Gvermi13800.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13800.t1
Unique NameGvermi13800.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length266
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:188515..189312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706471.1
PFAMsICMT,PEMT
Max annot lvl2759|Eukaryota
Evalue8.81e-39
EggNOG OGs2E1Z1@1|root,2S98C@2759|Eukaryota
DescriptionIsoprenylcysteine carboxyl methyltransferase (ICMT) family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13800Gvermi13800Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 188515..189312 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13800.t1.start1Gvermi13800.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 188515..188517 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13800.t1.CDS1Gvermi13800.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 188515..189312 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13800.t1.exon1Gvermi13800.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 188515..189312 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13800.t1.stop1Gvermi13800.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 189310..189312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13800.t1Gvermi13800.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 188515..189312 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13800.t1 ID=Gvermi13800.t1|Name=Gvermi13800.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=266bp
MFTAAFVSCFSAAPTRTHLLAPRNRNATNLRRRHISRRRVRMSADPEDLN
SEPQAAKSTSTANAPSLDTDVFSRFVDTAQQKIDDVQQSIQDLDTNQFLD
DAKQTSTGLVDNFLAGDWLNRGELYGALQLAFALLLLRGGGFLDLFVNFL
AGPALFAVGAAISAKSVFDLGPKQLSIWPAPVPAGELKTDGLYEYVRHPM
YAGVLLACAGFAVATASPSRVALTIAFGAFLLKKIDVEEQFLKDAYPGYD
EYTQEVVFKLVPNLF*
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spliced messenger RNA

>Gvermi13800.t1 ID=Gvermi13800.t1|Name=Gvermi13800.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=798bp|location=Sequence derived from alignment at ScGOVlb_647:188515..189312+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCACAGCCGCTTTCGTATCGTGCTTCTCGGCCGCCCCAACCCGCAC
TCACCTCCTCGCCCCGCGAAACCGCAATGCCACCAACCTGCGTCGCCGCC
ACATCTCGCGCCGACGAGTGCGCATGAGCGCTGATCCAGAGGACCTCAAC
TCAGAGCCACAGGCTGCAAAAAGCACATCAACCGCAAACGCACCCTCGCT
CGACACCGATGTCTTCTCCAGGTTTGTCGACACGGCCCAGCAGAAGATCG
ACGACGTTCAGCAATCCATCCAGGACCTCGACACCAACCAGTTTCTCGAC
GACGCAAAGCAGACCTCTACCGGCCTTGTCGACAACTTTTTAGCCGGTGA
CTGGCTCAATCGCGGTGAGTTGTACGGTGCGTTGCAGCTTGCGTTTGCAT
TGCTCCTCTTGCGCGGCGGCGGCTTTCTGGACCTGTTTGTCAATTTCCTT
GCAGGCCCGGCGCTGTTCGCCGTCGGCGCCGCAATCTCGGCAAAGTCTGT
GTTCGATCTGGGGCCGAAACAACTCTCCATTTGGCCGGCTCCCGTCCCAG
CAGGCGAGCTCAAAACCGACGGTTTGTACGAATATGTCAGACACCCCATG
TACGCAGGCGTCCTTCTAGCCTGTGCAGGGTTTGCCGTCGCCACCGCCTC
TCCCTCCCGAGTCGCTCTCACAATTGCATTTGGCGCGTTTTTACTCAAGA
AAATAGACGTGGAAGAACAGTTCTTGAAGGATGCATATCCGGGCTACGAT
GAATACACACAAGAGGTTGTCTTCAAGCTTGTACCGAACCTGTTCTAA
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protein sequence of Gvermi13800.t1

