Gvermi13795.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13795.t1
Unique NameGvermi13795.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length658
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:49865..51838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13795Gvermi13795Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 49865..51838 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13795.t1.start1Gvermi13795.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 49865..49867 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13795.t1.CDS1Gvermi13795.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 49865..51838 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13795.t1.exon1Gvermi13795.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 49865..51838 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13795.t1.stop1Gvermi13795.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 51836..51838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13795.t1Gvermi13795.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 49865..51838 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13795.t1 ID=Gvermi13795.t1|Name=Gvermi13795.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=658bp
MSAFIGSPGTKFQPFSVVFTSMNTKEEDTNSAWSSHFKQLIDGMGLALRY
HNMGVREFLALNSICNQREFDLTTYLSGRQGPEAMKEYEGLDTDIELRVL
GKRSTKELHYFEHFQLALQVIMSAILSRQVDEEYVLRCSSLKEEDFGGIL
NVQMETLGFFVVDIPSLCGMRDFLRVDNGRPKLVKDRDCSFLLGDSGKSS
SFRKWTPEIGKEISSKTDEMAYVAYTVIPLYDGSFLDKSNVEEIYVTAWV
TRAIVSGIATKKADDSTFRGVYYEWAHFDRRLDNCLSYRLHAGTTLIVPA
STVVSFKGSLVHNVRVFGTVMKAWTTSKQKEIILQHKWDNIEESCERKKL
FFGSTYPKPKSKDLKKMNSAWLENVRMSVGAVPSLKSLHPMCTNRQQSLN
VIEETLDSTCTSLGEILKNNPTIVVRQNRKTTFKHGELEAQDGWLVEGIP
YARLFQCSHRSDTAHHELNLSDVNFNALRTKRPPGVEDMESDSDINEDAS
DSSQSEKRKMEDGKTPFNEIGHQMKAIRNDYKKGISISKSDVLSGEAPPS
PEKKYLRNFESDKIQPNLTQEVDENNIAQSQDNEKKKEKIDADRIRKAIT
ESQQKNLTEKDEKKKKVSVVHLEKAVSVFDRDNKRGREGSAAKNSTESFM
LKKQKKN*
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spliced messenger RNA

>Gvermi13795.t1 ID=Gvermi13795.t1|Name=Gvermi13795.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1974bp|location=Sequence derived from alignment at ScGOVlb_647:49865..51838+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCGTTCATTGGAAGTCCCGGTACCAAATTTCAACCATTTTCAGT
AGTGTTCACGTCCATGAATACGAAAGAAGAAGACACAAATTCTGCATGGA
GTTCTCATTTCAAACAATTAATAGACGGGATGGGACTTGCACTTCGATAT
CATAATATGGGAGTAAGAGAATTTTTAGCTTTGAACAGCATTTGCAATCA
AAGAGAGTTTGACCTCACAACGTATTTGTCAGGAAGACAAGGCCCGGAAG
