Gvermi13802.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13802.t1
Unique NameGvermi13802.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length468
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:195154..196557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13802Gvermi13802Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 195154..196557 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13802.t1.start1Gvermi13802.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 195154..195156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13802.t1.CDS1Gvermi13802.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 195154..196557 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13802.t1.exon1Gvermi13802.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 195154..196557 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13802.t1.stop1Gvermi13802.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 196555..196557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13802.t1Gvermi13802.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 195154..196557 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13802.t1 ID=Gvermi13802.t1|Name=Gvermi13802.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=468bp
MRSASVDRFPFDPFEPRFPFERRRALDDFPLGLDQHPMHEPFMDELEPPF
PHRHRRRSHFYEDFGAPQFSDQPPRFSIDRAMRFPARTPNIVFMQQRSFV
FNVGSPADSRVPWLQVMDEFDGRRVLYATGNCMQRASQVRLHDDYSGELL
RLTPRKSSTKSRKYASLRVTTFNKYRDPVMTAVSMRDAIGPTNLQGAGPP
PPPPPPPFAYAPNANPYYPPQGAYPYPGPYPMPSYGAPPTGYPGMPAGAP
NAAQPDVTEPQSAPDASGDPYSAPWDAAHQQPQGEVPDYPQPDQSRQPGQ
EYPGPQPQYQHWQGTHYQPSSAYPNQTYPQPGQQPGMYANYMHGFAYQNN
SGRPPFQRWETSDQPMVVAEFFGGEKSLDDIRRSSRDGRRKHPLFRLARN
AGGEKEWVQTPTGRELASITYSSPGSDGFAVEGNSYRVVLQPGVDLTMIT
SAIVSRVVMWAGTDARF*
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spliced messenger RNA

>Gvermi13802.t1 ID=Gvermi13802.t1|Name=Gvermi13802.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1404bp|location=Sequence derived from alignment at ScGOVlb_647:195154..196557+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTCCGCTTCCGTGGACCGCTTCCCGTTTGACCCGTTTGAGCCGCG
TTTTCCCTTCGAGCGCCGGCGCGCCTTGGATGACTTCCCGCTGGGACTTG
ATCAACATCCCATGCACGAGCCTTTCATGGATGAGCTCGAGCCCCCGTTT
CCTCATCGCCATCGTCGTCGCTCGCATTTCTATGAAGATTTTGGAGCGCC
GCAGTTTTCAGATCAGCCCCCACGCTTCTCGATTGATCGTGCGATGCGCT
TCCCGGCACGCACACCGAACATCGTCTTCATGCAGCAGAGGAGCTTCGTT
TTCAACGTCGGTTCCCCTGCAGACAGCCGCGTGCCATGGTTACAGGTCAT
GGATGAATTCGATGGAAGACGCGTGTTGTACGCAACGGGAAACTGTATGC
AGCGAGCCTCCCAAGTACGACTACATGATGACTACTCAGGTGAGCTTCTT
CGTTTAACCCCGCGAAAGAGCTCAACAAAGAGCAGGAAATATGCTTCGTT
ACGCGTCACAACCTTCAACAAATATCGAGATCCCGTCATGACCGCCGTGT
