Gvermi13682.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi13682.t1
Unique Name	Gvermi13682.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	711

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_59	contig	ScGOVlb_59:134846..136978 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	43989.cce_4353
Preferred name	glsF
PFAMs	GATase_2,GXGXG,Glu_syn_central,Glu_synthase
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC00006,RC00010
KEGG ko	ko:K00284
KEGG Reaction	R00021,R10086
KEGG Pathway	ko00630,ko00910,ko01120,map00630,map00910,map01120
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0015930,GO:0016053,GO:0016491,GO:0016638,GO:0019676,GO:0019740,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue	4.78e-295
EggNOG OGs	COG0067@1\|root,COG0069@1\|root,COG0070@1\|root,COG0067@2\|Bacteria,COG0069@2\|Bacteria,COG0070@2\|Bacteria,1G0XM@1117\|Cyanobacteria,3KFR5@43988\|Cyanothece
EC	1.4.7.1
Description	glutamate synthase alpha subunit domain protein
COG category	C
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi13682	Gvermi13682	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_59 134846..136978 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13682.t1.stop1	Gvermi13682.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_59 134846..134848 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13682.t1.CDS1	Gvermi13682.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_59 134846..136978 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13682.t1.exon1	Gvermi13682.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_59 134846..136978 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13682.t1.start1	Gvermi13682.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_59 136976..136978 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13682.t1	Gvermi13682.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_59 134846..136978 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_59:134846..136978-
coding sequence from alignment at ScGOVlb_59:134846..136978-

mRNA sequence

>Gvermi13682.t1 ID=Gvermi13682.t1|Name=Gvermi13682.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=711bp
MRDLLSISSNRKSIDISEVQSIDQILATFCTGGMSLGALSRETHETLAIA
MNRIGGKSNSGEGGEDPIRFKTINDVNDSGISKSFSHLKGLQNNDIASSA
IKQIASGRFGVTPEYLVNAKQLEIKIAQGAKPGEGGQLPGKKVSPYIATL
RNCKPGVTLISPPPHHDIYSIEDLAQLIFDLHQINPNAQISVKLVASVGI
GTIAAGVAKGNADIIQISGHDGGTGASPLSSIKHAGIPWELGLTEVHQTL
VENELRNKVILRVDGGLRTGKDVLIAAIMGAEEFGFGTIAMIATGCVMAR
ICHTNNCPVGVATQRQDLRNRYPGIPADLVNFFIYMAEEIRSILADLGYH
SLKDIIGMTSLLSFNSADLVKTKNLDLGILVNYKDSNNLLKFHETIHNNG
LVLDDILLDDQGFLHAINTELTFSKNVKISNTDRSVGGRIAGVIAKKYGE
QSFKGNLQINFHGAAGQSFGSFICNGMYLSLIGEANDYVGKGMNGGEIII
SPYPEYKNKSSNFAIIGNTCLYGATGGYLFVNGQAGERFAVRNSAAEAVI
EGVGDHACEYMTGGLIVVLGSAGRNIAAGMTGGLAYFLDENDDFITKVNS
EIVEVKRIVTKEAEDQLLHLIELYXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXELYEIKTKSLKARKILDEWENYVDRFWQIVPPSEQNTVYTDL
QVSAYASIKS*

