Gvermi13798.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13798.t1
Unique NameGvermi13798.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length280
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:182857..183801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13798Gvermi13798Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 182857..183801 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13798.t1Gvermi13798.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 182857..183801 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13798.t1.start1Gvermi13798.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 182857..182859 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13798.t1.CDS1Gvermi13798.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 182857..183181 +
Gvermi13798.t1.CDS2Gvermi13798.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 183287..183801 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13798.t1.exon1Gvermi13798.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 182857..183181 +
Gvermi13798.t1.exon2Gvermi13798.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 183287..183801 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13798.t1.intron1Gvermi13798.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_647 183182..183286 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13798.t1.stop1Gvermi13798.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 183799..183801 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13798.t1 ID=Gvermi13798.t1|Name=Gvermi13798.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=280bp
MFPHALLRACLVLALLACALAQPPHDVVKFSPFDLSSISLYGPLAIYRPQ
WCPSSVSFAMRARALPELADDKIGLFTSDIYMDDQPCTSSTSMLLFTPIG
RPPHLPPQWVFEDSAISGNAVNFTCGSSTYAIRYGYLNDVHTPSGFLDDT
VVYLDFAVIPNTLPFSFCSYATRRNDNERPVDHAPFPTVQTWNKIRATND
LPPLPEPDSQQDVEQMPVPSAEPVEPEMDAIPSPEDTEPVPMPPMLFPSP
EAAIPAPFTSRLVDALTSAVSRAIASIRL*
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spliced messenger RNA

>Gvermi13798.t1 ID=Gvermi13798.t1|Name=Gvermi13798.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=840bp|location=Sequence derived from alignment at ScGOVlb_647:182857..183801+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCCGCACGCCCTGCTTCGCGCCTGCCTTGTTCTCGCCCTGCTTGC
TTGCGCCCTTGCTCAGCCGCCGCACGACGTTGTCAAGTTTTCGCCATTCG
ATCTTTCGTCAATCTCCTTGTATGGACCATTGGCCATCTACCGCCCGCAG
TGGTGCCCCTCTTCCGTCTCGTTTGCCATGCGCGCCCGCGCGCTCCCCGA
ACTGGCCGATGACAAGATTGGCTTGTTTACCTCCGACATTTACATGGACG
ATCAGCCGTGTACATCCTCCACCTCCATGTTGCTTTTTACTCCGATCGGC
AGACCGCCCCACCTTCCTCCACAATGGGTATTTGAAGACTCAGCGATCTC
AGGAAACGCCGTCAACTTCACCTGCGGCTCGAGTACCTACGCCATTCGCT
ACGGCTACCTCAACGACGTCCACACGCCCTCCGGCTTTCTGGATGACACC
GTCGTCTACCTCGACTTTGCCGTCATTCCTAACACACTCCCATTCTCCTT
CTGCTCTTATGCCACCAGGAGAAATGATAATGAACGGCCCGTAGATCACG
CCCCCTTCCCAACGGTGCAGACATGGAACAAAATCAGAGCAACCAATGAC
TTGCCACCGCTGCCAGAACCCGATTCACAACAGGACGTTGAACAAATGCC
TGTGCCCAGCGCAGAACCAGTGGAGCCTGAAATGGACGCCATTCCCAGCC
CAGAGGATACGGAACCCGTGCCGATGCCGCCGATGCTATTCCCCAGTCCG
GAGGCCGCCATCCCTGCCCCATTCACCTCGCGGCTAGTTGACGCTCTCAC
AAGCGCAGTAAGCCGAGCTATAGCCTCCATTCGTTTGTAG
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protein sequence of Gvermi13798.t1

