Gvermi13686.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13686.t1
Unique NameGvermi13686.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length491
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_59contigScGOVlb_59:146111..147674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704991.1
Preferred namegroL
PFAMsCpn60_TCP1
Max annot lvl2759|Eukaryota
KEGG koko:K04077
KEGG Pathwayko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue1.73e-228
EggNOG OGsCOG0459@1|root,KOG0356@2759|Eukaryota
Descriptionprotein refolding
COG categoryO
BRITEko00000,ko00001,ko03019,ko03029,ko03110,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13686Gvermi13686Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_59 146111..147674 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13686.t1Gvermi13686.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_59 146111..147674 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13686.t1.start1Gvermi13686.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_59 146111..146113 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13686.t1.CDS1Gvermi13686.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_59 146111..146317 +
Gvermi13686.t1.CDS2Gvermi13686.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_59 146409..147674 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13686.t1.exon1Gvermi13686.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_59 146111..146317 +
Gvermi13686.t1.exon2Gvermi13686.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_59 146409..147674 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13686.t1.intron1Gvermi13686.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_59 146318..146408 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13686.t1.stop1Gvermi13686.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_59 147672..147674 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13686.t1 ID=Gvermi13686.t1|Name=Gvermi13686.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=491bp
MHKTILYHDDARKALEKGMDTLSEAVSVTLGPKGRNVVLEKKYGSPQIIN
DGVTIAKEIELSDSIENTGNVAAGSNPIVLKKGINKAVKFVTQKISQYSR
PIDSSRDIEQVASISAGNDRYIGQIISEAIQKVGKEGIISLEEGQSTDTF
LDIKEGMKFDKGFISPYFITDTSRMEVVQENSYILLTDKKITLIQEELLP
VLEQVAKTGMSLLIIAEDIEKEALATIVVNKLRGIINVAAVRAPGFGDRR
KALLEDIAVLTSGSLVSDDTGLNFNKISLADLGFAKKIQISKDNTTIIAD
SNQAAVGERCNEIRKQISMSSNAYEKEKLQERLAKLSSGVAVIKVGAATE
TEMKDKKLRLEDAINATKAAVEEGIVPGGGSTYVHLSKELLLWAEKNLAE
EELVGALIVQKALLLPLIRIATNAGLNGYVTVEKVNQSSFPFGYDINKSV
LVDMYNAGIIDPAKVTRSALQNAASIASMILTTECIIVDS*
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spliced messenger RNA

>Gvermi13686.t1 ID=Gvermi13686.t1|Name=Gvermi13686.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1473bp|location=Sequence derived from alignment at ScGOVlb_59:146111..147674+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATAAAACTATTTTATACCATGATGATGCACGTAAAGCTTTAGAGAA
AGGTATGGATACTTTATCTGAAGCCGTTTCAGTTACTTTAGGTCCTAAAG
GTAGAAATGTTGTATTGGAAAAAAAATATGGTTCGCCTCAGATTATTAAT