spliced messenger RNA

>Gvermi13682.t1 ID=Gvermi13682.t1|Name=Gvermi13682.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2133bp|location=Sequence derived from alignment at ScGOVlb_59:134846..136978- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAGATCTATTATCTATCTCCAGTAACAGAAAATCTATAGATATTAG
TGAAGTTCAGTCTATTGATCAAATATTAGCTACTTTTTGTACAGGTGGTA
TGTCTTTGGGTGCACTATCAAGAGAAACACATGAAACTTTAGCTATAGCA
ATGAATAGGATCGGTGGTAAATCAAATTCTGGTGAAGGTGGTGAAGATCC
TATTCGATTTAAGACAATCAATGATGTTAATGATTCTGGTATATCAAAGA
GTTTTTCTCATCTAAAAGGTTTACAAAATAATGATATAGCAAGTTCAGCT
ATAAAACAGATAGCTTCTGGTCGTTTTGGGGTAACTCCTGAGTATTTAGT
AAATGCGAAACAATTAGAGATAAAAATAGCTCAAGGTGCTAAACCTGGTG
AAGGAGGCCAGTTACCTGGTAAAAAAGTTAGTCCTTATATTGCTACTTTA
AGAAACTGTAAACCAGGTGTAACTTTAATTTCACCTCCACCACATCATGA
TATATATTCCATAGAAGATCTTGCTCAGTTGATTTTTGATTTACATCAAA
TTAATCCTAACGCACAAATTTCTGTCAAATTAGTAGCTTCGGTAGGTATA
GGAACTATTGCTGCAGGTGTTGCGAAAGGTAATGCTGATATTATACAAAT
TTCTGGTCATGATGGTGGAACCGGTGCATCACCACTTAGTTCTATTAAGC
ATGCAGGTATACCATGGGAATTGGGTTTAACAGAAGTTCATCAAACATTA
GTTGAAAATGAATTAAGAAATAAAGTTATTTTGAGAGTTGATGGTGGTCT
AAGAACTGGTAAAGATGTATTAATTGCAGCTATTATGGGTGCTGAAGAAT
TTGGCTTTGGAACAATTGCAATGATTGCTACTGGGTGTGTAATGGCTAGA
ATATGTCATACCAATAATTGTCCTGTAGGTGTTGCAACACAAAGACAAGA
TCTAAGAAATAGATATCCTGGTATACCTGCTGATTTAGTTAATTTTTTCA
TTTATATGGCAGAAGAAATTAGAAGTATCTTAGCTGATTTAGGTTACCAT
AGTTTAAAAGATATAATTGGAATGACTAGTTTATTGAGTTTTAATTCTGC
AGATTTAGTTAAAACTAAAAATTTAGATCTGGGCATTCTTGTAAATTATA
AAGACTCTAATAATCTACTAAAATTTCATGAAACTATACACAATAATGGT
CTTGTTTTAGATGATATTTTATTAGATGACCAAGGTTTTTTACATGCTAT
TAATACTGAGTTGACTTTTAGCAAGAATGTTAAAATCAGTAATACAGATA
GATCAGTAGGAGGAAGAATTGCTGGTGTAATAGCTAAAAAATACGGAGAA
CAAAGCTTTAAAGGTAACTTGCAGATTAATTTTCATGGTGCAGCAGGTCA
AAGTTTTGGTTCTTTTATTTGTAATGGTATGTACTTAAGTTTAATTGGAG
AGGCTAATGATTATGTTGGTAAAGGTATGAATGGAGGAGAAATTATTATT
TCTCCTTATCCTGAATATAAAAATAAATCTTCTAATTTTGCAATCATTGG
TAATACATGTCTTTATGGTGCAACTGGTGGTTATTTATTTGTTAATGGTC
AAGCTGGAGAAAGATTTGCAGTACGTAATTCAGCAGCTGAAGCAGTTATT
GAGGGGGTTGGAGATCACGCTTGTGAGTATATGACAGGAGGTTTAATTGT
TGTATTAGGATCTGCTGGACGTAATATTGCTGCCGGTATGACCGGAGGTT
TAGCTTATTTCTTAGATGAAAATGATGATTTTATTACTAAAGTTAACTCA
GAGATAGTAGAGGTTAAAAGAATAGTTACTAAGGAAGCTGAAGATCAACT
ATTACATTTAATTGAGCTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTGAGCTGTATGAAATTAAAACTAAAAG
TTTGAAAGCACGTAAAATTTTAGATGAGTGGGAGAACTATGTAGATCGTT
TTTGGCAAATAGTTCCTCCTTCTGAGCAAAATACGGTTTATACTGACCTA
CAAGTTTCGGCTTATGCTAGTATTAAGTCTTAG

protein sequence of Gvermi13682.t1

>Gvermi13682.t1 ID=Gvermi13682.t1|Name=Gvermi13682.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=711bp
MRDLLSISSNRKSIDISEVQSIDQILATFCTGGMSLGALSRETHETLAIA
MNRIGGKSNSGEGGEDPIRFKTINDVNDSGISKSFSHLKGLQNNDIASSA
IKQIASGRFGVTPEYLVNAKQLEIKIAQGAKPGEGGQLPGKKVSPYIATL
RNCKPGVTLISPPPHHDIYSIEDLAQLIFDLHQINPNAQISVKLVASVGI
GTIAAGVAKGNADIIQISGHDGGTGASPLSSIKHAGIPWELGLTEVHQTL
VENELRNKVILRVDGGLRTGKDVLIAAIMGAEEFGFGTIAMIATGCVMAR
ICHTNNCPVGVATQRQDLRNRYPGIPADLVNFFIYMAEEIRSILADLGYH
SLKDIIGMTSLLSFNSADLVKTKNLDLGILVNYKDSNNLLKFHETIHNNG
LVLDDILLDDQGFLHAINTELTFSKNVKISNTDRSVGGRIAGVIAKKYGE
QSFKGNLQINFHGAAGQSFGSFICNGMYLSLIGEANDYVGKGMNGGEIII
SPYPEYKNKSSNFAIIGNTCLYGATGGYLFVNGQAGERFAVRNSAAEAVI
EGVGDHACEYMTGGLIVVLGSAGRNIAAGMTGGLAYFLDENDDFITKVNS
EIVEVKRIVTKEAEDQLLHLIELYXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXELYEIKTKSLKARKILDEWENYVDRFWQIVPPSEQNTVYTDL
QVSAYASIKS*

