Gvermi13796.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13796.t1
Unique NameGvermi13796.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length268
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:95092..95895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13796Gvermi13796Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 95092..95895 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13796.t1.stop1Gvermi13796.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 95092..95094 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13796.t1.CDS1Gvermi13796.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 95092..95895 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13796.t1.exon1Gvermi13796.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 95092..95895 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13796.t1.start1Gvermi13796.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 95893..95895 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13796.t1Gvermi13796.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 95092..95895 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13796.t1 ID=Gvermi13796.t1|Name=Gvermi13796.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=268bp
MKSGKDKKTVLNRTIYQLHAWCRKSLVGQSNRYSKYDPDSPCPPFLFVSE
SFSFPFYPCPLKRIQHKPFQYSGATDFLLLMAFNAFHAQTAKWGSKLQKL
GDAHHTFKDAAPSNMFRGFVVRAQKGLKDRFDRIVDMRWKDVKSNEATTR
TEEDVREREELLDDLIHAMDEMKELKRMDQEKALEMETRLIKAAQEVWNR
ATNRSSAALSIKYHTASLLKLKLGGLEWKCHLLGSLQYPQWLLLCVLRLW
SRADVKHANRTTIREDF*
back to top

spliced messenger RNA

>Gvermi13796.t1 ID=Gvermi13796.t1|Name=Gvermi13796.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=804bp|location=Sequence derived from alignment at ScGOVlb_647:95092..95895- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTCTGGAAAGGATAAAAAAACCGTCCTCAACAGGACCATCTATCA
ACTCCACGCCTGGTGCCGCAAATCGCTGGTAGGGCAATCAAACCGCTACT
CCAAATACGACCCCGACAGTCCTTGTCCCCCTTTCCTCTTCGTTTCAGAA
TCTTTCAGCTTCCCCTTCTACCCTTGCCCTCTTAAACGCATACAGCATAA
GCCTTTTCAGTACTCTGGGGCCACAGATTTTCTTCTGCTGATGGCTTTCA
ACGCCTTTCATGCGCAAACTGCGAAATGGGGTTCTAAACTTCAAAAGCTG
GGAGACGCGCATCACACCTTCAAGGATGCCGCGCCCTCCAACATGTTCCG
CGGCTTCGTGGTACGCGCACAGAAGGGCTTGAAGGATAGATTCGATAGAA
TCGTCGACATGCGGTGGAAAGACGTGAAGTCCAATGAGGCCACAACTAGG
ACTGAGGAAGATGTTCGGGAGCGAGAGGAACTGTTGGATGACCTCATACA
TGCAATGGACGAAATGAAGGAGCTCAAGCGGATGGATCAGGAGAAAGCAC
TAGAGATGGAGACAAGACTTATCAAAGCTGCTCAAGAAGTTTGGAATCGG
GCCACTAACCGCAGTTCTGCAGCTTTGTCTATAAAATACCACACAGCAAG
TTTGTTGAAGCTAAAGCTGGGGGGTTTGGAATGGAAGTGCCACCTTCTGG
GGTCACTCCAGTATCCCCAGTGGCTTCTGTTGTGCGTCCTTCGCCTTTGG
AGTCGCGCAGACGTAAAACATGCAAATCGGACAACTATAAGAGAGGATTT
TTAA
back to top

protein sequence of Gvermi13796.t1

>Gvermi13796.t1 ID=Gvermi13796.t1|Name=Gvermi13796.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=268bp
MKSGKDKKTVLNRTIYQLHAWCRKSLVGQSNRYSKYDPDSPCPPFLFVSE
SFSFPFYPCPLKRIQHKPFQYSGATDFLLLMAFNAFHAQTAKWGSKLQKL
GDAHHTFKDAAPSNMFRGFVVRAQKGLKDRFDRIVDMRWKDVKSNEATTR
TEEDVREREELLDDLIHAMDEMKELKRMDQEKALEMETRLIKAAQEVWNR
ATNRSSAALSIKYHTASLLKLKLGGLEWKCHLLGSLQYPQWLLLCVLRLW
SRADVKHANRTTIREDF*
back to top

