Gvermi13801.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13801.t1
Unique NameGvermi13801.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length383
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:191155..192303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13801Gvermi13801Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 191155..192303 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13801.t1.start1Gvermi13801.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 191155..191157 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13801.t1.CDS1Gvermi13801.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 191155..192303 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13801.t1.exon1Gvermi13801.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 191155..192303 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13801.t1.stop1Gvermi13801.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 192301..192303 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13801.t1Gvermi13801.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 191155..192303 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13801.t1 ID=Gvermi13801.t1|Name=Gvermi13801.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=383bp
MSITESLLPRHILFNAALYAGAALVYTVVFFSLETSKPGEYVFYDSDKSR
WRTIFNNIAIISWPTLLFGALILLAVRVGAKVRRRRRKRSKNKKRSSSKN
SLSERNASNNSLEAPPPPPSTAPPAASLRMEEAPKPYPPNLQNVSPKEDE
ENPPVIRAQSSGKAKRAKSGTFHVPKGYVAVTRSQRFYAAFGFLWVAVGL
ALTAVAAAIVFVGQRERFQQIATRLGNKREDWKTWIIPICTGGIPLILFG
SLAITSSFKFFSTLTARTSILTRAAADSEGSVREVEDLDLLYNGDRESPD
DDLDDSDEADLKKAPPPAVSVKNNGMIDATILPNSPDQSTVDRLMRQLRD
MGFPNPDQNMAALQASSFDLEKASDKLVNTAT*
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spliced messenger RNA

>Gvermi13801.t1 ID=Gvermi13801.t1|Name=Gvermi13801.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1149bp|location=Sequence derived from alignment at ScGOVlb_647:191155..192303+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCATCACCGAGTCTTTGCTTCCGCGCCACATCCTCTTCAACGCTGC
ATTATACGCTGGCGCCGCGCTAGTGTATACCGTCGTCTTCTTTTCCCTGG
AAACGTCCAAACCCGGTGAATATGTTTTCTATGATTCTGACAAGTCCAGA
TGGCGCACCATATTCAACAACATCGCCATTATATCCTGGCCCACTCTCTT
GTTCGGCGCGCTTATTCTGCTCGCCGTTCGAGTAGGTGCTAAAGTCCGCC
GTCGTCGTCGCAAGCGTTCCAAGAACAAGAAGCGTTCCTCCTCCAAGAAC
TCTCTGTCCGAACGTAACGCGAGCAACAACAGCCTTGAGGCGCCACCTCC
TCCTCCATCAACCGCCCCGCCTGCTGCATCTCTGCGCATGGAAGAAGCCC
CCAAACCATATCCACCCAACTTACAAAATGTTTCGCCCAAAGAAGATGAG
GAGAATCCGCCTGTCATACGTGCGCAGTCTTCTGGGAAAGCGAAACGAGC
CAAATCGGGCACCTTTCATGTTCCGAAAGGCTATGTTGCCGTCACTCGTT
CACAGCGGTTTTACGCCGCCTTCGGGTTCTTGTGGGTGGCCGTGGGACTT
GCGCTGACTGCCGTTGCGGCTGCCATTGTGTTCGTCGGGCAGAGGGAACG
TTTCCAGCAGATAGCCACAAGGCTTGGTAACAAGCGGGAAGATTGGAAAA
CATGGATCATTCCCATATGCACTGGTGGTATTCCTCTCATTCTGTTCGGT
TCTCTGGCCATTACTTCTTCGTTTAAGTTCTTTTCTACACTCACTGCTCG
CACTTCGATACTCACACGAGCCGCCGCCGATTCCGAGGGCTCGGTTAGAG
AGGTGGAGGATCTTGACCTTTTGTACAACGGTGACAGGGAGTCTCCAGAT
GATGATCTAGATGATTCTGATGAGGCTGACCTTAAAAAAGCACCTCCTCC
GGCTGTCTCCGTGAAAAATAACGGGATGATCGACGCAACCATACTGCCCA
ACTCTCCCGATCAAAGCACTGTCGACAGACTTATGCGTCAACTACGGGAC
ATGGGCTTCCCCAACCCAGACCAAAATATGGCCGCACTGCAGGCGTCTTC
TTTCGATCTTGAAAAAGCCAGTGATAAACTTGTGAACACTGCCACTTAA
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protein sequence of Gvermi13801.t1

