Gvermi13692.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13692.t1
Unique NameGvermi13692.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length406
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3454contigScGOVlb_3454:1..1218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13692Gvermi13692Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3454 1..1218 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13692.t1.CDS1Gvermi13692.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3454 1..1218 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13692.t1.exon1Gvermi13692.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3454 1..1218 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13692.t1.start1Gvermi13692.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3454 1216..1218 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13692.t1Gvermi13692.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3454 1..1218 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13692.t1 ID=Gvermi13692.t1|Name=Gvermi13692.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=406bp
MGGLLRLFRSEFFDTLFGKYTDATEAIGNQFDAIQTAYLGSLGLDHIDPW
AGTDQEGRDDAPGYTQIHGRSGLTSTFSAPTVLGSDIWDLYHFNTIPELT
AALENSENASGGIPTVELRVGSNGFFYENDVEMSFRIIIENPGGTDYTFN
RRVVFRMTSFGSPVYVGTDSSAHDLFDQTPVFWFNIALQFYTGESLAGTS
FNTFNGLGDQITLEFVSDDMQFGSETAATQYINQRLDDLQDEVWNESIGN
SVYTALESERDSWETIIQAYIELGLPDVFEQSTAVASAFRGATIGNEIAL
AQPLDNWFMSMLGDGDNGQFVDVQTDFATRAQIVRDEINATISPDMVSNS
PVQGHSMIEWTLSELRNLRVNAFKLAIDDTYTSSNGSLSVGANEGLITND
VDQEYR
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spliced messenger RNA

>Gvermi13692.t1 ID=Gvermi13692.t1|Name=Gvermi13692.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1218bp|location=Sequence derived from alignment at ScGOVlb_3454:1..1218- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGGGCTGCTGCGCCTCTTCCGCTCCGAGTTCTTCGACACGCTGTT
CGGGAAGTACACCGACGCGACCGAAGCGATCGGAAATCAGTTTGACGCGA
TCCAGACGGCGTACCTCGGGAGTCTGGGGCTCGATCACATCGACCCTTGG
GCCGGGACTGATCAGGAAGGGCGGGACGATGCGCCGGGTTACACCCAGAT
CCATGGACGGAGCGGGCTCACTTCAACATTCTCGGCTCCGACCGTTCTTG
GGAGCGACATCTGGGATCTCTACCACTTCAACACCATCCCCGAACTCACG
GCGGCGCTCGAAAACTCCGAGAACGCCAGCGGCGGAATCCCAACAGTCGA
GCTCCGTGTTGGCTCCAATGGATTCTTTTACGAAAATGATGTCGAGATGT
CGTTCAGAATCATCATCGAGAATCCCGGAGGAACGGACTACACATTCAAC
CGCCGAGTGGTTTTCCGGATGACCAGCTTTGGTTCGCCGGTCTATGTGGG
CACCGACTCGAGTGCACATGACCTCTTTGATCAGACCCCGGTCTTCTGGT
TCAACATCGCCCTCCAGTTCTATACCGGAGAGAGTCTCGCGGGGACTTCG
TTTAACACATTCAACGGGCTCGGCGACCAGATCACGCTTGAGTTTGTATC
CGACGACATGCAGTTTGGTTCAGAAACTGCAGCGACACAGTACATCAACC
AGCGACTCGATGATCTCCAAGACGAAGTCTGGAATGAATCAATCGGAAAC
TCGGTGTACACAGCACTCGAGTCCGAGCGTGACAGCTGGGAAACGATCAT
CCAAGCATACATCGAGCTTGGGCTCCCCGATGTCTTTGAGCAGAGCACGG
CCGTCGCCAGCGCGTTCCGTGGGGCGACGATCGGCAACGAGATCGCCCTT
GCCCAGCCCCTCGATAATTGGTTTATGTCGATGCTCGGCGATGGGGACAA
TGGTCAGTTCGTCGATGTCCAGACCGACTTCGCGACTCGTGCTCAGATCG
TCCGAGACGAGATCAACGCGACCATCAGCCCCGATATGGTGTCAAATAGC
CCAGTTCAGGGTCACAGCATGATCGAGTGGACACTGTCCGAGCTCCGCAA
CCTGCGGGTCAATGCGTTCAAACTCGCGATCGATGACACCTACACCTCAA
GCAATGGCTCACTCAGTGTCGGAGCAAATGAGGGCTTGATCACCAATGAT
GTGGATCAGGAGTACCGC
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protein sequence of Gvermi13692.t1

