Gvermi13746.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13746.t1
Unique NameGvermi13746.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length301
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_4657contigScGOVlb_4657:1..902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog588596.U9TX39
Max annot lvl33154|Opisthokonta
Evalue6.74e-21
EggNOG OGs2APRF@1|root,2RZH9@2759|Eukaryota,3A1WH@33154|Opisthokonta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13746Gvermi13746Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_4657 1..902 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13746.t1.CDS1Gvermi13746.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_4657 1..902 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13746.t1.exon1Gvermi13746.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_4657 1..902 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13746.t1.start1Gvermi13746.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_4657 900..902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13746.t1Gvermi13746.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_4657 1..902 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13746.t1 ID=Gvermi13746.t1|Name=Gvermi13746.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=301bp
MKYAKKQAAADDSDDESSDDDGDLNYDAFEDIVQKAAKHVRQAEVQREEI
NRRIADAKQDRQNEVSFADQRRCMVMDFAQNLDFPHFGDEQPGDVYYLSP
KTVYVFGVADASFPSATLTAYCYQEETGAKGANNVASMVMEYLRQKEWIR
FDANGKPIKGKRLTIAADNCGGQNKNYVVLRMASYLVEKGHFDEVEILFY
IRGHTKNMCDRLFNLLKIEFHNQQVMTFNHLTDDNNLIAVLNRSDDFVEA
LAVESQTFEDWREYQEKLYKDFTRNTVNINHCFRVKSSVGATVMGTKTDA
X
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spliced messenger RNA

>Gvermi13746.t1 ID=Gvermi13746.t1|Name=Gvermi13746.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=902bp|location=Sequence derived from alignment at ScGOVlb_4657:1..902- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTACGCGAAGAAGCAGGCGGCTGCTGACGACTCCGACGACGAGAG
CAGTGATGACGACGGCGACTTGAACTACGATGCCTTTGAGGATATTGTCC
AGAAAGCCGCGAAGCACGTTCGCCAAGCAGAGGTTCAGCGGGAGGAGATC
AATCGGCGCATCGCTGATGCCAAGCAGGATCGCCAGAACGAGGTGTCTTT
TGCGGATCAACGTCGGTGCATGGTCATGGATTTTGCCCAGAATCTTGACT
TCCCACACTTTGGTGATGAGCAGCCTGGTGACGTTTACTACCTCAGTCCA
AAGACAGTCTACGTCTTTGGTGTGGCAGATGCATCTTTCCCATCAGCGAC
GCTCACGGCCTACTGCTACCAGGAGGAAACGGGAGCTAAGGGAGCGAACA
ATGTTGCGTCTATGGTCATGGAATACCTGCGCCAGAAGGAATGGATTCGA
TTTGACGCTAACGGGAAGCCCATTAAAGGCAAGCGGCTGACTATCGCTGC
AGACAACTGCGGTGGCCAAAACAAGAACTACGTTGTTTTACGGATGGCCT
CTTACTTGGTAGAAAAGGGGCACTTCGACGAGGTTGAGATTCTCTTCTAT
ATTCGAGGACACACGAAGAATATGTGCGACCGATTGTTCAATCTTTTGAA
GATCGAGTTCCATAACCAACAAGTCATGACGTTCAATCACCTCACGGACG
ATAACAACTTGATTGCCGTCCTCAATCGATCAGACGACTTCGTTGAGGCT
CTGGCTGTGGAATCCCAGACCTTTGAAGATTGGCGGGAGTACCAGGAGAA
ACTATACAAGGATTTTACGCGGAACACGGTGAATATAAATCATTGCTTTC
GGGTGAAAAGTTCTGTAGGAGCCACGGTGATGGGCACGAAGACGGACGCT
AG
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protein sequence of Gvermi13746.t1