>Gvermi13801.t1 ID=Gvermi13801.t1|Name=Gvermi13801.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=383bp
MSITESLLPRHILFNAALYAGAALVYTVVFFSLETSKPGEYVFYDSDKSR
WRTIFNNIAIISWPTLLFGALILLAVRVGAKVRRRRRKRSKNKKRSSSKN
SLSERNASNNSLEAPPPPPSTAPPAASLRMEEAPKPYPPNLQNVSPKEDE
ENPPVIRAQSSGKAKRAKSGTFHVPKGYVAVTRSQRFYAAFGFLWVAVGL
ALTAVAAAIVFVGQRERFQQIATRLGNKREDWKTWIIPICTGGIPLILFG
SLAITSSFKFFSTLTARTSILTRAAADSEGSVREVEDLDLLYNGDRESPD
DDLDDSDEADLKKAPPPAVSVKNNGMIDATILPNSPDQSTVDRLMRQLRD
MGFPNPDQNMAALQASSFDLEKASDKLVNTAT*
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mRNA from alignment at ScGOVlb_647:191155..192303+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13801.t1 ID=Gvermi13801.t1|Name=Gvermi13801.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1149bp|location=Sequence derived from alignment at ScGOVlb_647:191155..192303+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCATCACCGAGTCTTTGCTTCCGCGCCACATCCTCTTCAACGCTGC
ATTATACGCTGGCGCCGCGCTAGTGTATACCGTCGTCTTCTTTTCCCTGG
AAACGTCCAAACCCGGTGAATATGTTTTCTATGATTCTGACAAGTCCAGA
TGGCGCACCATATTCAACAACATCGCCATTATATCCTGGCCCACTCTCTT
GTTCGGCGCGCTTATTCTGCTCGCCGTTCGAGTAGGTGCTAAAGTCCGCC
GTCGTCGTCGCAAGCGTTCCAAGAACAAGAAGCGTTCCTCCTCCAAGAAC
TCTCTGTCCGAACGTAACGCGAGCAACAACAGCCTTGAGGCGCCACCTCC
TCCTCCATCAACCGCCCCGCCTGCTGCATCTCTGCGCATGGAAGAAGCCC
CCAAACCATATCCACCCAACTTACAAAATGTTTCGCCCAAAGAAGATGAG
GAGAATCCGCCTGTCATACGTGCGCAGTCTTCTGGGAAAGCGAAACGAGC
CAAATCGGGCACCTTTCATGTTCCGAAAGGCTATGTTGCCGTCACTCGTT
CACAGCGGTTTTACGCCGCCTTCGGGTTCTTGTGGGTGGCCGTGGGACTT
GCGCTGACTGCCGTTGCGGCTGCCATTGTGTTCGTCGGGCAGAGGGAACG
TTTCCAGCAGATAGCCACAAGGCTTGGTAACAAGCGGGAAGATTGGAAAA
CATGGATCATTCCCATATGCACTGGTGGTATTCCTCTCATTCTGTTCGGT
TCTCTGGCCATTACTTCTTCGTTTAAGTTCTTTTCTACACTCACTGCTCG
CACTTCGATACTCACACGAGCCGCCGCCGATTCCGAGGGCTCGGTTAGAG
AGGTGGAGGATCTTGACCTTTTGTACAACGGTGACAGGGAGTCTCCAGAT
GATGATCTAGATGATTCTGATGAGGCTGACCTTAAAAAAGCACCTCCTCC
GGCTGTCTCCGTGAAAAATAACGGGATGATCGACGCAACCATACTGCCCA
ACTCTCCCGATCAAAGCACTGTCGACAGACTTATGCGTCAACTACGGGAC
ATGGGCTTCCCCAACCCAGACCAAAATATGGCCGCACTGCAGGCGTCTTC
TTTCGATCTTGAAAAAGCCAGTGATAAACTTGTGAACACTGCCACTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_647:191155..192303+

>Gvermi13801.t1 ID=Gvermi13801.t1|Name=Gvermi13801.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1149bp|location=Sequence derived from alignment at ScGOVlb_647:191155..192303+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCATCACCGAGTCTTTGCTTCCGCGCCACATCCTCTTCAACGCTGC
ATTATACGCTGGCGCCGCGCTAGTGTATACCGTCGTCTTCTTTTCCCTGG
AAACGTCCAAACCCGGTGAATATGTTTTCTATGATTCTGACAAGTCCAGA
TGGCGCACCATATTCAACAACATCGCCATTATATCCTGGCCCACTCTCTT
GTTCGGCGCGCTTATTCTGCTCGCCGTTCGAGTAGGTGCTAAAGTCCGCC
GTCGTCGTCGCAAGCGTTCCAAGAACAAGAAGCGTTCCTCCTCCAAGAAC
TCTCTGTCCGAACGTAACGCGAGCAACAACAGCCTTGAGGCGCCACCTCC
TCCTCCATCAACCGCCCCGCCTGCTGCATCTCTGCGCATGGAAGAAGCCC
CCAAACCATATCCACCCAACTTACAAAATGTTTCGCCCAAAGAAGATGAG
GAGAATCCGCCTGTCATACGTGCGCAGTCTTCTGGGAAAGCGAAACGAGC
CAAATCGGGCACCTTTCATGTTCCGAAAGGCTATGTTGCCGTCACTCGTT
CACAGCGGTTTTACGCCGCCTTCGGGTTCTTGTGGGTGGCCGTGGGACTT
GCGCTGACTGCCGTTGCGGCTGCCATTGTGTTCGTCGGGCAGAGGGAACG
TTTCCAGCAGATAGCCACAAGGCTTGGTAACAAGCGGGAAGATTGGAAAA
CATGGATCATTCCCATATGCACTGGTGGTATTCCTCTCATTCTGTTCGGT
TCTCTGGCCATTACTTCTTCGTTTAAGTTCTTTTCTACACTCACTGCTCG
CACTTCGATACTCACACGAGCCGCCGCCGATTCCGAGGGCTCGGTTAGAG
AGGTGGAGGATCTTGACCTTTTGTACAACGGTGACAGGGAGTCTCCAGAT
GATGATCTAGATGATTCTGATGAGGCTGACCTTAAAAAAGCACCTCCTCC
GGCTGTCTCCGTGAAAAATAACGGGATGATCGACGCAACCATACTGCCCA
ACTCTCCCGATCAAAGCACTGTCGACAGACTTATGCGTCAACTACGGGAC
ATGGGCTTCCCCAACCCAGACCAAAATATGGCCGCACTGCAGGCGTCTTC
TTTCGATCTTGAAAAAGCCAGTGATAAACTTGTGAACACTGCCACTTAA
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