Gvermi13681.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13681.t1
Unique NameGvermi13681.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length333
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_59contigScGOVlb_59:131769..132767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog388467.A19Y_0113
Preferred nameaccA
PFAMsACCA
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00040,RC00253,RC00367
KEGG koko:K01962
KEGG ReactionR00742,R04386
KEGG Pathwayko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212
KEGG ModuleM00082,M00376
Evalue1.77e-134
EggNOG OGsCOG0825@1|root,COG0825@2|Bacteria,1G0PY@1117|Cyanobacteria,1H7QJ@1150|Oscillatoriales
EC2.1.3.15,6.4.1.2
DescriptionComponent of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13681Gvermi13681Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_59 131769..132767 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13681.t1.stop1Gvermi13681.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_59 131769..131771 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13681.t1.CDS1Gvermi13681.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_59 131769..132767 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13681.t1.exon1Gvermi13681.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_59 131769..132767 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13681.t1.start1Gvermi13681.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_59 132765..132767 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13681.t1Gvermi13681.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_59 131769..132767 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13681.t1 ID=Gvermi13681.t1|Name=Gvermi13681.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=333bp
MISRKVLTLDFLKPVLEFEFQLDQLKKILVSNQHSIDMKFLNREVNKLYM
ELDLIKKYLFNSLSPLQRLHLVRQSDRPTTLDYINNIMDHWIELHGDRGG
TDDSAIVSGIASLGSQSIAFIGHQRGRDTKENVLRNFGMASPGGYRKALR
IMKHANKFNFPILTFIDTPGAWAGIKAEELGQGEAIAINLREMFSFDVPI
ICTIIGEGGSGGALGVGIGDSIMMLEYAVYTVATPEACAAILWKDSTKSP
IAAESLKITSSDLKVLGIIDHIVQEPIGGAQAYPFKAFLYLKTKLISELS
YLLSLSSDERKKRRYNKFRQIGKFYEDALPIS*
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spliced messenger RNA

>Gvermi13681.t1 ID=Gvermi13681.t1|Name=Gvermi13681.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=999bp|location=Sequence derived from alignment at ScGOVlb_59:131769..132767- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTTCTAGAAAAGTATTAACTCTTGATTTTTTAAAGCCTGTTTTAGA
ATTTGAATTCCAATTAGATCAACTAAAAAAAATTCTTGTGTCAAATCAGC
ATTCTATCGATATGAAGTTTCTTAATAGAGAAGTTAATAAGCTCTATATG
GAACTAGATCTTATTAAAAAATATTTGTTTAATTCTTTAAGTCCATTACA
AAGGCTACATCTTGTAAGACAGTCTGATAGGCCAACTACGCTTGATTATA
TCAATAATATCATGGATCATTGGATTGAGCTCCATGGTGATAGAGGCGGT
ACAGACGACTCAGCTATAGTTAGTGGTATTGCTTCTTTAGGTTCACAATC
TATTGCTTTTATTGGTCATCAAAGGGGACGAGATACTAAAGAGAATGTCC
TAAGAAATTTTGGTATGGCATCACCAGGTGGTTATCGTAAAGCTTTAAGA
ATCATGAAGCATGCAAATAAATTTAATTTTCCAATATTAACATTCATTGA
TACTCCTGGTGCTTGGGCAGGTATTAAGGCTGAGGAGTTAGGTCAAGGTG
AGGCTATTGCTATAAATTTAAGAGAAATGTTTTCTTTTGATGTACCTATA
ATATGTACTATTATTGGAGAAGGAGGGTCTGGAGGAGCTTTAGGTGTTGG
TATTGGAGATTCTATTATGATGCTTGAATATGCAGTTTATACTGTAGCTA
CTCCAGAGGCTTGTGCGGCTATTTTATGGAAAGATAGTACAAAGTCCCCA
ATAGCAGCTGAGTCTTTAAAAATCACTTCTTCAGATTTAAAAGTTTTAGG
TATTATTGATCATATTGTACAAGAACCTATTGGTGGTGCTCAAGCTTACC
CTTTTAAAGCGTTCCTTTATCTTAAAACTAAGTTAATCTCGGAATTAAGT
TATTTACTAAGTTTATCTAGTGATGAAAGGAAGAAAAGAAGGTACAATAA
GTTCCGCCAAATAGGTAAGTTCTATGAAGATGCCTTACCTATTTCCTAG
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protein sequence of Gvermi13681.t1