GATGGTGTAACTATTGCAAAAGAAATAGAGCTATCTGATTCTATTGAAAA
TACAGGTAATGTTGCTGCTGGTTCTAATCCCATAGTACTAAAAAAAGGTA
TAAATAAAGCAGTTAAGTTTGTAACGCAGAAAATTAGCCAGTATTCTCGT
CCTATAGATAGTTCCCGTGATATAGAACAAGTTGCTTCTATATCTGCTGG
TAATGATAGATATATAGGTCAAATTATTTCTGAGGCTATACAGAAAGTTG
GTAAAGAAGGGATTATTTCTCTAGAGGAGGGGCAATCAACTGATACTTTT
CTTGATATCAAAGAAGGTATGAAATTTGATAAAGGTTTTATTTCCCCATA
TTTTATTACAGATACATCTAGGATGGAGGTTGTACAGGAGAATAGCTATA
TACTATTAACTGATAAAAAAATAACTTTAATACAAGAAGAATTGTTACCA
GTTTTAGAGCAAGTTGCGAAAACTGGAATGTCATTATTAATTATTGCTGA
AGATATTGAAAAAGAAGCGTTAGCGACAATTGTTGTTAACAAATTAAGGG
GTATTATTAATGTTGCAGCAGTACGTGCTCCTGGTTTTGGAGATAGAAGA
AAAGCATTGTTAGAAGATATTGCGGTTCTAACTTCTGGTAGTCTTGTAAG
TGATGATACAGGCCTAAATTTTAATAAAATATCTCTTGCCGATTTAGGTT
TTGCAAAAAAAATACAGATTTCTAAAGATAATACTACTATAATCGCTGAT
AGTAACCAGGCAGCTGTGGGTGAAAGATGTAATGAAATCCGTAAGCAGAT
TAGCATGAGTTCTAATGCTTATGAAAAAGAAAAGTTGCAAGAAAGATTAG
CAAAATTGTCTAGCGGTGTTGCAGTAATTAAAGTTGGAGCTGCCACTGAA
ACTGAAATGAAGGATAAAAAGTTACGTTTGGAAGATGCTATTAATGCAAC
TAAAGCTGCTGTAGAAGAAGGTATAGTTCCTGGTGGTGGTTCTACTTATG
TACATTTATCTAAAGAACTTTTATTATGGGCTGAGAAAAATTTAGCTGAA
GAAGAGTTAGTAGGTGCTTTAATTGTTCAAAAAGCACTTCTTTTGCCTTT
AATTAGAATTGCTACAAATGCTGGTTTAAATGGATATGTAACAGTAGAAA
AGGTTAATCAATCTTCTTTTCCTTTTGGTTATGATATTAATAAAAGTGTT
TTAGTAGATATGTATAATGCTGGTATTATTGATCCTGCTAAAGTAACACG
CTCTGCTTTGCAGAATGCTGCCTCTATTGCTTCTATGATATTAACCACAG
AATGCATAATTGTTGATTCATAA
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protein sequence of Gvermi13686.t1

>Gvermi13686.t1 ID=Gvermi13686.t1|Name=Gvermi13686.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=491bp
MHKTILYHDDARKALEKGMDTLSEAVSVTLGPKGRNVVLEKKYGSPQIIN
DGVTIAKEIELSDSIENTGNVAAGSNPIVLKKGINKAVKFVTQKISQYSR
PIDSSRDIEQVASISAGNDRYIGQIISEAIQKVGKEGIISLEEGQSTDTF
LDIKEGMKFDKGFISPYFITDTSRMEVVQENSYILLTDKKITLIQEELLP
VLEQVAKTGMSLLIIAEDIEKEALATIVVNKLRGIINVAAVRAPGFGDRR
KALLEDIAVLTSGSLVSDDTGLNFNKISLADLGFAKKIQISKDNTTIIAD
SNQAAVGERCNEIRKQISMSSNAYEKEKLQERLAKLSSGVAVIKVGAATE
TEMKDKKLRLEDAINATKAAVEEGIVPGGGSTYVHLSKELLLWAEKNLAE
EELVGALIVQKALLLPLIRIATNAGLNGYVTVEKVNQSSFPFGYDINKSV
LVDMYNAGIIDPAKVTRSALQNAASIASMILTTECIIVDS*
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mRNA from alignment at ScGOVlb_59:146111..147674+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13686.t1 ID=Gvermi13686.t1|Name=Gvermi13686.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1564bp|location=Sequence derived from alignment at ScGOVlb_59:146111..147674+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATAAAACTATTTTATACCATGATGATGCACGTAAAGCTTTAGAGAA
AGGTATGGATACTTTATCTGAAGCCGTTTCAGTTACTTTAGGTCCTAAAG
GTAGAAATGTTGTATTGGAAAAAAAATATGGTTCGCCTCAGATTATTAAT
GATGGTGTAACTATTGCAAAAGAAATAGAGCTATCTGATTCTATTGAAAA
TACAGGTGTTGCACTTATTAGACAGGCTGCCTCGAAGACAAATGATGTTG
CTGGAGATGGGACTACAACAGCTACAGTATTAGCNNNNNNNNNNGAAGAA
TGTTGCTGCTGGTTCTAATCCCATAGTACTAAAAAAAGGTATAAATAAAG
CAGTTAAGTTTGTAACGCAGAAAATTAGCCAGTATTCTCGTCCTATAGAT
AGTTCCCGTGATATAGAACAAGTTGCTTCTATATCTGCTGGTAATGATAG
ATATATAGGTCAAATTATTTCTGAGGCTATACAGAAAGTTGGTAAAGAAG