>Gvermi13692.t1 ID=Gvermi13692.t1|Name=Gvermi13692.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=406bp
MGGLLRLFRSEFFDTLFGKYTDATEAIGNQFDAIQTAYLGSLGLDHIDPW
AGTDQEGRDDAPGYTQIHGRSGLTSTFSAPTVLGSDIWDLYHFNTIPELT
AALENSENASGGIPTVELRVGSNGFFYENDVEMSFRIIIENPGGTDYTFN
RRVVFRMTSFGSPVYVGTDSSAHDLFDQTPVFWFNIALQFYTGESLAGTS
FNTFNGLGDQITLEFVSDDMQFGSETAATQYINQRLDDLQDEVWNESIGN
SVYTALESERDSWETIIQAYIELGLPDVFEQSTAVASAFRGATIGNEIAL
AQPLDNWFMSMLGDGDNGQFVDVQTDFATRAQIVRDEINATISPDMVSNS
PVQGHSMIEWTLSELRNLRVNAFKLAIDDTYTSSNGSLSVGANEGLITND
VDQEYR
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mRNA from alignment at ScGOVlb_3454:1..1218-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13692.t1 ID=Gvermi13692.t1|Name=Gvermi13692.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1218bp|location=Sequence derived from alignment at ScGOVlb_3454:1..1218- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCGGGCTGCTGCGCCTCTTCCGCTCCGAGTTCTTCGACACGCTGTT
CGGGAAGTACACCGACGCGACCGAAGCGATCGGAAATCAGTTTGACGCGA
TCCAGACGGCGTACCTCGGGAGTCTGGGGCTCGATCACATCGACCCTTGG
GCCGGGACTGATCAGGAAGGGCGGGACGATGCGCCGGGTTACACCCAGAT
CCATGGACGGAGCGGGCTCACTTCAACATTCTCGGCTCCGACCGTTCTTG
GGAGCGACATCTGGGATCTCTACCACTTCAACACCATCCCCGAACTCACG
GCGGCGCTCGAAAACTCCGAGAACGCCAGCGGCGGAATCCCAACAGTCGA
GCTCCGTGTTGGCTCCAATGGATTCTTTTACGAAAATGATGTCGAGATGT
CGTTCAGAATCATCATCGAGAATCCCGGAGGAACGGACTACACATTCAAC
CGCCGAGTGGTTTTCCGGATGACCAGCTTTGGTTCGCCGGTCTATGTGGG
CACCGACTCGAGTGCACATGACCTCTTTGATCAGACCCCGGTCTTCTGGT
TCAACATCGCCCTCCAGTTCTATACCGGAGAGAGTCTCGCGGGGACTTCG
TTTAACACATTCAACGGGCTCGGCGACCAGATCACGCTTGAGTTTGTATC
CGACGACATGCAGTTTGGTTCAGAAACTGCAGCGACACAGTACATCAACC
AGCGACTCGATGATCTCCAAGACGAAGTCTGGAATGAATCAATCGGAAAC
TCGGTGTACACAGCACTCGAGTCCGAGCGTGACAGCTGGGAAACGATCAT
CCAAGCATACATCGAGCTTGGGCTCCCCGATGTCTTTGAGCAGAGCACGG
CCGTCGCCAGCGCGTTCCGTGGGGCGACGATCGGCAACGAGATCGCCCTT
GCCCAGCCCCTCGATAATTGGTTTATGTCGATGCTCGGCGATGGGGACAA
TGGTCAGTTCGTCGATGTCCAGACCGACTTCGCGACTCGTGCTCAGATCG
TCCGAGACGAGATCAACGCGACCATCAGCCCCGATATGGTGTCAAATAGC
CCAGTTCAGGGTCACAGCATGATCGAGTGGACACTGTCCGAGCTCCGCAA
CCTGCGGGTCAATGCGTTCAAACTCGCGATCGATGACACCTACACCTCAA
GCAATGGCTCACTCAGTGTCGGAGCAAATGAGGGCTTGATCACCAATGAT
GTGGATCAGGAGTACCGC
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Coding sequence (CDS) from alignment at ScGOVlb_3454:1..1218-

>Gvermi13692.t1 ID=Gvermi13692.t1|Name=Gvermi13692.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1218bp|location=Sequence derived from alignment at ScGOVlb_3454:1..1218- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCGGGCTGCTGCGCCTCTTCCGCTCCGAGTTCTTCGACACGCTGTT
CGGGAAGTACACCGACGCGACCGAAGCGATCGGAAATCAGTTTGACGCGA
TCCAGACGGCGTACCTCGGGAGTCTGGGGCTCGATCACATCGACCCTTGG
GCCGGGACTGATCAGGAAGGGCGGGACGATGCGCCGGGTTACACCCAGAT
CCATGGACGGAGCGGGCTCACTTCAACATTCTCGGCTCCGACCGTTCTTG
GGAGCGACATCTGGGATCTCTACCACTTCAACACCATCCCCGAACTCACG
GCGGCGCTCGAAAACTCCGAGAACGCCAGCGGCGGAATCCCAACAGTCGA
GCTCCGTGTTGGCTCCAATGGATTCTTTTACGAAAATGATGTCGAGATGT
CGTTCAGAATCATCATCGAGAATCCCGGAGGAACGGACTACACATTCAAC
CGCCGAGTGGTTTTCCGGATGACCAGCTTTGGTTCGCCGGTCTATGTGGG
CACCGACTCGAGTGCACATGACCTCTTTGATCAGACCCCGGTCTTCTGGT
TCAACATCGCCCTCCAGTTCTATACCGGAGAGAGTCTCGCGGGGACTTCG
TTTAACACATTCAACGGGCTCGGCGACCAGATCACGCTTGAGTTTGTATC
CGACGACATGCAGTTTGGTTCAGAAACTGCAGCGACACAGTACATCAACC
AGCGACTCGATGATCTCCAAGACGAAGTCTGGAATGAATCAATCGGAAAC
TCGGTGTACACAGCACTCGAGTCCGAGCGTGACAGCTGGGAAACGATCAT
CCAAGCATACATCGAGCTTGGGCTCCCCGATGTCTTTGAGCAGAGCACGG
CCGTCGCCAGCGCGTTCCGTGGGGCGACGATCGGCAACGAGATCGCCCTT
GCCCAGCCCCTCGATAATTGGTTTATGTCGATGCTCGGCGATGGGGACAA
TGGTCAGTTCGTCGATGTCCAGACCGACTTCGCGACTCGTGCTCAGATCG
TCCGAGACGAGATCAACGCGACCATCAGCCCCGATATGGTGTCAAATAGC
CCAGTTCAGGGTCACAGCATGATCGAGTGGACACTGTCCGAGCTCCGCAA
CCTGCGGGTCAATGCGTTCAAACTCGCGATCGATGACACCTACACCTCAA
GCAATGGCTCACTCAGTGTCGGAGCAAATGAGGGCTTGATCACCAATGAT
GTGGATCAGGAGTACCGC
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