CCATGCGTGACGCTATTGGCCCGACAAATCTTCAGGGAGCGGGtccgcct
ccgcctccgcctccgcctccgTTTGCGTATGCACCTAACGCAAACCCGTA
CTACCCTCCACAGGGCGCCTATCCTTACCCTGGCCCATACCCAATGCCCT
CGTATGGAGCGCCCCCTACCGGTTATCCGGGCATGCCAGCCGGCGCTCCC
AATGCTGCTCAACCGGATGTAACTGAGCCTCAGTCTGCCCCTGATGCAAG
TGGCGATCCATATTCCGCCCCATGGGACGCCGCGCATCAGCAACCACAAG
GAGAGGTGCCAGATTACCCGCAGCCGGACCAATCACGACAGCCTGGACAG
GAATATCCCGGGCCACAACCTCAATATCAACACTGGCAAGGCACGCACTA
TCAACCCAGCTCAGCCTACCCCAATCAGACCTATCCGCAACCTGGGCAAC
AGCCAGGCATGTATGCCAATTATATGCACGGTTTTGCATATCAGAATAAC
AGTGGCCGTCCTCCCTTCCAGAGGTGGGAGACGTCGGACCAGCCGATGGT
GGTCGCCGAATTCTTCGGCGGGGAAAAAAGCTTGGATGACATTCGGAGGT
CAAGTAGAGATGGTCGCCGTAAGCATCCTCTGTTTCGCCTCGCTCGCAAC
GCAGGTGGAGAGAAGGAATGGGTACAAACCCCGACAGGTCGTGAGCTGGC
AAGTATAACGTATTCTAGCCCGGGATCAGATGGTTTTGCTGTCGAAGGAA
ACAGCTATCGCGTCGTTTTGCAACCTGGTGTGGATCTAACGATGATCACC
TCTGCAATCGTTAGCCGAGTCGTCATGTGGGCAGGCACTGATGCAAGGTT
TTAA
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protein sequence of Gvermi13802.t1

>Gvermi13802.t1 ID=Gvermi13802.t1|Name=Gvermi13802.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=468bp
MRSASVDRFPFDPFEPRFPFERRRALDDFPLGLDQHPMHEPFMDELEPPF
PHRHRRRSHFYEDFGAPQFSDQPPRFSIDRAMRFPARTPNIVFMQQRSFV
FNVGSPADSRVPWLQVMDEFDGRRVLYATGNCMQRASQVRLHDDYSGELL
RLTPRKSSTKSRKYASLRVTTFNKYRDPVMTAVSMRDAIGPTNLQGAGPP
PPPPPPPFAYAPNANPYYPPQGAYPYPGPYPMPSYGAPPTGYPGMPAGAP
NAAQPDVTEPQSAPDASGDPYSAPWDAAHQQPQGEVPDYPQPDQSRQPGQ
EYPGPQPQYQHWQGTHYQPSSAYPNQTYPQPGQQPGMYANYMHGFAYQNN
SGRPPFQRWETSDQPMVVAEFFGGEKSLDDIRRSSRDGRRKHPLFRLARN
AGGEKEWVQTPTGRELASITYSSPGSDGFAVEGNSYRVVLQPGVDLTMIT
SAIVSRVVMWAGTDARF*
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mRNA from alignment at ScGOVlb_647:195154..196557+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13802.t1 ID=Gvermi13802.t1|Name=Gvermi13802.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1404bp|location=Sequence derived from alignment at ScGOVlb_647:195154..196557+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCTCCGCTTCCGTGGACCGCTTCCCGTTTGACCCGTTTGAGCCGCG
TTTTCCCTTCGAGCGCCGGCGCGCCTTGGATGACTTCCCGCTGGGACTTG
ATCAACATCCCATGCACGAGCCTTTCATGGATGAGCTCGAGCCCCCGTTT
CCTCATCGCCATCGTCGTCGCTCGCATTTCTATGAAGATTTTGGAGCGCC
GCAGTTTTCAGATCAGCCCCCACGCTTCTCGATTGATCGTGCGATGCGCT
TCCCGGCACGCACACCGAACATCGTCTTCATGCAGCAGAGGAGCTTCGTT
TTCAACGTCGGTTCCCCTGCAGACAGCCGCGTGCCATGGTTACAGGTCAT
GGATGAATTCGATGGAAGACGCGTGTTGTACGCAACGGGAAACTGTATGC
AGCGAGCCTCCCAAGTACGACTACATGATGACTACTCAGGTGAGCTTCTT
CGTTTAACCCCGCGAAAGAGCTCAACAAAGAGCAGGAAATATGCTTCGTT
ACGCGTCACAACCTTCAACAAATATCGAGATCCCGTCATGACCGCCGTGT
CCATGCGTGACGCTATTGGCCCGACAAATCTTCAGGGAGCGGGtccgcct
ccgcctccgcctccgcctccgTTTGCGTATGCACCTAACGCAAACCCGTA
