Gvermi13724.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13724.t1
Unique NameGvermi13724.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length38
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_218contigScGOVlb_218:4279..4547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13724Gvermi13724Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_218 4279..4547 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13724.t1Gvermi13724.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_218 4279..4547 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13724.t1.stop1Gvermi13724.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_218 4279..4281 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13724.t1.CDS1Gvermi13724.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_218 4279..4355 -
Gvermi13724.t1.CDS2Gvermi13724.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_218 4513..4547 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13724.t1.exon1Gvermi13724.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_218 4279..4355 -
Gvermi13724.t1.exon2Gvermi13724.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_218 4513..4547 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13724.t1.intron1Gvermi13724.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_218 4356..4512 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13724.t1 ID=Gvermi13724.t1|Name=Gvermi13724.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=38bp
XGRRSRNKVSVGEPAEGSLTYIYNPNPQTLVLTHSRD*
back to top

spliced messenger RNA

>Gvermi13724.t1 ID=Gvermi13724.t1|Name=Gvermi13724.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=112bp|location=Sequence derived from alignment at ScGOVlb_218:4279..4547- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
AGGAAGGAGAAGTCGTAACAAGGTCTCCGTAGGTGAACCTGCGGAGGGAT
CATTAACGTACATATACAACCCAAACCCCCAAACCTTGGTTCTCACACAC
AGCCGGGACTGA
back to top

protein sequence of Gvermi13724.t1

>Gvermi13724.t1 ID=Gvermi13724.t1|Name=Gvermi13724.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=38bp
XGRRSRNKVSVGEPAEGSLTYIYNPNPQTLVLTHSRD*
back to top

mRNA from alignment at ScGOVlb_218:4279..4547-

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13724.t1 ID=Gvermi13724.t1|Name=Gvermi13724.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=269bp|location=Sequence derived from alignment at ScGOVlb_218:4279..4547- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
AGGAAGGAGAAGTCGTAACAAGGTCTCCGTAGGTGGTAAGCAAAACTTTT
CTGTTTTTTTTTTTTTTTTTTGATGATGATGATGATGATGTTTGTGTGAA
TATGTGTGTGCATGGTGTGGAGACCGACACTTTTTTTTTTCAGCTCCTCA
TCCACTTTCCCCCCCTCCTTTACCTTTCCACTTAAAAAACAGAACCTGCG
GAGGGATCATTAACGTACATATACAACCCAAACCCCCAAACCTTGGTTCT
CACACACAGCCGGGACTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_218:4279..4547-

>Gvermi13724.t1 ID=Gvermi13724.t1|Name=Gvermi13724.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=112bp|location=Sequence derived from alignment at ScGOVlb_218:4279..4547- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
AGGAAGGAGAAGTCGTAACAAGGTCTCCGTAGGTGAACCTGCGGAGGGAT
CATTAACGTACATATACAACCCAAACCCCCAAACCTTGGTTCTCACACAC
AGCCGGGACTGA
back to top