>Gvermi13746.t1 ID=Gvermi13746.t1|Name=Gvermi13746.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=301bp
MKYAKKQAAADDSDDESSDDDGDLNYDAFEDIVQKAAKHVRQAEVQREEI
NRRIADAKQDRQNEVSFADQRRCMVMDFAQNLDFPHFGDEQPGDVYYLSP
KTVYVFGVADASFPSATLTAYCYQEETGAKGANNVASMVMEYLRQKEWIR
FDANGKPIKGKRLTIAADNCGGQNKNYVVLRMASYLVEKGHFDEVEILFY
IRGHTKNMCDRLFNLLKIEFHNQQVMTFNHLTDDNNLIAVLNRSDDFVEA
LAVESQTFEDWREYQEKLYKDFTRNTVNINHCFRVKSSVGATVMGTKTDA
X
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mRNA from alignment at ScGOVlb_4657:1..902-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13746.t1 ID=Gvermi13746.t1|Name=Gvermi13746.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=902bp|location=Sequence derived from alignment at ScGOVlb_4657:1..902- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGTACGCGAAGAAGCAGGCGGCTGCTGACGACTCCGACGACGAGAG
CAGTGATGACGACGGCGACTTGAACTACGATGCCTTTGAGGATATTGTCC
AGAAAGCCGCGAAGCACGTTCGCCAAGCAGAGGTTCAGCGGGAGGAGATC
AATCGGCGCATCGCTGATGCCAAGCAGGATCGCCAGAACGAGGTGTCTTT
TGCGGATCAACGTCGGTGCATGGTCATGGATTTTGCCCAGAATCTTGACT
TCCCACACTTTGGTGATGAGCAGCCTGGTGACGTTTACTACCTCAGTCCA
AAGACAGTCTACGTCTTTGGTGTGGCAGATGCATCTTTCCCATCAGCGAC
GCTCACGGCCTACTGCTACCAGGAGGAAACGGGAGCTAAGGGAGCGAACA
ATGTTGCGTCTATGGTCATGGAATACCTGCGCCAGAAGGAATGGATTCGA
TTTGACGCTAACGGGAAGCCCATTAAAGGCAAGCGGCTGACTATCGCTGC
AGACAACTGCGGTGGCCAAAACAAGAACTACGTTGTTTTACGGATGGCCT
CTTACTTGGTAGAAAAGGGGCACTTCGACGAGGTTGAGATTCTCTTCTAT
ATTCGAGGACACACGAAGAATATGTGCGACCGATTGTTCAATCTTTTGAA
GATCGAGTTCCATAACCAACAAGTCATGACGTTCAATCACCTCACGGACG
ATAACAACTTGATTGCCGTCCTCAATCGATCAGACGACTTCGTTGAGGCT
CTGGCTGTGGAATCCCAGACCTTTGAAGATTGGCGGGAGTACCAGGAGAA
ACTATACAAGGATTTTACGCGGAACACGGTGAATATAAATCATTGCTTTC
GGGTGAAAAGTTCTGTAGGAGCCACGGTGATGGGCACGAAGACGGACGCT
AG
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Coding sequence (CDS) from alignment at ScGOVlb_4657:1..902-

>Gvermi13746.t1 ID=Gvermi13746.t1|Name=Gvermi13746.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=902bp|location=Sequence derived from alignment at ScGOVlb_4657:1..902- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGTACGCGAAGAAGCAGGCGGCTGCTGACGACTCCGACGACGAGAG
CAGTGATGACGACGGCGACTTGAACTACGATGCCTTTGAGGATATTGTCC
AGAAAGCCGCGAAGCACGTTCGCCAAGCAGAGGTTCAGCGGGAGGAGATC
AATCGGCGCATCGCTGATGCCAAGCAGGATCGCCAGAACGAGGTGTCTTT
TGCGGATCAACGTCGGTGCATGGTCATGGATTTTGCCCAGAATCTTGACT
TCCCACACTTTGGTGATGAGCAGCCTGGTGACGTTTACTACCTCAGTCCA
AAGACAGTCTACGTCTTTGGTGTGGCAGATGCATCTTTCCCATCAGCGAC
GCTCACGGCCTACTGCTACCAGGAGGAAACGGGAGCTAAGGGAGCGAACA
ATGTTGCGTCTATGGTCATGGAATACCTGCGCCAGAAGGAATGGATTCGA
TTTGACGCTAACGGGAAGCCCATTAAAGGCAAGCGGCTGACTATCGCTGC
AGACAACTGCGGTGGCCAAAACAAGAACTACGTTGTTTTACGGATGGCCT
CTTACTTGGTAGAAAAGGGGCACTTCGACGAGGTTGAGATTCTCTTCTAT
ATTCGAGGACACACGAAGAATATGTGCGACCGATTGTTCAATCTTTTGAA
GATCGAGTTCCATAACCAACAAGTCATGACGTTCAATCACCTCACGGACG
ATAACAACTTGATTGCCGTCCTCAATCGATCAGACGACTTCGTTGAGGCT
CTGGCTGTGGAATCCCAGACCTTTGAAGATTGGCGGGAGTACCAGGAGAA
ACTATACAAGGATTTTACGCGGAACACGGTGAATATAAATCATTGCTTTC
GGGTGAAAAGTTCTGTAGGAGCCACGGTGATGGGCACGAAGACGGACGCT
AG
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