CTATGAAAGAGTACGAAGGTCTTGATACCGACATAGAATTGCGTGTACTT
GGGAAACGTTCAACAAAAGAGCTCCATTATTTTGAACATTTTCAATTAGC
CCTCCAAGTCATTATGTCGGCTATACTGAGCCGACAGGTAGATGAAGAAT
ATGTTCTCCGGTGTTCAAGCCTAAAAGAAGAAGACTTCGGAGGAATACTA
AACGTTCAAATGGAAACATTGGGTTTCTTTGTTGTCGACATACCAAGCCT
TTGTGGCATGCGAGATTTCTTGCGAGTCGATAATGGGCGTCCTAAACTTG
TTAAAGACAGAGACTGCAGCTTCTTACTCGGTGATAGCGGAAAATCTTCA
TCTTTTCGGAAATGGACTCCGGAGATAGGGAAAGAAATATCTTCCAAAAC
TGATGAAATGGCTTACGTTGCATATACTGTGATTCCTTTATATGACGGCA
GTTTTCTGGACAAGAGTAATGTGGAAGAAATATATGTAACCGCCTGGGTC
ACGCGTGCCATTGTAAGCGGAATCGCTACAAAAAAGGCAGATGATAGTAC
CTTTAGAGGAGTATACTACGAATGGGCGCATTTTGACAGACGACTTGATA
ACTGTCTTTCATACAGACTTCACGCCGGAACTACTCTAATTGTTCCAGCA
TCAACTGTTGTAAGTTTCAAGGGCTCTTTGGTACATAATGTGCGGGTCTT
TGGAACAGTCATGAAAGCTTGGACAACTTCTAAACAAAAAGAAATAATTC
TTCAACACAAATGGGATAATATAGAAGAATCTTGCGAACGAAAAAAGCTT
TTTTTTGGAAGTACATATCCCAAACCAAAGAGCAAAGATCTAAAAAAGAT
GAACAGCGCCTGGCTTGAAAATGTACGTATGAGCGTTGGGGCGGTCCCAT
CGTTGAAGAGTTTGCATCCAATGTGCACCAACAGACAGCAAAGTCTAAAT
GTAATTGAAGAGACTCTTGACTCGACTTGCACCAGTCTTGGAGAAATTCT
AAAAAATAATCCAACGATAGTCGTCCGTCAAAATAGAAAAACAACGTTCA
AACATGGAGAACTAGAAGCCCAAGACGGATGGCTTGTTGAAGGTATTCCG
TACGCAAGGCTTTTTCAATGCTCCCATCGTTCAGATACCGCTCACCATGA
ACTAAATCTTTCAGACGTGAATTTCAATGCACTCAGAACAAAACGTCCAC
CAGGAGTAGAAGACATGGAAAGTGATAGTGATATAAATGAAGACGCCAGT
GATTCATCGCAGAGTGAAAAAAGAAAAATGGAAGACGGAAAAACACCATT
TAATGAAATTGGACATCAAATGAAGGCCATTAGAAATGATTATAAAAAAG
GAATCTCCATTAGCAAGAGTGACGTCCTAAGCGGTGAAGCTCCACCTAGT
CCTGAGAAGAAATACTTGAGAAACTTTGAGTCCGATAAAATACAGCCCAA
CCTAACTCAAGAAGTGGATGAGAACAATATCGCACAGAGTCAAGATAATG
AGAAGAAAAAAGAAAAAATTGACGCGGATCGCATTCGGAAAGCAATAACT
GAAAGTCAGCAAAAGAATTTAACGGAAAAGGATGAGAAGAAGAAGAAAGT
CAGTGTAGTACATCTGGAAAAGGCAGTTTCAGTTTTTGATAGAGATAACA
AACGGGGACGTGAAGGTTCTGCAGCTAAGAACAGTACAGAAAGTTTTATG
CTTAAAAAGCAAAAGAAAAATTAA
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protein sequence of Gvermi13795.t1

>Gvermi13795.t1 ID=Gvermi13795.t1|Name=Gvermi13795.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=658bp
MSAFIGSPGTKFQPFSVVFTSMNTKEEDTNSAWSSHFKQLIDGMGLALRY
HNMGVREFLALNSICNQREFDLTTYLSGRQGPEAMKEYEGLDTDIELRVL
GKRSTKELHYFEHFQLALQVIMSAILSRQVDEEYVLRCSSLKEEDFGGIL
NVQMETLGFFVVDIPSLCGMRDFLRVDNGRPKLVKDRDCSFLLGDSGKSS
SFRKWTPEIGKEISSKTDEMAYVAYTVIPLYDGSFLDKSNVEEIYVTAWV
TRAIVSGIATKKADDSTFRGVYYEWAHFDRRLDNCLSYRLHAGTTLIVPA
STVVSFKGSLVHNVRVFGTVMKAWTTSKQKEIILQHKWDNIEESCERKKL
FFGSTYPKPKSKDLKKMNSAWLENVRMSVGAVPSLKSLHPMCTNRQQSLN
VIEETLDSTCTSLGEILKNNPTIVVRQNRKTTFKHGELEAQDGWLVEGIP
YARLFQCSHRSDTAHHELNLSDVNFNALRTKRPPGVEDMESDSDINEDAS
