Gvermi13693.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi13693.t1
Unique Name	Gvermi13693.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	427

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3232	contig	ScGOVlb_3232:1..1280 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	221103.XP_007854214.1
Max annot lvl	4751\|Fungi
Evalue	2e-05
EggNOG OGs	2EWHF@1\|root,2SYB6@2759\|Eukaryota,3AY82@33154\|Opisthokonta,3PJD2@4751\|Fungi,3V3CE@5204\|Basidiomycota,229J2@155619\|Agaricomycetes,3W3NN@5338\|Agaricales
Description	Expressed protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi13693	Gvermi13693	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3232 1..1280 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13693.t1.CDS1	Gvermi13693.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3232 1..1280 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13693.t1.exon1	Gvermi13693.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3232 1..1280 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13693.t1.start1	Gvermi13693.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3232 1278..1280 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13693.t1	Gvermi13693.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3232 1..1280 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3232:1..1280-
coding sequence from alignment at ScGOVlb_3232:1..1280-

mRNA sequence

>Gvermi13693.t1 ID=Gvermi13693.t1|Name=Gvermi13693.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=427bp
MYRYISKNSPHGPTSIYGTSGAGKTRGAFEYLSCNWGIYLTFHGSTVNPG
SKAMDHVLNYLAKLKPEGLEKILEDDDENHRQIKDIANQDIVRQVLSCVL
YVRWRVLRSLRDSLGDKFKPYHWLLIQLHPQQFFDKHDIFQEMTEEITSS
CAATTQGNIALRILLKNEGDGVNTVFVDETQVLCEELKEGYFISTNSTET
SRSAYSAFLVAFTRINSSFSTKIGYPIMMGTSLSYSSIETKGSAMVKVSL
TQYQDMFSSLQVLNPEHVITYIEKVANLESVDKKVSGHVGRWLQGRPYWT
ATFLSMWMSGKLDAKNNMPSCNSEMNQESKDLLALIENFVELMARRDAEG
TQDSWNFSSLMPRTAIQELTSRQELADLTIFFERAVSNFALHGSAFVHGE
FYTDKIAQLPTHELVKIGVARCEKATX

spliced messenger RNA

>Gvermi13693.t1 ID=Gvermi13693.t1|Name=Gvermi13693.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1280bp|location=Sequence derived from alignment at ScGOVlb_3232:1..1280- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATCGGTATATCTCGAAGAACAGCCCCCACGGTCCCACGTCGATTTA
CGGAACCTCTGGTGCAGGCAAGACGCGCGGTGCATTCGAGTACTTGAGCT
GCAATTGGGGGATCTACTTGACCTTCCATGGGTCGACAGTCAACCCTGGC
TCGAAGGCTATGGACCACGTGCTGAATTACCTCGCGAAACTGAAACCTGA
AGGTCTTGAGAAAATCTTAGAGGATGATGATGAGAATCATCGTCAGATCA
AGGACATCGCAAATCAAGATATTGTAAGGCAGGTCCTGTCGTGTGTTTTG
TACGTACGTTGGAGAGTTTTGAGGAGTCTGCGTGACTCACTCGGGGACAA
GTTTAAGCCGTACCACTGGCTCCTCATTCAGCTCCACCCGCAACAGTTCT
TCGATAAACATGATATCTTCCAGGAAATGACGGAAGAGATCACCTCGTCC
TGTGCTGCAACCACCCAAGGCAACATAGCCCTTCGTATTTTGCTCAAGAA
TGAAGGAGATGGAGTAAATACTGTCTTTGTGGATGAGACGCAAGTACTGT
GCGAGGAATTGAAGGAAGGCTACTTCATCTCTACAAATTCTACGGAGACC
TCGAGATCTGCGTACTCCGCTTTCTTGGTGGCATTTACAAGAATTAATTC
AAGTTTCTCTACAAAGATTGGGTATCCTATAATGATGGGTACCAGTCTCT
CGTACTCTTCAATCGAAACAAAGGGGAGTGCTATGGTCAAGGTATCCCTG
ACACAGTACCAAGACATGTTCTCGTCACTCCAAGTTTTGAATCCGGAGCA
CGTAATTACATACATCGAAAAAGTTGCCAACTTGGAAAGCGTGGACAAGA
AGGTATCCGGTCATGTGGGTCGGTGGCTGCAGGGCCGACCTTACTGGACG
GCAACTTTTTTGAGTATGTGGATGAGCGGGAAGCTCGATGCAAAGAATAA
CATGCCCTCCTGTAACAGCGAAATGAACCAAGAATCTAAGGATCTACTGG
CGCTGATCGAAAATTTTGTGGAATTGATGGCGAGACGTGATGCAGAAGGG
ACTCAGGACTCTTGGAATTTCAGCAGCCTCATGCCACGGACGGCAATTCA
GGAGCTTACTTCACGACAGGAATTGGCAGATCTCACGATTTTTTTTGAAC
GGGCAGTGTCGAATTTTGCCCTACATGGCAGTGCATTTGTACACGGCGAA
TTTTATACCGACAAAATTGCTCAACTTCCCACTCATGAACTTGTAAAGAT
AGGCGTGGCGCGATGTGAAAAGGCGACTAA