mRNA from alignment at ScGOVlb_59:134846..136978-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi13682.t1 ID=Gvermi13682.t1|Name=Gvermi13682.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2133bp|location=Sequence derived from alignment at ScGOVlb_59:134846..136978- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGAGATCTATTATCTATCTCCAGTAACAGAAAATCTATAGATATTAG
TGAAGTTCAGTCTATTGATCAAATATTAGCTACTTTTTGTACAGGTGGTA
TGTCTTTGGGTGCACTATCAAGAGAAACACATGAAACTTTAGCTATAGCA
ATGAATAGGATCGGTGGTAAATCAAATTCTGGTGAAGGTGGTGAAGATCC
TATTCGATTTAAGACAATCAATGATGTTAATGATTCTGGTATATCAAAGA
GTTTTTCTCATCTAAAAGGTTTACAAAATAATGATATAGCAAGTTCAGCT
ATAAAACAGATAGCTTCTGGTCGTTTTGGGGTAACTCCTGAGTATTTAGT
AAATGCGAAACAATTAGAGATAAAAATAGCTCAAGGTGCTAAACCTGGTG
AAGGAGGCCAGTTACCTGGTAAAAAAGTTAGTCCTTATATTGCTACTTTA
AGAAACTGTAAACCAGGTGTAACTTTAATTTCACCTCCACCACATCATGA
TATATATTCCATAGAAGATCTTGCTCAGTTGATTTTTGATTTACATCAAA
TTAATCCTAACGCACAAATTTCTGTCAAATTAGTAGCTTCGGTAGGTATA
GGAACTATTGCTGCAGGTGTTGCGAAAGGTAATGCTGATATTATACAAAT
TTCTGGTCATGATGGTGGAACCGGTGCATCACCACTTAGTTCTATTAAGC
ATGCAGGTATACCATGGGAATTGGGTTTAACAGAAGTTCATCAAACATTA
GTTGAAAATGAATTAAGAAATAAAGTTATTTTGAGAGTTGATGGTGGTCT
AAGAACTGGTAAAGATGTATTAATTGCAGCTATTATGGGTGCTGAAGAAT
TTGGCTTTGGAACAATTGCAATGATTGCTACTGGGTGTGTAATGGCTAGA
ATATGTCATACCAATAATTGTCCTGTAGGTGTTGCAACACAAAGACAAGA
TCTAAGAAATAGATATCCTGGTATACCTGCTGATTTAGTTAATTTTTTCA
TTTATATGGCAGAAGAAATTAGAAGTATCTTAGCTGATTTAGGTTACCAT
AGTTTAAAAGATATAATTGGAATGACTAGTTTATTGAGTTTTAATTCTGC
AGATTTAGTTAAAACTAAAAATTTAGATCTGGGCATTCTTGTAAATTATA
AAGACTCTAATAATCTACTAAAATTTCATGAAACTATACACAATAATGGT
CTTGTTTTAGATGATATTTTATTAGATGACCAAGGTTTTTTACATGCTAT
TAATACTGAGTTGACTTTTAGCAAGAATGTTAAAATCAGTAATACAGATA
GATCAGTAGGAGGAAGAATTGCTGGTGTAATAGCTAAAAAATACGGAGAA
CAAAGCTTTAAAGGTAACTTGCAGATTAATTTTCATGGTGCAGCAGGTCA
AAGTTTTGGTTCTTTTATTTGTAATGGTATGTACTTAAGTTTAATTGGAG
AGGCTAATGATTATGTTGGTAAAGGTATGAATGGAGGAGAAATTATTATT
TCTCCTTATCCTGAATATAAAAATAAATCTTCTAATTTTGCAATCATTGG
TAATACATGTCTTTATGGTGCAACTGGTGGTTATTTATTTGTTAATGGTC
AAGCTGGAGAAAGATTTGCAGTACGTAATTCAGCAGCTGAAGCAGTTATT
GAGGGGGTTGGAGATCACGCTTGTGAGTATATGACAGGAGGTTTAATTGT
TGTATTAGGATCTGCTGGACGTAATATTGCTGCCGGTATGACCGGAGGTT
TAGCTTATTTCTTAGATGAAAATGATGATTTTATTACTAAAGTTAACTCA
GAGATAGTAGAGGTTAAAAGAATAGTTACTAAGGAAGCTGAAGATCAACT
ATTACATTTAATTGAGCTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTGAGCTGTATGAAATTAAAACTAAAAG
TTTGAAAGCACGTAAAATTTTAGATGAGTGGGAGAACTATGTAGATCGTT
TTTGGCAAATAGTTCCTCCTTCTGAGCAAAATACGGTTTATACTGACCTA
CAAGTTTCGGCTTATGCTAGTATTAAGTCTTAG