DSSQSEKRKMEDGKTPFNEIGHQMKAIRNDYKKGISISKSDVLSGEAPPS
PEKKYLRNFESDKIQPNLTQEVDENNIAQSQDNEKKKEKIDADRIRKAIT
ESQQKNLTEKDEKKKKVSVVHLEKAVSVFDRDNKRGREGSAAKNSTESFM
LKKQKKN*
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mRNA from alignment at ScGOVlb_647:49865..51838+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13795.t1 ID=Gvermi13795.t1|Name=Gvermi13795.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1974bp|location=Sequence derived from alignment at ScGOVlb_647:49865..51838+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCGCGTTCATTGGAAGTCCCGGTACCAAATTTCAACCATTTTCAGT
AGTGTTCACGTCCATGAATACGAAAGAAGAAGACACAAATTCTGCATGGA
GTTCTCATTTCAAACAATTAATAGACGGGATGGGACTTGCACTTCGATAT
CATAATATGGGAGTAAGAGAATTTTTAGCTTTGAACAGCATTTGCAATCA
AAGAGAGTTTGACCTCACAACGTATTTGTCAGGAAGACAAGGCCCGGAAG
CTATGAAAGAGTACGAAGGTCTTGATACCGACATAGAATTGCGTGTACTT
GGGAAACGTTCAACAAAAGAGCTCCATTATTTTGAACATTTTCAATTAGC
CCTCCAAGTCATTATGTCGGCTATACTGAGCCGACAGGTAGATGAAGAAT
ATGTTCTCCGGTGTTCAAGCCTAAAAGAAGAAGACTTCGGAGGAATACTA
AACGTTCAAATGGAAACATTGGGTTTCTTTGTTGTCGACATACCAAGCCT
TTGTGGCATGCGAGATTTCTTGCGAGTCGATAATGGGCGTCCTAAACTTG
TTAAAGACAGAGACTGCAGCTTCTTACTCGGTGATAGCGGAAAATCTTCA
TCTTTTCGGAAATGGACTCCGGAGATAGGGAAAGAAATATCTTCCAAAAC
TGATGAAATGGCTTACGTTGCATATACTGTGATTCCTTTATATGACGGCA
GTTTTCTGGACAAGAGTAATGTGGAAGAAATATATGTAACCGCCTGGGTC
ACGCGTGCCATTGTAAGCGGAATCGCTACAAAAAAGGCAGATGATAGTAC
CTTTAGAGGAGTATACTACGAATGGGCGCATTTTGACAGACGACTTGATA
ACTGTCTTTCATACAGACTTCACGCCGGAACTACTCTAATTGTTCCAGCA
TCAACTGTTGTAAGTTTCAAGGGCTCTTTGGTACATAATGTGCGGGTCTT
TGGAACAGTCATGAAAGCTTGGACAACTTCTAAACAAAAAGAAATAATTC
TTCAACACAAATGGGATAATATAGAAGAATCTTGCGAACGAAAAAAGCTT
TTTTTTGGAAGTACATATCCCAAACCAAAGAGCAAAGATCTAAAAAAGAT
GAACAGCGCCTGGCTTGAAAATGTACGTATGAGCGTTGGGGCGGTCCCAT
CGTTGAAGAGTTTGCATCCAATGTGCACCAACAGACAGCAAAGTCTAAAT
GTAATTGAAGAGACTCTTGACTCGACTTGCACCAGTCTTGGAGAAATTCT
AAAAAATAATCCAACGATAGTCGTCCGTCAAAATAGAAAAACAACGTTCA
AACATGGAGAACTAGAAGCCCAAGACGGATGGCTTGTTGAAGGTATTCCG
TACGCAAGGCTTTTTCAATGCTCCCATCGTTCAGATACCGCTCACCATGA
ACTAAATCTTTCAGACGTGAATTTCAATGCACTCAGAACAAAACGTCCAC
CAGGAGTAGAAGACATGGAAAGTGATAGTGATATAAATGAAGACGCCAGT
GATTCATCGCAGAGTGAAAAAAGAAAAATGGAAGACGGAAAAACACCATT
TAATGAAATTGGACATCAAATGAAGGCCATTAGAAATGATTATAAAAAAG
GAATCTCCATTAGCAAGAGTGACGTCCTAAGCGGTGAAGCTCCACCTAGT
CCTGAGAAGAAATACTTGAGAAACTTTGAGTCCGATAAAATACAGCCCAA
CCTAACTCAAGAAGTGGATGAGAACAATATCGCACAGAGTCAAGATAATG
AGAAGAAAAAAGAAAAAATTGACGCGGATCGCATTCGGAAAGCAATAACT
GAAAGTCAGCAAAAGAATTTAACGGAAAAGGATGAGAAGAAGAAGAAAGT
CAGTGTAGTACATCTGGAAAAGGCAGTTTCAGTTTTTGATAGAGATAACA