protein sequence of Gvermi13693.t1

>Gvermi13693.t1 ID=Gvermi13693.t1|Name=Gvermi13693.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=427bp
MYRYISKNSPHGPTSIYGTSGAGKTRGAFEYLSCNWGIYLTFHGSTVNPG
SKAMDHVLNYLAKLKPEGLEKILEDDDENHRQIKDIANQDIVRQVLSCVL
YVRWRVLRSLRDSLGDKFKPYHWLLIQLHPQQFFDKHDIFQEMTEEITSS
CAATTQGNIALRILLKNEGDGVNTVFVDETQVLCEELKEGYFISTNSTET
SRSAYSAFLVAFTRINSSFSTKIGYPIMMGTSLSYSSIETKGSAMVKVSL
TQYQDMFSSLQVLNPEHVITYIEKVANLESVDKKVSGHVGRWLQGRPYWT
ATFLSMWMSGKLDAKNNMPSCNSEMNQESKDLLALIENFVELMARRDAEG
TQDSWNFSSLMPRTAIQELTSRQELADLTIFFERAVSNFALHGSAFVHGE
FYTDKIAQLPTHELVKIGVARCEKATX

mRNA from alignment at ScGOVlb_3232:1..1280-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi13693.t1 ID=Gvermi13693.t1|Name=Gvermi13693.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1280bp|location=Sequence derived from alignment at ScGOVlb_3232:1..1280- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTATCGGTATATCTCGAAGAACAGCCCCCACGGTCCCACGTCGATTTA
CGGAACCTCTGGTGCAGGCAAGACGCGCGGTGCATTCGAGTACTTGAGCT
GCAATTGGGGGATCTACTTGACCTTCCATGGGTCGACAGTCAACCCTGGC
TCGAAGGCTATGGACCACGTGCTGAATTACCTCGCGAAACTGAAACCTGA
AGGTCTTGAGAAAATCTTAGAGGATGATGATGAGAATCATCGTCAGATCA
AGGACATCGCAAATCAAGATATTGTAAGGCAGGTCCTGTCGTGTGTTTTG
TACGTACGTTGGAGAGTTTTGAGGAGTCTGCGTGACTCACTCGGGGACAA
GTTTAAGCCGTACCACTGGCTCCTCATTCAGCTCCACCCGCAACAGTTCT
TCGATAAACATGATATCTTCCAGGAAATGACGGAAGAGATCACCTCGTCC
TGTGCTGCAACCACCCAAGGCAACATAGCCCTTCGTATTTTGCTCAAGAA
TGAAGGAGATGGAGTAAATACTGTCTTTGTGGATGAGACGCAAGTACTGT
GCGAGGAATTGAAGGAAGGCTACTTCATCTCTACAAATTCTACGGAGACC
TCGAGATCTGCGTACTCCGCTTTCTTGGTGGCATTTACAAGAATTAATTC
AAGTTTCTCTACAAAGATTGGGTATCCTATAATGATGGGTACCAGTCTCT
CGTACTCTTCAATCGAAACAAAGGGGAGTGCTATGGTCAAGGTATCCCTG
ACACAGTACCAAGACATGTTCTCGTCACTCCAAGTTTTGAATCCGGAGCA
CGTAATTACATACATCGAAAAAGTTGCCAACTTGGAAAGCGTGGACAAGA
AGGTATCCGGTCATGTGGGTCGGTGGCTGCAGGGCCGACCTTACTGGACG
GCAACTTTTTTGAGTATGTGGATGAGCGGGAAGCTCGATGCAAAGAATAA
CATGCCCTCCTGTAACAGCGAAATGAACCAAGAATCTAAGGATCTACTGG
CGCTGATCGAAAATTTTGTGGAATTGATGGCGAGACGTGATGCAGAAGGG
ACTCAGGACTCTTGGAATTTCAGCAGCCTCATGCCACGGACGGCAATTCA
GGAGCTTACTTCACGACAGGAATTGGCAGATCTCACGATTTTTTTTGAAC
GGGCAGTGTCGAATTTTGCCCTACATGGCAGTGCATTTGTACACGGCGAA
TTTTATACCGACAAAATTGCTCAACTTCCCACTCATGAACTTGTAAAGAT
AGGCGTGGCGCGATGTGAAAAGGCGACTAA

