCGAAAGCACAACCCTACCAGCCGAGGAGCATACGATCGCATCACCGATA
ATTGGGCGAGCGCTGTACTCAATTTCTCGCTCGCAGTGCACACCTGGACG
ATGCTAGAAACTGAGCAAGGACTTGAAGTTGCAGAGCAGAACGCTTCTCT
TAGTGCGGCTGAGGCCACCGTGTGGCGTGCTCAGGCTATCGCTAAAGGAA
TGCCGGATCCGGAAAGTCCCGACCTCGATGACGCCGGCCTTCGCGCTCAA
TCAAACTCAGAAACTAGTACCGAGAAAATCGCAAAAGATGCAGATTTAAA
TCCAGTTGATGAGAACGAACACATTAAGTCTTCTTCACGGGGACCAACGG
AAAACAGCCCCCCTTTGCATCGTGCAGAGGCTGCAGCATCTGACAACAAC
GCCAAACACAAAGCTTCAGAAGCAGACGACGACGAATATCGCTTTGGGTT
GCTTACCGGATGGACTGGAGCATGGGCTTCACTTGGTATTCTATGTCTCG
CCCTATTCATTGCAAGGCGCTACTTCTTCGCGAATGCAAACAAGCGATAC
GGATTCCGTTCTCGAGGCCGGAGACTACCAGGAAAGAGGGCATGA
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protein sequence of Gvermi13805.t1

>Gvermi13805.t1 ID=Gvermi13805.t1|Name=Gvermi13805.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=565bp
MRRLSAIVIALLLPCATLCFESLIQAQGELRKDRPVRPLQFAAPDWNLYH
RTDRLLAALISTARSCQRFTANSHLIDTSQSFTPEQPPQSTPITTDSKLP
TSGADGLLYFTIRSRPSPRFSLRPQPSPSTRTVFVFGEEGRDLLTSEISL
RVLTKLCANETFAPPLPPEVELILIPVANPDGRTIAEMGRRCDRTNANDV
EIDRNWPSFWRFEQDQHRESAKTKVSAIRAAVSRRFSRADAVSDDVISPI
TGTHPFSEPESRALRNLVFLLRPSSYVSIRTGAPAMVLPWDCKQGPLPPD
KDKRMSQVIKSVSAAHCNRCKLGSLWNVTGAAKCGTSMDYMYGTMRVPFV
SSWHVYDAAQAPHGDCFRKHNPTSRGAYDRITDNWASAVLNFSLAVHTWT
MLETEQGLEVAEQNASLSAAEATVWRAQAIAKGMPDPESPDLDDAGLRAQ
SNSETSTEKIAKDADLNPVDENEHIKSSSRGPTENSPPLHRAEAAASDNN
AKHKASEADDDEYRFGLLTGWTGAWASLGILCLALFIARRYFFANANKRY
GFRSRGRRLPGKRA*
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mRNA from alignment at ScGOVlb_647:199311..201005-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13805.t1 ID=Gvermi13805.t1|Name=Gvermi13805.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1695bp|location=Sequence derived from alignment at ScGOVlb_647:199311..201005- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTCGCCTCTCCGCGATTGTTATTGCGTTGCTGCTTCCCTGCGCCAC
GCTGTGCTTTGAGAGCTTGATCCAGGCGCAGGGCGAGCTTCGCAAGGATC
GTCCCGTGCGTCCTTTGCAGTTTGCCGCCCCGGACTGGAATCTGTACCAT
CGAACCGACCGCCTCCTCGCTGCCCTAATCTCCACTGCCCGCTCATGCCA
GCGCTTCACGGCCAATTCACACCTCATCGATACAAGCCAATCTTTCACAC
CGGAACAACCTCCTCAATCCACACCCATCACCACTGACTCAAAATTGCCC
ACCTCTGGCGCCGACGGCCTCTTGTACTTTACCATCCGTTCTCGCCCGTC
TCCGCGCTTCTCCCTGCGCCCGCAGCCCAGCCCATCAACGCGCACTGTGT
TCGTGTTTGGCGAGGAAGGGCGTGACCTGCTTACTTCTGAAATATCCTTA
CGCGTCCTTACCAAGCTCTGTGCGAATGAAACCTTTGCTCCGCCCCTCCC
GCCAGAGGTGGAGCTCATTTTGATCCCTGTAGCCAACCCTGATGGTCGCA
CTATTGCCGAAATGGGCCGTCGCTGCGACCGCACCAATGCCAACGACGTG
GAAATAGACAGAAACTGGCCGTCTTTCTGGCGTTTTGAACAAGACCAACA
CCGCGAAAGCGCCAAGACAAAAGTTTCCGCCATTCGCGCCGCCGTTTCGC
GCCGTTTTTCGCGAGCGGATGCCGTGTCTGACGACGTTATTTCCCCAATC
ACCGGCACGCACCCTTTCTCGGAGCCCGAGTCTCGCGCGCTCAGAAACCT
CGTCTTTCTTTTGCGCCCGTCGAGCTATGTCAGCATTCGAACCGGCGCCC
CCGCCATGGTGTTGCCCTGGGACTGCAAGCAAGGGCCTCTGCCTCCGGAT
AAGGACAAACGAATGTCACAGGTCATTAAGAGCGTGAGCGCGGCTCATTG
TAACCGGTGCAAGCTGGGATCTTTGTGGAACGTAACTGGCGCCGCGAAAT
GCGGAACAAGCATGGACTACATGTATGGCACCATGCGCGTCCCATTCGTG
