Gvermi13725.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13725.t1
Unique NameGvermi13725.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length316
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_4625contigScGOVlb_4625:185..1132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13725Gvermi13725Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_4625 185..1132 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13725.t1.start1Gvermi13725.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_4625 185..187 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13725.t1.CDS1Gvermi13725.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_4625 185..1132 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13725.t1.exon1Gvermi13725.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_4625 185..1132 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13725.t1Gvermi13725.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_4625 185..1132 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13725.t1 ID=Gvermi13725.t1|Name=Gvermi13725.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=316bp
MPSILPSSTPSLSPTSNPSSMPSREPTNDPSSSPSEWPSSAPSSSPSEAD
YPFIISGMLQLVEDVPKLVGMDITVMLDVSRMDPIGSICIDGFPVGSLVT
YPLLNGTVRTFSATASKAEVCIDEGDSNQIAMALEGLSVRAPPQSDNDFT
LVVEATAATNRTNIVGSADVLVTVLAVADRPMVGSEMQLDVDENVPEKLY
VSVNSSADDSDSDNSECVFVRFTVGMDSGSAIGSLSVPSTPPGVTFTVDA
GNSSVYFVNATGATPGDREALLEFFLADENNGVVFTPRFQLNGTFVAGIV
VEAVSEEKNDVAPSNS
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spliced messenger RNA

>Gvermi13725.t1 ID=Gvermi13725.t1|Name=Gvermi13725.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=948bp|location=Sequence derived from alignment at ScGOVlb_4625:185..1132+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCCATTCTACCGAGTTCCACTCCCAGCTTGTCGCCCACGTCCAA
TCCGAGTTCTATGCCATCAAGAGAACCGACTAATGACCCTAGTTCCTCGC
CGTCCGAATGGCCTTCGTCTGCTCCAAGCTCTTCCCCGTCAGAGGCCGAC
TACCCTTTCATAATCAGTGGCATGCTTCAACTGGTGGAAGATGTTCCTAA
ATTGGTTGGAATGGACATCACTGTCATGTTGGACGTGTCTCGCATGGACC
CGATCGGCTCCATTTGCATCGACGGATTCCCCGTTGGGTCGCTTGTAACG
TACCCATTGCTGAATGGCACTGTGAGGACCTTTAGCGCGACAGCTAGCAA
GGCAGAGGTTTGCATCGACGAAGGTGACAGTAACCAGATCGCCATGGCGT
TGGAGGGTCTTAGCGTTCGAGCCCCGCCACAATCCGACAATGACTTTACT
TTGGTAGTGGAAGCGACTGCAGCCACCAACAGAACCAACATTGTTGGCTC
CGCTGACGTTCTCGTTACAGTCCTCGCTGTCGCCGACCGGCCAATGGTTG
GATCAGAGATGCAGCTCGACGTGGACGAGAACGTACCGGAAAAGCTTTAC
GTCTCCGTAAATAGCAGTGCGGACGACAGCGATTCGGATAATAGCGAATG
CGTTTTCGTTCGCTTCACGGTTGGTATGGACAGCGGATCGGCTATCGGTA
GCCTTTCAGTTCCATCAACGCCGCCGGGAGTGACGTTTACCGTCGATGCC
GGAAATTCCAGTGTGTACTTTGTCAATGCCACGGGCGCCACTCCAGGAGA
TCGAGAGGCGCTGCTCGAGTTTTTCCTAGCAGACGAAAACAACGGCGTCG
TCTTTACGCCTCGGTTTCAATTGAACGGGACCTTCGTGGCCGGAATTGTG
GTCGAAGCCGTTAGCGAGGAGAAGAACGACGTTGCGCCGTCGAACAGC
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protein sequence of Gvermi13725.t1

>Gvermi13725.t1 ID=Gvermi13725.t1|Name=Gvermi13725.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=316bp
MPSILPSSTPSLSPTSNPSSMPSREPTNDPSSSPSEWPSSAPSSSPSEAD
YPFIISGMLQLVEDVPKLVGMDITVMLDVSRMDPIGSICIDGFPVGSLVT
YPLLNGTVRTFSATASKAEVCIDEGDSNQIAMALEGLSVRAPPQSDNDFT
LVVEATAATNRTNIVGSADVLVTVLAVADRPMVGSEMQLDVDENVPEKLY
VSVNSSADDSDSDNSECVFVRFTVGMDSGSAIGSLSVPSTPPGVTFTVDA
GNSSVYFVNATGATPGDREALLEFFLADENNGVVFTPRFQLNGTFVAGIV
VEAVSEEKNDVAPSNS
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mRNA from alignment at ScGOVlb_4625:185..1132+