Coding sequence (CDS) from alignment at ScGOVlb_3232:1..1280-

>Gvermi13693.t1 ID=Gvermi13693.t1|Name=Gvermi13693.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1280bp|location=Sequence derived from alignment at ScGOVlb_3232:1..1280- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTATCGGTATATCTCGAAGAACAGCCCCCACGGTCCCACGTCGATTTA
CGGAACCTCTGGTGCAGGCAAGACGCGCGGTGCATTCGAGTACTTGAGCT
GCAATTGGGGGATCTACTTGACCTTCCATGGGTCGACAGTCAACCCTGGC
TCGAAGGCTATGGACCACGTGCTGAATTACCTCGCGAAACTGAAACCTGA
AGGTCTTGAGAAAATCTTAGAGGATGATGATGAGAATCATCGTCAGATCA
AGGACATCGCAAATCAAGATATTGTAAGGCAGGTCCTGTCGTGTGTTTTG
TACGTACGTTGGAGAGTTTTGAGGAGTCTGCGTGACTCACTCGGGGACAA
GTTTAAGCCGTACCACTGGCTCCTCATTCAGCTCCACCCGCAACAGTTCT
TCGATAAACATGATATCTTCCAGGAAATGACGGAAGAGATCACCTCGTCC
TGTGCTGCAACCACCCAAGGCAACATAGCCCTTCGTATTTTGCTCAAGAA
TGAAGGAGATGGAGTAAATACTGTCTTTGTGGATGAGACGCAAGTACTGT
GCGAGGAATTGAAGGAAGGCTACTTCATCTCTACAAATTCTACGGAGACC
TCGAGATCTGCGTACTCCGCTTTCTTGGTGGCATTTACAAGAATTAATTC
AAGTTTCTCTACAAAGATTGGGTATCCTATAATGATGGGTACCAGTCTCT
CGTACTCTTCAATCGAAACAAAGGGGAGTGCTATGGTCAAGGTATCCCTG
ACACAGTACCAAGACATGTTCTCGTCACTCCAAGTTTTGAATCCGGAGCA
CGTAATTACATACATCGAAAAAGTTGCCAACTTGGAAAGCGTGGACAAGA
AGGTATCCGGTCATGTGGGTCGGTGGCTGCAGGGCCGACCTTACTGGACG
GCAACTTTTTTGAGTATGTGGATGAGCGGGAAGCTCGATGCAAAGAATAA
CATGCCCTCCTGTAACAGCGAAATGAACCAAGAATCTAAGGATCTACTGG
CGCTGATCGAAAATTTTGTGGAATTGATGGCGAGACGTGATGCAGAAGGG
ACTCAGGACTCTTGGAATTTCAGCAGCCTCATGCCACGGACGGCAATTCA
GGAGCTTACTTCACGACAGGAATTGGCAGATCTCACGATTTTTTTTGAAC
GGGCAGTGTCGAATTTTGCCCTACATGGCAGTGCATTTGTACACGGCGAA
TTTTATACCGACAAAATTGCTCAACTTCCCACTCATGAACTTGTAAAGAT
AGGCGTGGCGCGATGTGAAAAGGCGACTAA