TCTTCGTGGCATGTTTACGATGCTGCGCAAGCACCACATGGTGATTGCTT
CCGAAAGCACAACCCTACCAGCCGAGGAGCATACGATCGCATCACCGATA
ATTGGGCGAGCGCTGTACTCAATTTCTCGCTCGCAGTGCACACCTGGACG
ATGCTAGAAACTGAGCAAGGACTTGAAGTTGCAGAGCAGAACGCTTCTCT
TAGTGCGGCTGAGGCCACCGTGTGGCGTGCTCAGGCTATCGCTAAAGGAA
TGCCGGATCCGGAAAGTCCCGACCTCGATGACGCCGGCCTTCGCGCTCAA
TCAAACTCAGAAACTAGTACCGAGAAAATCGCAAAAGATGCAGATTTAAA
TCCAGTTGATGAGAACGAACACATTAAGTCTTCTTCACGGGGACCAACGG
AAAACAGCCCCCCTTTGCATCGTGCAGAGGCTGCAGCATCTGACAACAAC
GCCAAACACAAAGCTTCAGAAGCAGACGACGACGAATATCGCTTTGGGTT
GCTTACCGGATGGACTGGAGCATGGGCTTCACTTGGTATTCTATGTCTCG
CCCTATTCATTGCAAGGCGCTACTTCTTCGCGAATGCAAACAAGCGATAC
GGATTCCGTTCTCGAGGCCGGAGACTACCAGGAAAGAGGGCATGA
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Coding sequence (CDS) from alignment at ScGOVlb_647:199311..201005-

>Gvermi13805.t1 ID=Gvermi13805.t1|Name=Gvermi13805.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1695bp|location=Sequence derived from alignment at ScGOVlb_647:199311..201005- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTCGCCTCTCCGCGATTGTTATTGCGTTGCTGCTTCCCTGCGCCAC
GCTGTGCTTTGAGAGCTTGATCCAGGCGCAGGGCGAGCTTCGCAAGGATC
GTCCCGTGCGTCCTTTGCAGTTTGCCGCCCCGGACTGGAATCTGTACCAT
CGAACCGACCGCCTCCTCGCTGCCCTAATCTCCACTGCCCGCTCATGCCA
GCGCTTCACGGCCAATTCACACCTCATCGATACAAGCCAATCTTTCACAC
CGGAACAACCTCCTCAATCCACACCCATCACCACTGACTCAAAATTGCCC
ACCTCTGGCGCCGACGGCCTCTTGTACTTTACCATCCGTTCTCGCCCGTC
TCCGCGCTTCTCCCTGCGCCCGCAGCCCAGCCCATCAACGCGCACTGTGT
TCGTGTTTGGCGAGGAAGGGCGTGACCTGCTTACTTCTGAAATATCCTTA
CGCGTCCTTACCAAGCTCTGTGCGAATGAAACCTTTGCTCCGCCCCTCCC
GCCAGAGGTGGAGCTCATTTTGATCCCTGTAGCCAACCCTGATGGTCGCA
CTATTGCCGAAATGGGCCGTCGCTGCGACCGCACCAATGCCAACGACGTG
GAAATAGACAGAAACTGGCCGTCTTTCTGGCGTTTTGAACAAGACCAACA
CCGCGAAAGCGCCAAGACAAAAGTTTCCGCCATTCGCGCCGCCGTTTCGC
GCCGTTTTTCGCGAGCGGATGCCGTGTCTGACGACGTTATTTCCCCAATC
ACCGGCACGCACCCTTTCTCGGAGCCCGAGTCTCGCGCGCTCAGAAACCT
CGTCTTTCTTTTGCGCCCGTCGAGCTATGTCAGCATTCGAACCGGCGCCC
CCGCCATGGTGTTGCCCTGGGACTGCAAGCAAGGGCCTCTGCCTCCGGAT
AAGGACAAACGAATGTCACAGGTCATTAAGAGCGTGAGCGCGGCTCATTG
TAACCGGTGCAAGCTGGGATCTTTGTGGAACGTAACTGGCGCCGCGAAAT
GCGGAACAAGCATGGACTACATGTATGGCACCATGCGCGTCCCATTCGTG
TCTTCGTGGCATGTTTACGATGCTGCGCAAGCACCACATGGTGATTGCTT
CCGAAAGCACAACCCTACCAGCCGAGGAGCATACGATCGCATCACCGATA
ATTGGGCGAGCGCTGTACTCAATTTCTCGCTCGCAGTGCACACCTGGACG
ATGCTAGAAACTGAGCAAGGACTTGAAGTTGCAGAGCAGAACGCTTCTCT
TAGTGCGGCTGAGGCCACCGTGTGGCGTGCTCAGGCTATCGCTAAAGGAA
TGCCGGATCCGGAAAGTCCCGACCTCGATGACGCCGGCCTTCGCGCTCAA
TCAAACTCAGAAACTAGTACCGAGAAAATCGCAAAAGATGCAGATTTAAA
TCCAGTTGATGAGAACGAACACATTAAGTCTTCTTCACGGGGACCAACGG
AAAACAGCCCCCCTTTGCATCGTGCAGAGGCTGCAGCATCTGACAACAAC
GCCAAACACAAAGCTTCAGAAGCAGACGACGACGAATATCGCTTTGGGTT
GCTTACCGGATGGACTGGAGCATGGGCTTCACTTGGTATTCTATGTCTCG
CCCTATTCATTGCAAGGCGCTACTTCTTCGCGAATGCAAACAAGCGATAC
GGATTCCGTTCTCGAGGCCGGAGACTACCAGGAAAGAGGGCATGA
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