>Gvermi13681.t1 ID=Gvermi13681.t1|Name=Gvermi13681.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=333bp
MISRKVLTLDFLKPVLEFEFQLDQLKKILVSNQHSIDMKFLNREVNKLYM
ELDLIKKYLFNSLSPLQRLHLVRQSDRPTTLDYINNIMDHWIELHGDRGG
TDDSAIVSGIASLGSQSIAFIGHQRGRDTKENVLRNFGMASPGGYRKALR
IMKHANKFNFPILTFIDTPGAWAGIKAEELGQGEAIAINLREMFSFDVPI
ICTIIGEGGSGGALGVGIGDSIMMLEYAVYTVATPEACAAILWKDSTKSP
IAAESLKITSSDLKVLGIIDHIVQEPIGGAQAYPFKAFLYLKTKLISELS
YLLSLSSDERKKRRYNKFRQIGKFYEDALPIS*
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mRNA from alignment at ScGOVlb_59:131769..132767-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13681.t1 ID=Gvermi13681.t1|Name=Gvermi13681.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=999bp|location=Sequence derived from alignment at ScGOVlb_59:131769..132767- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATTTCTAGAAAAGTATTAACTCTTGATTTTTTAAAGCCTGTTTTAGA
ATTTGAATTCCAATTAGATCAACTAAAAAAAATTCTTGTGTCAAATCAGC
ATTCTATCGATATGAAGTTTCTTAATAGAGAAGTTAATAAGCTCTATATG
GAACTAGATCTTATTAAAAAATATTTGTTTAATTCTTTAAGTCCATTACA
AAGGCTACATCTTGTAAGACAGTCTGATAGGCCAACTACGCTTGATTATA
TCAATAATATCATGGATCATTGGATTGAGCTCCATGGTGATAGAGGCGGT
ACAGACGACTCAGCTATAGTTAGTGGTATTGCTTCTTTAGGTTCACAATC
TATTGCTTTTATTGGTCATCAAAGGGGACGAGATACTAAAGAGAATGTCC
TAAGAAATTTTGGTATGGCATCACCAGGTGGTTATCGTAAAGCTTTAAGA
ATCATGAAGCATGCAAATAAATTTAATTTTCCAATATTAACATTCATTGA
TACTCCTGGTGCTTGGGCAGGTATTAAGGCTGAGGAGTTAGGTCAAGGTG
AGGCTATTGCTATAAATTTAAGAGAAATGTTTTCTTTTGATGTACCTATA
ATATGTACTATTATTGGAGAAGGAGGGTCTGGAGGAGCTTTAGGTGTTGG
TATTGGAGATTCTATTATGATGCTTGAATATGCAGTTTATACTGTAGCTA
CTCCAGAGGCTTGTGCGGCTATTTTATGGAAAGATAGTACAAAGTCCCCA
ATAGCAGCTGAGTCTTTAAAAATCACTTCTTCAGATTTAAAAGTTTTAGG
TATTATTGATCATATTGTACAAGAACCTATTGGTGGTGCTCAAGCTTACC
CTTTTAAAGCGTTCCTTTATCTTAAAACTAAGTTAATCTCGGAATTAAGT
TATTTACTAAGTTTATCTAGTGATGAAAGGAAGAAAAGAAGGTACAATAA
GTTCCGCCAAATAGGTAAGTTCTATGAAGATGCCTTACCTATTTCCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_59:131769..132767-

>Gvermi13681.t1 ID=Gvermi13681.t1|Name=Gvermi13681.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=999bp|location=Sequence derived from alignment at ScGOVlb_59:131769..132767- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATTTCTAGAAAAGTATTAACTCTTGATTTTTTAAAGCCTGTTTTAGA
ATTTGAATTCCAATTAGATCAACTAAAAAAAATTCTTGTGTCAAATCAGC
ATTCTATCGATATGAAGTTTCTTAATAGAGAAGTTAATAAGCTCTATATG
GAACTAGATCTTATTAAAAAATATTTGTTTAATTCTTTAAGTCCATTACA
AAGGCTACATCTTGTAAGACAGTCTGATAGGCCAACTACGCTTGATTATA
TCAATAATATCATGGATCATTGGATTGAGCTCCATGGTGATAGAGGCGGT
ACAGACGACTCAGCTATAGTTAGTGGTATTGCTTCTTTAGGTTCACAATC
TATTGCTTTTATTGGTCATCAAAGGGGACGAGATACTAAAGAGAATGTCC
TAAGAAATTTTGGTATGGCATCACCAGGTGGTTATCGTAAAGCTTTAAGA
ATCATGAAGCATGCAAATAAATTTAATTTTCCAATATTAACATTCATTGA
TACTCCTGGTGCTTGGGCAGGTATTAAGGCTGAGGAGTTAGGTCAAGGTG
AGGCTATTGCTATAAATTTAAGAGAAATGTTTTCTTTTGATGTACCTATA
ATATGTACTATTATTGGAGAAGGAGGGTCTGGAGGAGCTTTAGGTGTTGG
TATTGGAGATTCTATTATGATGCTTGAATATGCAGTTTATACTGTAGCTA
CTCCAGAGGCTTGTGCGGCTATTTTATGGAAAGATAGTACAAAGTCCCCA
ATAGCAGCTGAGTCTTTAAAAATCACTTCTTCAGATTTAAAAGTTTTAGG
TATTATTGATCATATTGTACAAGAACCTATTGGTGGTGCTCAAGCTTACC
CTTTTAAAGCGTTCCTTTATCTTAAAACTAAGTTAATCTCGGAATTAAGT
TATTTACTAAGTTTATCTAGTGATGAAAGGAAGAAAAGAAGGTACAATAA
GTTCCGCCAAATAGGTAAGTTCTATGAAGATGCCTTACCTATTTCCTAG
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