GGATTATTTCTCTAGAGGAGGGGCAATCAACTGATACTTTTCTTGATATC
AAAGAAGGTATGAAATTTGATAAAGGTTTTATTTCCCCATATTTTATTAC
AGATACATCTAGGATGGAGGTTGTACAGGAGAATAGCTATATACTATTAA
CTGATAAAAAAATAACTTTAATACAAGAAGAATTGTTACCAGTTTTAGAG
CAAGTTGCGAAAACTGGAATGTCATTATTAATTATTGCTGAAGATATTGA
AAAAGAAGCGTTAGCGACAATTGTTGTTAACAAATTAAGGGGTATTATTA
ATGTTGCAGCAGTACGTGCTCCTGGTTTTGGAGATAGAAGAAAAGCATTG
TTAGAAGATATTGCGGTTCTAACTTCTGGTAGTCTTGTAAGTGATGATAC
AGGCCTAAATTTTAATAAAATATCTCTTGCCGATTTAGGTTTTGCAAAAA
AAATACAGATTTCTAAAGATAATACTACTATAATCGCTGATAGTAACCAG
GCAGCTGTGGGTGAAAGATGTAATGAAATCCGTAAGCAGATTAGCATGAG
TTCTAATGCTTATGAAAAAGAAAAGTTGCAAGAAAGATTAGCAAAATTGT
CTAGCGGTGTTGCAGTAATTAAAGTTGGAGCTGCCACTGAAACTGAAATG
AAGGATAAAAAGTTACGTTTGGAAGATGCTATTAATGCAACTAAAGCTGC
TGTAGAAGAAGGTATAGTTCCTGGTGGTGGTTCTACTTATGTACATTTAT
CTAAAGAACTTTTATTATGGGCTGAGAAAAATTTAGCTGAAGAAGAGTTA
GTAGGTGCTTTAATTGTTCAAAAAGCACTTCTTTTGCCTTTAATTAGAAT
TGCTACAAATGCTGGTTTAAATGGATATGTAACAGTAGAAAAGGTTAATC
AATCTTCTTTTCCTTTTGGTTATGATATTAATAAAAGTGTTTTAGTAGAT
ATGTATAATGCTGGTATTATTGATCCTGCTAAAGTAACACGCTCTGCTTT
GCAGAATGCTGCCTCTATTGCTTCTATGATATTAACCACAGAATGCATAA
TTGTTGATTCATAA
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Coding sequence (CDS) from alignment at ScGOVlb_59:146111..147674+

>Gvermi13686.t1 ID=Gvermi13686.t1|Name=Gvermi13686.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1473bp|location=Sequence derived from alignment at ScGOVlb_59:146111..147674+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATAAAACTATTTTATACCATGATGATGCACGTAAAGCTTTAGAGAA
AGGTATGGATACTTTATCTGAAGCCGTTTCAGTTACTTTAGGTCCTAAAG
GTAGAAATGTTGTATTGGAAAAAAAATATGGTTCGCCTCAGATTATTAAT
GATGGTGTAACTATTGCAAAAGAAATAGAGCTATCTGATTCTATTGAAAA
TACAGGTAATGTTGCTGCTGGTTCTAATCCCATAGTACTAAAAAAAGGTA
TAAATAAAGCAGTTAAGTTTGTAACGCAGAAAATTAGCCAGTATTCTCGT
CCTATAGATAGTTCCCGTGATATAGAACAAGTTGCTTCTATATCTGCTGG
TAATGATAGATATATAGGTCAAATTATTTCTGAGGCTATACAGAAAGTTG
GTAAAGAAGGGATTATTTCTCTAGAGGAGGGGCAATCAACTGATACTTTT
CTTGATATCAAAGAAGGTATGAAATTTGATAAAGGTTTTATTTCCCCATA
TTTTATTACAGATACATCTAGGATGGAGGTTGTACAGGAGAATAGCTATA
TACTATTAACTGATAAAAAAATAACTTTAATACAAGAAGAATTGTTACCA
GTTTTAGAGCAAGTTGCGAAAACTGGAATGTCATTATTAATTATTGCTGA
AGATATTGAAAAAGAAGCGTTAGCGACAATTGTTGTTAACAAATTAAGGG
GTATTATTAATGTTGCAGCAGTACGTGCTCCTGGTTTTGGAGATAGAAGA
AAAGCATTGTTAGAAGATATTGCGGTTCTAACTTCTGGTAGTCTTGTAAG
TGATGATACAGGCCTAAATTTTAATAAAATATCTCTTGCCGATTTAGGTT
TTGCAAAAAAAATACAGATTTCTAAAGATAATACTACTATAATCGCTGAT
AGTAACCAGGCAGCTGTGGGTGAAAGATGTAATGAAATCCGTAAGCAGAT
TAGCATGAGTTCTAATGCTTATGAAAAAGAAAAGTTGCAAGAAAGATTAG
CAAAATTGTCTAGCGGTGTTGCAGTAATTAAAGTTGGAGCTGCCACTGAA
ACTGAAATGAAGGATAAAAAGTTACGTTTGGAAGATGCTATTAATGCAAC
TAAAGCTGCTGTAGAAGAAGGTATAGTTCCTGGTGGTGGTTCTACTTATG
TACATTTATCTAAAGAACTTTTATTATGGGCTGAGAAAAATTTAGCTGAA
GAAGAGTTAGTAGGTGCTTTAATTGTTCAAAAAGCACTTCTTTTGCCTTT
AATTAGAATTGCTACAAATGCTGGTTTAAATGGATATGTAACAGTAGAAA
AGGTTAATCAATCTTCTTTTCCTTTTGGTTATGATATTAATAAAAGTGTT
TTAGTAGATATGTATAATGCTGGTATTATTGATCCTGCTAAAGTAACACG
CTCTGCTTTGCAGAATGCTGCCTCTATTGCTTCTATGATATTAACCACAG
AATGCATAATTGTTGATTCATAA
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