>Gvermi13800.t1 ID=Gvermi13800.t1|Name=Gvermi13800.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=266bp
MFTAAFVSCFSAAPTRTHLLAPRNRNATNLRRRHISRRRVRMSADPEDLN
SEPQAAKSTSTANAPSLDTDVFSRFVDTAQQKIDDVQQSIQDLDTNQFLD
DAKQTSTGLVDNFLAGDWLNRGELYGALQLAFALLLLRGGGFLDLFVNFL
AGPALFAVGAAISAKSVFDLGPKQLSIWPAPVPAGELKTDGLYEYVRHPM
YAGVLLACAGFAVATASPSRVALTIAFGAFLLKKIDVEEQFLKDAYPGYD
EYTQEVVFKLVPNLF*
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mRNA from alignment at ScGOVlb_647:188515..189312+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13800.t1 ID=Gvermi13800.t1|Name=Gvermi13800.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=798bp|location=Sequence derived from alignment at ScGOVlb_647:188515..189312+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCACAGCCGCTTTCGTATCGTGCTTCTCGGCCGCCCCAACCCGCAC
TCACCTCCTCGCCCCGCGAAACCGCAATGCCACCAACCTGCGTCGCCGCC
ACATCTCGCGCCGACGAGTGCGCATGAGCGCTGATCCAGAGGACCTCAAC
TCAGAGCCACAGGCTGCAAAAAGCACATCAACCGCAAACGCACCCTCGCT
CGACACCGATGTCTTCTCCAGGTTTGTCGACACGGCCCAGCAGAAGATCG
ACGACGTTCAGCAATCCATCCAGGACCTCGACACCAACCAGTTTCTCGAC
GACGCAAAGCAGACCTCTACCGGCCTTGTCGACAACTTTTTAGCCGGTGA
CTGGCTCAATCGCGGTGAGTTGTACGGTGCGTTGCAGCTTGCGTTTGCAT
TGCTCCTCTTGCGCGGCGGCGGCTTTCTGGACCTGTTTGTCAATTTCCTT
GCAGGCCCGGCGCTGTTCGCCGTCGGCGCCGCAATCTCGGCAAAGTCTGT
GTTCGATCTGGGGCCGAAACAACTCTCCATTTGGCCGGCTCCCGTCCCAG
CAGGCGAGCTCAAAACCGACGGTTTGTACGAATATGTCAGACACCCCATG
TACGCAGGCGTCCTTCTAGCCTGTGCAGGGTTTGCCGTCGCCACCGCCTC
TCCCTCCCGAGTCGCTCTCACAATTGCATTTGGCGCGTTTTTACTCAAGA
AAATAGACGTGGAAGAACAGTTCTTGAAGGATGCATATCCGGGCTACGAT
GAATACACACAAGAGGTTGTCTTCAAGCTTGTACCGAACCTGTTCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_647:188515..189312+

>Gvermi13800.t1 ID=Gvermi13800.t1|Name=Gvermi13800.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=798bp|location=Sequence derived from alignment at ScGOVlb_647:188515..189312+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCACAGCCGCTTTCGTATCGTGCTTCTCGGCCGCCCCAACCCGCAC
TCACCTCCTCGCCCCGCGAAACCGCAATGCCACCAACCTGCGTCGCCGCC
ACATCTCGCGCCGACGAGTGCGCATGAGCGCTGATCCAGAGGACCTCAAC
TCAGAGCCACAGGCTGCAAAAAGCACATCAACCGCAAACGCACCCTCGCT
CGACACCGATGTCTTCTCCAGGTTTGTCGACACGGCCCAGCAGAAGATCG
ACGACGTTCAGCAATCCATCCAGGACCTCGACACCAACCAGTTTCTCGAC
GACGCAAAGCAGACCTCTACCGGCCTTGTCGACAACTTTTTAGCCGGTGA
CTGGCTCAATCGCGGTGAGTTGTACGGTGCGTTGCAGCTTGCGTTTGCAT
TGCTCCTCTTGCGCGGCGGCGGCTTTCTGGACCTGTTTGTCAATTTCCTT
GCAGGCCCGGCGCTGTTCGCCGTCGGCGCCGCAATCTCGGCAAAGTCTGT
GTTCGATCTGGGGCCGAAACAACTCTCCATTTGGCCGGCTCCCGTCCCAG
CAGGCGAGCTCAAAACCGACGGTTTGTACGAATATGTCAGACACCCCATG
TACGCAGGCGTCCTTCTAGCCTGTGCAGGGTTTGCCGTCGCCACCGCCTC
TCCCTCCCGAGTCGCTCTCACAATTGCATTTGGCGCGTTTTTACTCAAGA
AAATAGACGTGGAAGAACAGTTCTTGAAGGATGCATATCCGGGCTACGAT
GAATACACACAAGAGGTTGTCTTCAAGCTTGTACCGAACCTGTTCTAA
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