Gvermi13803.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13803.t1
Unique NameGvermi13803.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length138
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:196742..197155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38727.Pavir.Db00549.1.p
PFAMsPAC4
Max annot lvl35493|Streptophyta
KEGG koko:K11878
Evalue1.25e-06
EggNOG OGsCOG0590@1|root,KOG1018@2759|Eukaryota,37UTF@33090|Viridiplantae,3GX7D@35493|Streptophyta,3KZ3P@4447|Liliopsida,3IH9G@38820|Poales
DescriptionProteasome assembly chaperone 4
COG categoryF
BRITEko00000,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13803Gvermi13803Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 196742..197155 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13803.t1.stop1Gvermi13803.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 196742..196744 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13803.t1.CDS1Gvermi13803.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 196742..197155 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13803.t1.exon1Gvermi13803.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 196742..197155 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13803.t1.start1Gvermi13803.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 197153..197155 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13803.t1Gvermi13803.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 196742..197155 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13803.t1 ID=Gvermi13803.t1|Name=Gvermi13803.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=138bp
MQVTAFTDQLADLRMRYQITYMKDSIMVWVQPTTDGSLGSLSCLSVCMGH
KINEEALPSATTLFATNAQIASTSHGFAQKLSMRSGLAVYACVDIPDDAA
VLEDIIFRRVLRELQSHGLTSPVEHENGTRVEAAAHT*
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spliced messenger RNA

>Gvermi13803.t1 ID=Gvermi13803.t1|Name=Gvermi13803.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=414bp|location=Sequence derived from alignment at ScGOVlb_647:196742..197155- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGTGACCGCATTTACCGACCAACTCGCCGATCTACGCATGCGCTA
TCAAATAACTTATATGAAAGACTCCATCATGGTGTGGGTCCAACCCACAA
CCGATGGGTCCCTCGGATCGTTAAGTTGTTTATCCGTCTGCATGGGACAC
AAAATCAACGAAGAAGCGCTGCCATCCGCCACCACTCTATTCGCCACAAA
CGCCCAAATCGCATCAACGAGTCATGGGTTTGCACAGAAACTGTCAATGC
GTTCTGGACTTGCGGTGTATGCATGTGTTGACATTCCAGACGATGCCGCT
GTTTTGGAAGACATCATCTTCAGACGGGTGTTGAGAGAACTACAAAGCCA
CGGTCTGACATCTCCCGTTGAACATGAAAACGGGACGAGGGTGGAAGCAG
CTGCACACACATGA
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protein sequence of Gvermi13803.t1

>Gvermi13803.t1 ID=Gvermi13803.t1|Name=Gvermi13803.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=138bp
MQVTAFTDQLADLRMRYQITYMKDSIMVWVQPTTDGSLGSLSCLSVCMGH
KINEEALPSATTLFATNAQIASTSHGFAQKLSMRSGLAVYACVDIPDDAA
VLEDIIFRRVLRELQSHGLTSPVEHENGTRVEAAAHT*
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mRNA from alignment at ScGOVlb_647:196742..197155-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13803.t1 ID=Gvermi13803.t1|Name=Gvermi13803.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=414bp|location=Sequence derived from alignment at ScGOVlb_647:196742..197155- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAAGTGACCGCATTTACCGACCAACTCGCCGATCTACGCATGCGCTA
TCAAATAACTTATATGAAAGACTCCATCATGGTGTGGGTCCAACCCACAA
CCGATGGGTCCCTCGGATCGTTAAGTTGTTTATCCGTCTGCATGGGACAC
AAAATCAACGAAGAAGCGCTGCCATCCGCCACCACTCTATTCGCCACAAA
CGCCCAAATCGCATCAACGAGTCATGGGTTTGCACAGAAACTGTCAATGC
GTTCTGGACTTGCGGTGTATGCATGTGTTGACATTCCAGACGATGCCGCT
GTTTTGGAAGACATCATCTTCAGACGGGTGTTGAGAGAACTACAAAGCCA
CGGTCTGACATCTCCCGTTGAACATGAAAACGGGACGAGGGTGGAAGCAG
CTGCACACACATGA
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Coding sequence (CDS) from alignment at ScGOVlb_647:196742..197155-

>Gvermi13803.t1 ID=Gvermi13803.t1|Name=Gvermi13803.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=414bp|location=Sequence derived from alignment at ScGOVlb_647:196742..197155- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAAGTGACCGCATTTACCGACCAACTCGCCGATCTACGCATGCGCTA
TCAAATAACTTATATGAAAGACTCCATCATGGTGTGGGTCCAACCCACAA
CCGATGGGTCCCTCGGATCGTTAAGTTGTTTATCCGTCTGCATGGGACAC
AAAATCAACGAAGAAGCGCTGCCATCCGCCACCACTCTATTCGCCACAAA
CGCCCAAATCGCATCAACGAGTCATGGGTTTGCACAGAAACTGTCAATGC
GTTCTGGACTTGCGGTGTATGCATGTGTTGACATTCCAGACGATGCCGCT
GTTTTGGAAGACATCATCTTCAGACGGGTGTTGAGAGAACTACAAAGCCA
CGGTCTGACATCTCCCGTTGAACATGAAAACGGGACGAGGGTGGAAGCAG
CTGCACACACATGA
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