Coding sequence (CDS) from alignment at ScGOVlb_59:134846..136978-

>Gvermi13682.t1 ID=Gvermi13682.t1|Name=Gvermi13682.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2133bp|location=Sequence derived from alignment at ScGOVlb_59:134846..136978- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGAGATCTATTATCTATCTCCAGTAACAGAAAATCTATAGATATTAG
TGAAGTTCAGTCTATTGATCAAATATTAGCTACTTTTTGTACAGGTGGTA
TGTCTTTGGGTGCACTATCAAGAGAAACACATGAAACTTTAGCTATAGCA
ATGAATAGGATCGGTGGTAAATCAAATTCTGGTGAAGGTGGTGAAGATCC
TATTCGATTTAAGACAATCAATGATGTTAATGATTCTGGTATATCAAAGA
GTTTTTCTCATCTAAAAGGTTTACAAAATAATGATATAGCAAGTTCAGCT
ATAAAACAGATAGCTTCTGGTCGTTTTGGGGTAACTCCTGAGTATTTAGT
AAATGCGAAACAATTAGAGATAAAAATAGCTCAAGGTGCTAAACCTGGTG
AAGGAGGCCAGTTACCTGGTAAAAAAGTTAGTCCTTATATTGCTACTTTA
AGAAACTGTAAACCAGGTGTAACTTTAATTTCACCTCCACCACATCATGA
TATATATTCCATAGAAGATCTTGCTCAGTTGATTTTTGATTTACATCAAA
TTAATCCTAACGCACAAATTTCTGTCAAATTAGTAGCTTCGGTAGGTATA
GGAACTATTGCTGCAGGTGTTGCGAAAGGTAATGCTGATATTATACAAAT
TTCTGGTCATGATGGTGGAACCGGTGCATCACCACTTAGTTCTATTAAGC
ATGCAGGTATACCATGGGAATTGGGTTTAACAGAAGTTCATCAAACATTA
GTTGAAAATGAATTAAGAAATAAAGTTATTTTGAGAGTTGATGGTGGTCT
AAGAACTGGTAAAGATGTATTAATTGCAGCTATTATGGGTGCTGAAGAAT
TTGGCTTTGGAACAATTGCAATGATTGCTACTGGGTGTGTAATGGCTAGA
ATATGTCATACCAATAATTGTCCTGTAGGTGTTGCAACACAAAGACAAGA
TCTAAGAAATAGATATCCTGGTATACCTGCTGATTTAGTTAATTTTTTCA
TTTATATGGCAGAAGAAATTAGAAGTATCTTAGCTGATTTAGGTTACCAT
AGTTTAAAAGATATAATTGGAATGACTAGTTTATTGAGTTTTAATTCTGC
AGATTTAGTTAAAACTAAAAATTTAGATCTGGGCATTCTTGTAAATTATA
AAGACTCTAATAATCTACTAAAATTTCATGAAACTATACACAATAATGGT
CTTGTTTTAGATGATATTTTATTAGATGACCAAGGTTTTTTACATGCTAT
TAATACTGAGTTGACTTTTAGCAAGAATGTTAAAATCAGTAATACAGATA
GATCAGTAGGAGGAAGAATTGCTGGTGTAATAGCTAAAAAATACGGAGAA
CAAAGCTTTAAAGGTAACTTGCAGATTAATTTTCATGGTGCAGCAGGTCA
AAGTTTTGGTTCTTTTATTTGTAATGGTATGTACTTAAGTTTAATTGGAG
AGGCTAATGATTATGTTGGTAAAGGTATGAATGGAGGAGAAATTATTATT
TCTCCTTATCCTGAATATAAAAATAAATCTTCTAATTTTGCAATCATTGG
TAATACATGTCTTTATGGTGCAACTGGTGGTTATTTATTTGTTAATGGTC
AAGCTGGAGAAAGATTTGCAGTACGTAATTCAGCAGCTGAAGCAGTTATT
GAGGGGGTTGGAGATCACGCTTGTGAGTATATGACAGGAGGTTTAATTGT
TGTATTAGGATCTGCTGGACGTAATATTGCTGCCGGTATGACCGGAGGTT
TAGCTTATTTCTTAGATGAAAATGATGATTTTATTACTAAAGTTAACTCA
GAGATAGTAGAGGTTAAAAGAATAGTTACTAAGGAAGCTGAAGATCAACT
ATTACATTTAATTGAGCTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTGAGCTGTATGAAATTAAAACTAAAAG
TTTGAAAGCACGTAAAATTTTAGATGAGTGGGAGAACTATGTAGATCGTT
TTTGGCAAATAGTTCCTCCTTCTGAGCAAAATACGGTTTATACTGACCTA
CAAGTTTCGGCTTATGCTAGTATTAAGTCTTAG