mRNA from alignment at ScGOVlb_647:95092..95895-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13796.t1 ID=Gvermi13796.t1|Name=Gvermi13796.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=804bp|location=Sequence derived from alignment at ScGOVlb_647:95092..95895- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGTCTGGAAAGGATAAAAAAACCGTCCTCAACAGGACCATCTATCA
ACTCCACGCCTGGTGCCGCAAATCGCTGGTAGGGCAATCAAACCGCTACT
CCAAATACGACCCCGACAGTCCTTGTCCCCCTTTCCTCTTCGTTTCAGAA
TCTTTCAGCTTCCCCTTCTACCCTTGCCCTCTTAAACGCATACAGCATAA
GCCTTTTCAGTACTCTGGGGCCACAGATTTTCTTCTGCTGATGGCTTTCA
ACGCCTTTCATGCGCAAACTGCGAAATGGGGTTCTAAACTTCAAAAGCTG
GGAGACGCGCATCACACCTTCAAGGATGCCGCGCCCTCCAACATGTTCCG
CGGCTTCGTGGTACGCGCACAGAAGGGCTTGAAGGATAGATTCGATAGAA
TCGTCGACATGCGGTGGAAAGACGTGAAGTCCAATGAGGCCACAACTAGG
ACTGAGGAAGATGTTCGGGAGCGAGAGGAACTGTTGGATGACCTCATACA
TGCAATGGACGAAATGAAGGAGCTCAAGCGGATGGATCAGGAGAAAGCAC
TAGAGATGGAGACAAGACTTATCAAAGCTGCTCAAGAAGTTTGGAATCGG
GCCACTAACCGCAGTTCTGCAGCTTTGTCTATAAAATACCACACAGCAAG
TTTGTTGAAGCTAAAGCTGGGGGGTTTGGAATGGAAGTGCCACCTTCTGG
GGTCACTCCAGTATCCCCAGTGGCTTCTGTTGTGCGTCCTTCGCCTTTGG
AGTCGCGCAGACGTAAAACATGCAAATCGGACAACTATAAGAGAGGATTT
TTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_647:95092..95895-

>Gvermi13796.t1 ID=Gvermi13796.t1|Name=Gvermi13796.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=804bp|location=Sequence derived from alignment at ScGOVlb_647:95092..95895- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGTCTGGAAAGGATAAAAAAACCGTCCTCAACAGGACCATCTATCA
ACTCCACGCCTGGTGCCGCAAATCGCTGGTAGGGCAATCAAACCGCTACT
CCAAATACGACCCCGACAGTCCTTGTCCCCCTTTCCTCTTCGTTTCAGAA
TCTTTCAGCTTCCCCTTCTACCCTTGCCCTCTTAAACGCATACAGCATAA
GCCTTTTCAGTACTCTGGGGCCACAGATTTTCTTCTGCTGATGGCTTTCA
ACGCCTTTCATGCGCAAACTGCGAAATGGGGTTCTAAACTTCAAAAGCTG
GGAGACGCGCATCACACCTTCAAGGATGCCGCGCCCTCCAACATGTTCCG
CGGCTTCGTGGTACGCGCACAGAAGGGCTTGAAGGATAGATTCGATAGAA
TCGTCGACATGCGGTGGAAAGACGTGAAGTCCAATGAGGCCACAACTAGG
ACTGAGGAAGATGTTCGGGAGCGAGAGGAACTGTTGGATGACCTCATACA
TGCAATGGACGAAATGAAGGAGCTCAAGCGGATGGATCAGGAGAAAGCAC
TAGAGATGGAGACAAGACTTATCAAAGCTGCTCAAGAAGTTTGGAATCGG
GCCACTAACCGCAGTTCTGCAGCTTTGTCTATAAAATACCACACAGCAAG
TTTGTTGAAGCTAAAGCTGGGGGGTTTGGAATGGAAGTGCCACCTTCTGG
GGTCACTCCAGTATCCCCAGTGGCTTCTGTTGTGCGTCCTTCGCCTTTGG
AGTCGCGCAGACGTAAAACATGCAAATCGGACAACTATAAGAGAGGATTT
TTAA
back to top