>Gvermi13798.t1 ID=Gvermi13798.t1|Name=Gvermi13798.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=280bp
MFPHALLRACLVLALLACALAQPPHDVVKFSPFDLSSISLYGPLAIYRPQ
WCPSSVSFAMRARALPELADDKIGLFTSDIYMDDQPCTSSTSMLLFTPIG
RPPHLPPQWVFEDSAISGNAVNFTCGSSTYAIRYGYLNDVHTPSGFLDDT
VVYLDFAVIPNTLPFSFCSYATRRNDNERPVDHAPFPTVQTWNKIRATND
LPPLPEPDSQQDVEQMPVPSAEPVEPEMDAIPSPEDTEPVPMPPMLFPSP
EAAIPAPFTSRLVDALTSAVSRAIASIRL*
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mRNA from alignment at ScGOVlb_647:182857..183801+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13798.t1 ID=Gvermi13798.t1|Name=Gvermi13798.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=945bp|location=Sequence derived from alignment at ScGOVlb_647:182857..183801+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCCCGCACGCCCTGCTTCGCGCCTGCCTTGTTCTCGCCCTGCTTGC
TTGCGCCCTTGCTCAGCCGCCGCACGACGTTGTCAAGTTTTCGCCATTCG
ATCTTTCGTCAATCTCCTTGTATGGACCATTGGCCATCTACCGCCCGCAG
TGGTGCCCCTCTTCCGTCTCGTTTGCCATGCGCGCCCGCGCGCTCCCCGA
ACTGGCCGATGACAAGATTGGCTTGTTTACCTCCGACATTTACATGGACG
ATCAGCCGTGTACATCCTCCACCTCCATGTTGCTTTTTACTCCGATCGGC
AGACCGCCCCACCTTCCTCCACAATGTACGTTTCATACTCTTATCCCTTC
CTGCCGATCCCACATGATCTGACCATCCGCAACGTGTGTGCGTCATCCCC
GCCCTGTTTCCGTCGTATCTTGTGTCACAGGGGTATTTGAAGACTCAGCG
ATCTCAGGAAACGCCGTCAACTTCACCTGCGGCTCGAGTACCTACGCCAT
TCGCTACGGCTACCTCAACGACGTCCACACGCCCTCCGGCTTTCTGGATG
ACACCGTCGTCTACCTCGACTTTGCCGTCATTCCTAACACACTCCCATTC
TCCTTCTGCTCTTATGCCACCAGGAGAAATGATAATGAACGGCCCGTAGA
TCACGCCCCCTTCCCAACGGTGCAGACATGGAACAAAATCAGAGCAACCA
ATGACTTGCCACCGCTGCCAGAACCCGATTCACAACAGGACGTTGAACAA
ATGCCTGTGCCCAGCGCAGAACCAGTGGAGCCTGAAATGGACGCCATTCC
CAGCCCAGAGGATACGGAACCCGTGCCGATGCCGCCGATGCTATTCCCCA
GTCCGGAGGCCGCCATCCCTGCCCCATTCACCTCGCGGCTAGTTGACGCT
CTCACAAGCGCAGTAAGCCGAGCTATAGCCTCCATTCGTTTGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_647:182857..183801+

>Gvermi13798.t1 ID=Gvermi13798.t1|Name=Gvermi13798.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=840bp|location=Sequence derived from alignment at ScGOVlb_647:182857..183801+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCCCGCACGCCCTGCTTCGCGCCTGCCTTGTTCTCGCCCTGCTTGC
TTGCGCCCTTGCTCAGCCGCCGCACGACGTTGTCAAGTTTTCGCCATTCG
ATCTTTCGTCAATCTCCTTGTATGGACCATTGGCCATCTACCGCCCGCAG
TGGTGCCCCTCTTCCGTCTCGTTTGCCATGCGCGCCCGCGCGCTCCCCGA
ACTGGCCGATGACAAGATTGGCTTGTTTACCTCCGACATTTACATGGACG
ATCAGCCGTGTACATCCTCCACCTCCATGTTGCTTTTTACTCCGATCGGC
AGACCGCCCCACCTTCCTCCACAATGGGTATTTGAAGACTCAGCGATCTC
AGGAAACGCCGTCAACTTCACCTGCGGCTCGAGTACCTACGCCATTCGCT
ACGGCTACCTCAACGACGTCCACACGCCCTCCGGCTTTCTGGATGACACC
GTCGTCTACCTCGACTTTGCCGTCATTCCTAACACACTCCCATTCTCCTT
CTGCTCTTATGCCACCAGGAGAAATGATAATGAACGGCCCGTAGATCACG
CCCCCTTCCCAACGGTGCAGACATGGAACAAAATCAGAGCAACCAATGAC
TTGCCACCGCTGCCAGAACCCGATTCACAACAGGACGTTGAACAAATGCC
TGTGCCCAGCGCAGAACCAGTGGAGCCTGAAATGGACGCCATTCCCAGCC
CAGAGGATACGGAACCCGTGCCGATGCCGCCGATGCTATTCCCCAGTCCG
GAGGCCGCCATCCCTGCCCCATTCACCTCGCGGCTAGTTGACGCTCTCAC
AAGCGCAGTAAGCCGAGCTATAGCCTCCATTCGTTTGTAG
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