AACGGGGACGTGAAGGTTCTGCAGCTAAGAACAGTACAGAAAGTTTTATG
CTTAAAAAGCAAAAGAAAAATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_647:49865..51838+

>Gvermi13795.t1 ID=Gvermi13795.t1|Name=Gvermi13795.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1974bp|location=Sequence derived from alignment at ScGOVlb_647:49865..51838+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCGCGTTCATTGGAAGTCCCGGTACCAAATTTCAACCATTTTCAGT
AGTGTTCACGTCCATGAATACGAAAGAAGAAGACACAAATTCTGCATGGA
GTTCTCATTTCAAACAATTAATAGACGGGATGGGACTTGCACTTCGATAT
CATAATATGGGAGTAAGAGAATTTTTAGCTTTGAACAGCATTTGCAATCA
AAGAGAGTTTGACCTCACAACGTATTTGTCAGGAAGACAAGGCCCGGAAG
CTATGAAAGAGTACGAAGGTCTTGATACCGACATAGAATTGCGTGTACTT
GGGAAACGTTCAACAAAAGAGCTCCATTATTTTGAACATTTTCAATTAGC
CCTCCAAGTCATTATGTCGGCTATACTGAGCCGACAGGTAGATGAAGAAT
ATGTTCTCCGGTGTTCAAGCCTAAAAGAAGAAGACTTCGGAGGAATACTA
AACGTTCAAATGGAAACATTGGGTTTCTTTGTTGTCGACATACCAAGCCT
TTGTGGCATGCGAGATTTCTTGCGAGTCGATAATGGGCGTCCTAAACTTG
TTAAAGACAGAGACTGCAGCTTCTTACTCGGTGATAGCGGAAAATCTTCA
TCTTTTCGGAAATGGACTCCGGAGATAGGGAAAGAAATATCTTCCAAAAC
TGATGAAATGGCTTACGTTGCATATACTGTGATTCCTTTATATGACGGCA
GTTTTCTGGACAAGAGTAATGTGGAAGAAATATATGTAACCGCCTGGGTC
ACGCGTGCCATTGTAAGCGGAATCGCTACAAAAAAGGCAGATGATAGTAC
CTTTAGAGGAGTATACTACGAATGGGCGCATTTTGACAGACGACTTGATA
ACTGTCTTTCATACAGACTTCACGCCGGAACTACTCTAATTGTTCCAGCA
TCAACTGTTGTAAGTTTCAAGGGCTCTTTGGTACATAATGTGCGGGTCTT
TGGAACAGTCATGAAAGCTTGGACAACTTCTAAACAAAAAGAAATAATTC
TTCAACACAAATGGGATAATATAGAAGAATCTTGCGAACGAAAAAAGCTT
TTTTTTGGAAGTACATATCCCAAACCAAAGAGCAAAGATCTAAAAAAGAT
GAACAGCGCCTGGCTTGAAAATGTACGTATGAGCGTTGGGGCGGTCCCAT
CGTTGAAGAGTTTGCATCCAATGTGCACCAACAGACAGCAAAGTCTAAAT
GTAATTGAAGAGACTCTTGACTCGACTTGCACCAGTCTTGGAGAAATTCT
AAAAAATAATCCAACGATAGTCGTCCGTCAAAATAGAAAAACAACGTTCA
AACATGGAGAACTAGAAGCCCAAGACGGATGGCTTGTTGAAGGTATTCCG
TACGCAAGGCTTTTTCAATGCTCCCATCGTTCAGATACCGCTCACCATGA
ACTAAATCTTTCAGACGTGAATTTCAATGCACTCAGAACAAAACGTCCAC
CAGGAGTAGAAGACATGGAAAGTGATAGTGATATAAATGAAGACGCCAGT
GATTCATCGCAGAGTGAAAAAAGAAAAATGGAAGACGGAAAAACACCATT
TAATGAAATTGGACATCAAATGAAGGCCATTAGAAATGATTATAAAAAAG
GAATCTCCATTAGCAAGAGTGACGTCCTAAGCGGTGAAGCTCCACCTAGT
CCTGAGAAGAAATACTTGAGAAACTTTGAGTCCGATAAAATACAGCCCAA
CCTAACTCAAGAAGTGGATGAGAACAATATCGCACAGAGTCAAGATAATG
AGAAGAAAAAAGAAAAAATTGACGCGGATCGCATTCGGAAAGCAATAACT
GAAAGTCAGCAAAAGAATTTAACGGAAAAGGATGAGAAGAAGAAGAAAGT
CAGTGTAGTACATCTGGAAAAGGCAGTTTCAGTTTTTGATAGAGATAACA
AACGGGGACGTGAAGGTTCTGCAGCTAAGAACAGTACAGAAAGTTTTATG
CTTAAAAAGCAAAAGAAAAATTAA
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