Legend: start_codonpolypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13725.t1 ID=Gvermi13725.t1|Name=Gvermi13725.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=948bp|location=Sequence derived from alignment at ScGOVlb_4625:185..1132+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTCCATTCTACCGAGTTCCACTCCCAGCTTGTCGCCCACGTCCAA
TCCGAGTTCTATGCCATCAAGAGAACCGACTAATGACCCTAGTTCCTCGC
CGTCCGAATGGCCTTCGTCTGCTCCAAGCTCTTCCCCGTCAGAGGCCGAC
TACCCTTTCATAATCAGTGGCATGCTTCAACTGGTGGAAGATGTTCCTAA
ATTGGTTGGAATGGACATCACTGTCATGTTGGACGTGTCTCGCATGGACC
CGATCGGCTCCATTTGCATCGACGGATTCCCCGTTGGGTCGCTTGTAACG
TACCCATTGCTGAATGGCACTGTGAGGACCTTTAGCGCGACAGCTAGCAA
GGCAGAGGTTTGCATCGACGAAGGTGACAGTAACCAGATCGCCATGGCGT
TGGAGGGTCTTAGCGTTCGAGCCCCGCCACAATCCGACAATGACTTTACT
TTGGTAGTGGAAGCGACTGCAGCCACCAACAGAACCAACATTGTTGGCTC
CGCTGACGTTCTCGTTACAGTCCTCGCTGTCGCCGACCGGCCAATGGTTG
GATCAGAGATGCAGCTCGACGTGGACGAGAACGTACCGGAAAAGCTTTAC
GTCTCCGTAAATAGCAGTGCGGACGACAGCGATTCGGATAATAGCGAATG
CGTTTTCGTTCGCTTCACGGTTGGTATGGACAGCGGATCGGCTATCGGTA
GCCTTTCAGTTCCATCAACGCCGCCGGGAGTGACGTTTACCGTCGATGCC
GGAAATTCCAGTGTGTACTTTGTCAATGCCACGGGCGCCACTCCAGGAGA
TCGAGAGGCGCTGCTCGAGTTTTTCCTAGCAGACGAAAACAACGGCGTCG
TCTTTACGCCTCGGTTTCAATTGAACGGGACCTTCGTGGCCGGAATTGTG
GTCGAAGCCGTTAGCGAGGAGAAGAACGACGTTGCGCCGTCGAACAGC
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Coding sequence (CDS) from alignment at ScGOVlb_4625:185..1132+

>Gvermi13725.t1 ID=Gvermi13725.t1|Name=Gvermi13725.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=948bp|location=Sequence derived from alignment at ScGOVlb_4625:185..1132+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTCCATTCTACCGAGTTCCACTCCCAGCTTGTCGCCCACGTCCAA
TCCGAGTTCTATGCCATCAAGAGAACCGACTAATGACCCTAGTTCCTCGC
CGTCCGAATGGCCTTCGTCTGCTCCAAGCTCTTCCCCGTCAGAGGCCGAC
TACCCTTTCATAATCAGTGGCATGCTTCAACTGGTGGAAGATGTTCCTAA
ATTGGTTGGAATGGACATCACTGTCATGTTGGACGTGTCTCGCATGGACC
CGATCGGCTCCATTTGCATCGACGGATTCCCCGTTGGGTCGCTTGTAACG
TACCCATTGCTGAATGGCACTGTGAGGACCTTTAGCGCGACAGCTAGCAA
GGCAGAGGTTTGCATCGACGAAGGTGACAGTAACCAGATCGCCATGGCGT
TGGAGGGTCTTAGCGTTCGAGCCCCGCCACAATCCGACAATGACTTTACT
TTGGTAGTGGAAGCGACTGCAGCCACCAACAGAACCAACATTGTTGGCTC
CGCTGACGTTCTCGTTACAGTCCTCGCTGTCGCCGACCGGCCAATGGTTG
GATCAGAGATGCAGCTCGACGTGGACGAGAACGTACCGGAAAAGCTTTAC
GTCTCCGTAAATAGCAGTGCGGACGACAGCGATTCGGATAATAGCGAATG
CGTTTTCGTTCGCTTCACGGTTGGTATGGACAGCGGATCGGCTATCGGTA
GCCTTTCAGTTCCATCAACGCCGCCGGGAGTGACGTTTACCGTCGATGCC
GGAAATTCCAGTGTGTACTTTGTCAATGCCACGGGCGCCACTCCAGGAGA
TCGAGAGGCGCTGCTCGAGTTTTTCCTAGCAGACGAAAACAACGGCGTCG
TCTTTACGCCTCGGTTTCAATTGAACGGGACCTTCGTGGCCGGAATTGTG
GTCGAAGCCGTTAGCGAGGAGAAGAACGACGTTGCGCCGTCGAACAGC
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