CTACCCTCCACAGGGCGCCTATCCTTACCCTGGCCCATACCCAATGCCCT
CGTATGGAGCGCCCCCTACCGGTTATCCGGGCATGCCAGCCGGCGCTCCC
AATGCTGCTCAACCGGATGTAACTGAGCCTCAGTCTGCCCCTGATGCAAG
TGGCGATCCATATTCCGCCCCATGGGACGCCGCGCATCAGCAACCACAAG
GAGAGGTGCCAGATTACCCGCAGCCGGACCAATCACGACAGCCTGGACAG
GAATATCCCGGGCCACAACCTCAATATCAACACTGGCAAGGCACGCACTA
TCAACCCAGCTCAGCCTACCCCAATCAGACCTATCCGCAACCTGGGCAAC
AGCCAGGCATGTATGCCAATTATATGCACGGTTTTGCATATCAGAATAAC
AGTGGCCGTCCTCCCTTCCAGAGGTGGGAGACGTCGGACCAGCCGATGGT
GGTCGCCGAATTCTTCGGCGGGGAAAAAAGCTTGGATGACATTCGGAGGT
CAAGTAGAGATGGTCGCCGTAAGCATCCTCTGTTTCGCCTCGCTCGCAAC
GCAGGTGGAGAGAAGGAATGGGTACAAACCCCGACAGGTCGTGAGCTGGC
AAGTATAACGTATTCTAGCCCGGGATCAGATGGTTTTGCTGTCGAAGGAA
ACAGCTATCGCGTCGTTTTGCAACCTGGTGTGGATCTAACGATGATCACC
TCTGCAATCGTTAGCCGAGTCGTCATGTGGGCAGGCACTGATGCAAGGTT
TTAA
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Coding sequence (CDS) from alignment at ScGOVlb_647:195154..196557+

>Gvermi13802.t1 ID=Gvermi13802.t1|Name=Gvermi13802.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1404bp|location=Sequence derived from alignment at ScGOVlb_647:195154..196557+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCTCCGCTTCCGTGGACCGCTTCCCGTTTGACCCGTTTGAGCCGCG
TTTTCCCTTCGAGCGCCGGCGCGCCTTGGATGACTTCCCGCTGGGACTTG
ATCAACATCCCATGCACGAGCCTTTCATGGATGAGCTCGAGCCCCCGTTT
CCTCATCGCCATCGTCGTCGCTCGCATTTCTATGAAGATTTTGGAGCGCC
GCAGTTTTCAGATCAGCCCCCACGCTTCTCGATTGATCGTGCGATGCGCT
TCCCGGCACGCACACCGAACATCGTCTTCATGCAGCAGAGGAGCTTCGTT
TTCAACGTCGGTTCCCCTGCAGACAGCCGCGTGCCATGGTTACAGGTCAT
GGATGAATTCGATGGAAGACGCGTGTTGTACGCAACGGGAAACTGTATGC
AGCGAGCCTCCCAAGTACGACTACATGATGACTACTCAGGTGAGCTTCTT
CGTTTAACCCCGCGAAAGAGCTCAACAAAGAGCAGGAAATATGCTTCGTT
ACGCGTCACAACCTTCAACAAATATCGAGATCCCGTCATGACCGCCGTGT
CCATGCGTGACGCTATTGGCCCGACAAATCTTCAGGGAGCGGGtccgcct
ccgcctccgcctccgcctccgTTTGCGTATGCACCTAACGCAAACCCGTA
CTACCCTCCACAGGGCGCCTATCCTTACCCTGGCCCATACCCAATGCCCT
CGTATGGAGCGCCCCCTACCGGTTATCCGGGCATGCCAGCCGGCGCTCCC
AATGCTGCTCAACCGGATGTAACTGAGCCTCAGTCTGCCCCTGATGCAAG
TGGCGATCCATATTCCGCCCCATGGGACGCCGCGCATCAGCAACCACAAG
GAGAGGTGCCAGATTACCCGCAGCCGGACCAATCACGACAGCCTGGACAG
GAATATCCCGGGCCACAACCTCAATATCAACACTGGCAAGGCACGCACTA
TCAACCCAGCTCAGCCTACCCCAATCAGACCTATCCGCAACCTGGGCAAC
AGCCAGGCATGTATGCCAATTATATGCACGGTTTTGCATATCAGAATAAC
AGTGGCCGTCCTCCCTTCCAGAGGTGGGAGACGTCGGACCAGCCGATGGT
GGTCGCCGAATTCTTCGGCGGGGAAAAAAGCTTGGATGACATTCGGAGGT
CAAGTAGAGATGGTCGCCGTAAGCATCCTCTGTTTCGCCTCGCTCGCAAC
GCAGGTGGAGAGAAGGAATGGGTACAAACCCCGACAGGTCGTGAGCTGGC
AAGTATAACGTATTCTAGCCCGGGATCAGATGGTTTTGCTGTCGAAGGAA
ACAGCTATCGCGTCGTTTTGCAACCTGGTGTGGATCTAACGATGATCACC
TCTGCAATCGTTAGCCGAGTCGTCATGTGGGCAGGCACTGATGCAAGGTT
TTAA
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